New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 696741	18 (0.510)	3 (0.130)	3/332	2.0	17.5%	intergenic (‑1/+15)	metU/glnW	tRNA‑Met/tRNA‑Gln
	?	NC_000913	697135 =	16 (0.670)					intergenic (‑2/+378)	metT/asnB	tRNA‑Met/asparagine synthetase B
Rejected: Frequency below/above cutoff threshold.

CCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCATTCTTTTGTCATACAGGATGAAATTCGGAATTTAACAATAGTGGTGGGAAATTAATC  >  NC_000913/696888‑697372                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                              ccAGGGAATGCCGGTATCAAAAACCGTTGCCGTACCGCTTTGCGATGCCCCATCCGTACAACGCGTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCTCTCCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCtt                                                                                                                                                                                                                                            <  1:29957/251‑1 (MQ=38)                                  aCCGCTTGGCGATACCCCATCCGTACAACGCTTGCTGGTGAATGGTGCGGGATGTGAGAATGAAACGCCCACCCCCGACAGCGCCAGACCTTAACTCCGCGGCGTCTTCCAATTCCTCCTCGCTAGAAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGgc                                                                                                                                                                                                           <  2:146092/251‑1 (MQ=16)                                   ccGCTTGGCGATACCCCATCCGTACAACGCTTCTTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCCCCCCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGgcg                                                                                                                                                                                                          <  2:17460/251‑1 (MQ=255)                                         aataaattggctggggtacgaggattcgaacctcggactgccggaatcagaatccggtgccttaccgcttggcgataccccaacaaattggttttgaatttgccgaacatattcgatacattcagaatttggtggctacgacgggattcgaacctgtgcccccatcattatgagtgatgtgctctaaccaactgagctacgtagcccTATTTTTTTTCGCGCTACCTTATCCGCGTTGTGGGACGCAtt                                                                                                                                                                                                      >  2:155500‑M2/208‑249 (MQ=255)                                                       cGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGAGTCGAACTCGCACCCCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTGCCAATTTCGCCACGCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGGGATGTGCTCTAACCAACGGAGGTACGTAGCCATCTTTTTTTGCGCGATACCTTATCGGCGTTTCGGGGCGCATTATGCGTATAGAGCCtt                                                                                                                                                                                      <  2:307956/251‑1 (MQ=38)                                                       cGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCtt                                                                                                                                                                                      <  1:56226/251‑1 (MQ=255)                                                              cGCTTTCTGGTGAATGGTGCGGGAGTCGAGACTCGAACGCGCACCCCTTGCGGAGCCAGAACCTAAATCTGGTTGATCTAGCAATTTCGCCACTCCCGCTAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTACCGGCGTTGCGTGGCGCATTATGCGTACAGAGCCTTGCAGCGt                                                                                                                                                                               <  1:90168/251‑1 (MQ=37)                                                                          gtgaatgccggaagcaggattcggacccttaccgcttggcgataccccatcaaattggttttgattttcccgatcatcttcgctacaaacagaatttggtggctacgacgggattcgaacctgtgaccccatcattatgagtgatgtgctctaaccaactgagctacgtagccaTCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCttttt                                                                                                                                                                   <  2:165262‑M2/77‑1 (MQ=255)                                                                                gccggaatcagaatccggtgccttaccgcttggcgataccccaccaaattggttttgaatttgccgaacatattcgatacattcagaatttggtggctacgacgggattcgaacctgtgaccccatcattatgagtgatgtgctctaaccaactgagctacgtagccaTCTTTTTTTTCGAGTTACCTTATCAGCGTGGCTGGGCGCATTGTGCGTCTAGAGCCTTGCAGCGTCAccctctttttaccgg                                                                                                                                                              >  2:33048‑M2/169‑245 (MQ=255)                                                                                                        acacCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTg                                                                                                                                     >  2:62379/1‑251 (MQ=255)                                                                                                                              aaaTCTGGTGCGTCTACCAATTCCGCCACTACCGAAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTgg                                                                                                                <  1:337710/250‑1 (MQ=255)                                                                                                                                    ggTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCtat                                                                                                          >  1:279380/1‑250 (MQ=255)                                                                                                                                      ggctactcccaaaatCGCCACGCCCCCAAAAAAAGAGTGTGGCGACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGAGGTGCTCTAACCAACGGAGCTACTTAGCCATCTTTTTTTTCGCGATACCGTATCGGCGTTGCGGGGCGCATGATGCGTATAGATCCTGGCAGCTTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTTACTTTTTTGTTAGGTTGCGATCAGCGTGGCGGTATAtt                                                                                                       <  2:146821/237‑1 (MQ=25)                                                                                                                                        ggtttagcagaatctacacgatcgaaaaaaaaGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCg                                                                                                     <  1:33048/226‑1 (MQ=255)                                                                                                                                                         aCTCCCGAAAAAAAAGATGGTGGATACGACGGGCTTCGAACCTCTGACCCCCTACTTATGAGTGATGTGATCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAACGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACtt                                                                                    >  2:48827/1‑251 (MQ=255)                                                                                                                                                              cGCAAAAAAATATGGTGGCTACGACGGGATTCGAACCGGTGTCCCCATCATTATTAGTGATGTGCTCTAACCAACTGAGCTACTTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTATGTTGCGAACATCGTGGTGCTATATTCGTCAATTATTTTTTGCTgtgtgt                                                                               <  1:285908/251‑1 (MQ=255)                                                                                                                                                                 aaaaaaaGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGtttt                                                                            <  2:279380/251‑1 (MQ=255)                                                                                                                                                                       aGATGGAGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTccc                                                                       >  2:247663/1‑250 (MQ=255)                                                                                                                                                                         aTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTATCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATAGTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCAcc                                                                    <  1:123831/251‑1 (MQ=255)                                                                                                                                                                                    gacgGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCAtt                                                         >  2:267723/1‑251 (MQ=255)                                                                                                                                                                                    gacgGGATTCGAAACTGTGACCCCATAATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATAACTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCCACCTCTTTTTCAAGGAAAATTGCGCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGATATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCAtt                                                         >  1:57136/1‑251 (MQ=255)                                                                                                                                                                                               aaCCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCATTCTTTTGTCAt                                               >  1:275280/1‑250 (MQ=255)                                                                                                                                                                                                    gtgACCCCATCATTATGAGTGATGTGCTCTATCCATCTGAGCTACGTAGTCATCTTTTTTTTCGCGATACCTTATCGGCGTGGCGTGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCCCTTTTTCAAGGAAAATTGCTCTAAAGTGACTGTTTGGGGAGTTTGCGATGGGCGTGGCGCTATATTCGTCAATTTTTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCATACTTTTGTCATACAgg                                          <  1:166372/250‑1 (MQ=255)                                                                                                                                                                                                            atcatTATGAGTGATGAGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCATTCTTTTGTCATACAGGATGAAATTc                                 >  2:42332/1‑251 (MQ=255)                                                                                                                                                                                                                                   aCCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCCCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCATTCTTTTGTCATACAGGATGAAATTCGGAATTTAACAATAGTGGTggg           >  1:38937/1‑250 (MQ=255)                                                                                                                                                                                                                                   aCCAAATGAGCTACGTAGGCATCTTTTTTTTCGCGATACCTTATAGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGAAGCGTCAACATCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGAGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGATTTTTCCCACCCTACAGCCATTCTTTTGTCATACAGGATGAAATTCGGAATTAAACAATAGTgggggg           >  2:340229/1‑250 (MQ=255)                                                                                                                                                                                                                                          gAGCTACGTAGCCATCTTTTTTTGCGCGATCCCTTATCGTCGTTGCGGGGCGCATTATGCGTATAGAGCCTGGCAGTGTCAACCTCTTTTACAAGGAAAATTGCTCGAAAGTTACTGTTTGGTTAGGTTGCGATCAGCGTGGCGCTATATTCGTCAATTAGTGTTTACTTGTTGTTTTTTCCCACCCTACAGCCATGCTTTTGTGATACAGTATGAAAAACGGAATTTAACAATAGTGGTGGGAGATTAAt   <  2:32060/251‑1 (MQ=255)                                                                                                                                                                                                                                           aGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCATTCTTTTGTCATACAGGATGAAATTCGGAATTTAACAATAGTGGTGGGAAATTAATc  <  1:62379/251‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                              CCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCACCCTACAGCCATTCTTTTGTCATACAGGATGAAATTCGGAATTTAACAATAGTGGTGGGAAATTAATC  >  NC_000913/696888‑697372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.