New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 696741	18 (0.510)	3 (0.130)	3/332	2.0	17.5%	intergenic (‑1/+15)	metU/glnW	tRNA‑Met/tRNA‑Gln
	?	NC_000913	697135 =	16 (0.670)					intergenic (‑2/+378)	metT/asnB	tRNA‑Met/asparagine synthetase B
Rejected: Frequency below/above cutoff threshold.

GGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTG  >  NC_000913/696509‑696967                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                   ggTGCACTTACAAGGTCAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGCTTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGc                                                                                                                                                                                                                  >  1:114969/1‑251 (MQ=255)  gTGCACTTTCAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCt                                                                                                                                                                                                                 <  1:246853/251‑1 (MQ=255)    gaaCTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCTAGATTGTTTCTGCGATGGCTg                                                                                                                                                                                                                <  2:45705/248‑1 (MQ=255)         tACAAGGCAAGCGTCTTGACTACATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGGGACCCCATCATTCTGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGCTTGTTTCTTCGATGGCTTGGGTAc                                                                                                                                                                                                          >  1:261812/1‑251 (MQ=38)                     gTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCAGGAATCAGAATCCGGTGCCTTACCGCTTGGAGATACCCCAACAAATTGGTTTTGCATTTGCCGCACATATTCGATCCATTCAGAATTTGGTGGCCACGACGGGATTCGCACCTGAGACACCATCATTATGAGTGATGTGCTCTCACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTGCCTGGATTCGacc                                                                                                                                                                                              >  1:32060/1‑249 (MQ=37)                           aaTAAATTGGCTGGGGTACGAGGATTCGAACCTCGGACTGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGCCCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCCtattttttttcgcgctaccttatccgcgttgtgggacgcatt                                                                                                                                                                                          >  2:155500‑M1/1‑207 (MQ=255)                                       ggggTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTAt                                                                                                                                                                              <  1:24939/249‑1 (MQ=255)                                         ggTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATCCCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGCGCTCCGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCaaa                                                                                                                                                                          <  2:288909/251‑1 (MQ=255)                                                            gtgaaTGCCGGAAGCAGGATTCGGACCCTTACCGCTTGGCGATACCCCATCAAATTGGTTTTGATTTTCCCGATCATCTTCGCTACAAACAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAtcttttttttcgcgataccttatcggcgttgcggggcgcattatgcgtatagagccttgcagcgtcaacctcttttt                                                                                                                                                       <  2:165262‑M1/249‑78 (MQ=255)                                                            cGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCtt                                                                                                                                                       <  1:349058/251‑1 (MQ=255)                                                                  gCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCACCAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAtcttttttttcgagttaccttatcagcgtggctgggcgcattgtgcgtctagagccttgcagcgtcaccctctttttaccgg                                                                                                                                                  >  2:33048‑M1/1‑168 (MQ=255)                                                                    cGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATAc                                                                                                                                               <  1:268322/251‑1 (MQ=255)                                                                                   gTGCCTTACCGCTTGGCGAGTCCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCAGCATTATGAGTGATGTGCGCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTACGATGGCGGGGGTACCTGGATGCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCg                                                                                                                                <  2:114969/251‑1 (MQ=38)                                                                                                                          gAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGCAGAAGATGGCTGGGGTACCTgg                                                                                         >  2:110421/1‑251 (MQ=255)                                                                                                                                        tatTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAggg                                                                            >  1:146092/1‑250 (MQ=255)                                                                                                                                           tCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGCACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAATCGAGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGCTTCGAACCAGGGAATg                                                                        >  1:43900/1‑251 (MQ=255)                                                                                                                                                                   tACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCtt                                                 >  1:61979/1‑250 (MQ=255)                                                                                                                                                                      gacgGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCGATAACCGGTCGGTGAACCGCTTACTCGCAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGTAATTCCGGTATCAAAAACCGGTGCCTTCCCg                                             >  1:175879/1‑251 (MQ=255)                                                                                                                                                                                         aCCCCATCATTATGAGTGATGTGCTCTAAACAACTGAGCTGCGTAGCCAGATTGTCTCTTCGATGGCTGGGGTCCCTGGATCCGAACCAGGGAAGGCCGGTAACAAAAGCCGGTGCCTTACCGAGTGGCGATCCCCAAATAACCGGGCGGTGAACCGCGTACGCTAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCg                          <  2:61979/251‑1 (MQ=25)                                                                                                                                                                                                   tATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGCAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGGATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATCCCCCATCCGAACAACGCtt                >  1:17460/1‑251 (MQ=255)                                                                                                                                                                                                                    aaCCATCTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTg  <  1:110421/248‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                   GGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTG  >  NC_000913/696509‑696967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.