New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2067353	NA (NA)	3 (0.090)	3/484	2.4	13.1%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	3658105 =	20 (0.620)					intergenic (‑51/‑261)	arrS/gadE	small regulatory RNA ArrS/DNA‑binding transcriptional activator GadE
Rejected: Frequency below/above cutoff threshold.

ATTTTTTTGCAACTGGCGTTGATTACATTGCATAAATATCCGTGTCTCCAGACGCTATATAAAAACCTGAAGACATGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAAATAATGAAAAGGATGACATATTCGAAACGATAACGGCTA  >  NC_000913/3657874‑3658354                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          aTTTTTTTGCAACTGGCGTTGATTACATTGCATAAATATCCGTGTCTCCAGACGCTATATAAAAACCTGAAGACATGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATc                                                                                                                                                                                                                                        <  2:152446/251‑1 (MQ=255)    tttttACAACTGACGTTGATTACATTGCATAAATAACCGTGTCTCAAGACGCTATATAAAAACCTGAAGACATGAATTCGTTATTTACTCAGGTAATTTAAATGAGTTCAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCAAAACAAGGAGACTCGCTATTTAAATCGGATTACATTTTATCTTTAGTAATATTATTCTGAGATCACAAACTGCTTATTGATAAGTTATTCTTGTGCAGAAATcagc                                                                                                                                                                                                                                     >  2:270416/1‑248 (MQ=255)               ggCGTTGATTACATTGCATAAATATCCGTGTCTCCAGACGCTATATAAAAACCTGAAGACATGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACt                                                                                                                                                                                                                          >  1:317394/1‑251 (MQ=255)                         aCATTGCATAAATATCCGTGTCTCCAGACGCTATATAAAAACCTGAAGACATGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGc                                                                                                                                                                                                                <  2:34417/251‑1 (MQ=255)                                    ggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGc                                                                                                                                                                                                     >  1:96426‑M2/197‑251 (MQ=255)                                              ctcCAGACGCTATATAAAAACCTGAAGACCTGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATaacaac                                                                                                                                                                                           >  1:114576/1‑251 (MQ=255)                                                                 aCCTGAAGACATGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAACGCTGGCAATCCAAGTGCCAGCTTAAGTCTAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGAt                                                                                                                                                                        <  2:214879/251‑1 (MQ=255)                                                                  ggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATc                                                                                                                                                                       <  2:96426‑M2/85‑1 (MQ=255)                                                                               aTGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTg                                                                                                                                                          <  1:281419/251‑1 (MQ=255)                                                                                            tCAGGAAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGAGTGATGGATaa                                                                                                                                              >  2:114122/1‑250 (MQ=255)                                                                                                                           ggCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTGAACTGTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATGCTGGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACg                                                                                                                <  1:42928/249‑1 (MQ=255)                                                                                                                              aaTCCAATTGCCAGCTTAACTCGAAACAAGGAGACTCGATATTTAAATCGAATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTAtt                                                                                                            >  1:111344/1‑250 (MQ=255)                                                                                                                                                      aaCAAGGAGACTCGATATTTCACTCGGATTAAATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGTGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGATCACGAAGGGTAAAGTTCTtat                                                                                   >  1:238602/1‑251 (MQ=255)                                                                                                                                                         aaGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAgg                                                                                >  1:208932/1‑251 (MQ=255)                                                                                                                                                                  cGATATTTAAATCGGCTTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACt                                                                        >  1:90977/1‑250 (MQ=255)                                                                                                                                                                               ggATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACCACCAGGAATCTTACTTAGGATCAATATATGGAATGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACg                                                           >  2:317136/1‑250 (MQ=255)                                                                                                                                                                                   atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGAtt                                                        <  1:283861‑M2/196‑1 (MQ=255)                                                                                                                                                                                        tttAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACTATTCGGACa                                                  <  2:111484/250‑1 (MQ=255)                                                                                                                                                                                            aCTTTAGTAATATTCTTCAGAGATCACAAAATGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAAGCGTTTACTATATTGAACAACGATTCGGACAAGGAt                                             >  1:256976/1‑251 (MQ=255)                                                                                                                                                                                               ttAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATg                                            <  1:133750/249‑1 (MQ=255)                                                                                                                                                                                                    aaTATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAaata                                      <  1:81440/250‑1 (MQ=255)                                                                                                                                                                                                        ttcttcAGAGATCCCAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGCTGTAAATAATGa                                  >  2:165878/1‑250 (MQ=255)                                                                                                                                                                                                            tcAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAAATAATGAAAAg                              <  1:251486/250‑1 (MQ=255)                                                                                                                                                                                                                                        cTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAAATAATGAAAAGGATGACATATTCGAAACGATAACGGCTa  >  1:302621/1‑250 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          ATTTTTTTGCAACTGGCGTTGATTACATTGCATAAATATCCGTGTCTCCAGACGCTATATAAAAACCTGAAGACATGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAAATAATGAAAAGGATGACATATTCGAAACGATAACGGCTA  >  NC_000913/3657874‑3658354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.