mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 313,543 | 0 | G | A | 58.3% | 34.0 / 74.1 | 60 | intergenic (‑301/‑1748) | ykgR/insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| * | NC_000913 | 246,747 | 0 | G | T | 44.6% | 28.7 / 79.5 | 65 | S12S (TCG→TCT) | yafL | NlpC/P60 family protein YafL |
| * | NC_000913 | 377,402 | 0 | G | A | 40.6% | 48.7 / 74.2 | 65 | intergenic (+91/+133) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,407 | 0 | C | T | 40.3% | 50.6 / 74.7 | 63 | intergenic (+96/+128) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,423 | 0 | G | T | 38.7% | 60.7 / 68.3 | 62 | intergenic (+112/+112) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,425 | 0 | C | T | 38.1% | 58.9 / 69.8 | 63 | intergenic (+114/+110) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,452 | 0 | G | A | 36.4% | 70.0 / 58.9 | 57 | intergenic (+141/+83) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,431 | 1 | . | T | 35.5% | 104.3 / 111.3 | 62 | intergenic (+120/+104) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,432 | 0 | C | G | 35.5% | 92.6 / 78.1 | 63 | intergenic (+121/+103) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 332,991 | 0 | G | T | 34.3% | 26.9 / 10.6 | 35 | L207F (TTG→TTT) | pdeL | DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL |
| * | NC_000913 | 377,465 | 0 | G | T | 33.9% | 86.2 / 47.6 | 56 | intergenic (+154/+70) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,451 | 0 | T | . | 33.3% | 120.5 / 72.1 | 58 | intergenic (+140/+84) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,450 | 0 | T | G | 32.8% | 84.4 / 50.7 | 58 | intergenic (+139/+85) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 300,126 | 0 | A | G | 26.3% | 155.0 / 11.1 | 97 | L270P (CTC→CCC) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| * | NC_000913 | 354,288 | 0 | T | G | 25.7% | 139.5 / 10.4 | 71 | V528G (GTG→GGG) | prpE | propionyl‑CoA synthetase |
| * | NC_000913 | 4,592,290 | 0 | T | G | 25.5% | 68.4 / 10.4 | 47 | F212V (TTC→GTC) | tsr | methyl‑accepting chemotaxis protein Tsr |