mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 387 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,331,557 | 0 | C | T | 79.1% | 67.0 / 19.0 | 45 | G352G (GGC→GGT) | proP | osmolyte:H(+) symporter ProP |
| * | NC_000913 | 4,359,291 | 0 | C | T | 79.1% | 79.3 / 16.9 | 43 | P247P (CCG→CCA) | cadB | lysine:cadaverine antiporter |
| * | NC_000913 | 4,343,194 | 0 | C | T | 78.4% | 62.4 / 15.8 | 38 | D428D (GAC→GAT) | melA | alpha‑galactosidase |
| * | NC_000913 | 4,312,730 | 0 | A | T | 77.8% | 64.7 / 21.4 | 36 | S88T (TCT→ACT) | alsR | DNA‑binding transcriptional repressor AlsR |
| * | NC_000913 | 872,240 | 0 | G | T | 77.4% | 40.2 / 13.5 | 31 | A117A (GCG→GCT) | gsiD | glutathione ABC transporter membrane subunit GsiD |
| * | NC_000913 | 4,305,863 | 0 | A | G | 77.2% | 91.1 / 24.3 | 59 | N245N (AAT→AAC) | yjcS | linear primary‑alkylsulfatase |
| * | NC_000913 | 4,333,663 | 0 | G | A | 76.9% | 60.1 / 16.9 | 40 | D96D (GAC→GAT) | basR | DNA‑binding transcriptional dual regulator BasR |
| * | NC_000913 | 4,359,276 | 0 | C | T | 76.7% | 75.8 / 15.0 | 43 | A252A (GCG→GCA) | cadB | lysine:cadaverine antiporter |
| * | NC_000913 | 4,355,731 | 0 | A | G | 75.9% | 45.1 / 12.4 | 30 | T227T (ACT→ACC) | dtpC | dipeptide/tripeptide:H(+) symporter DtpC |
| * | NC_000913 | 4,359,240 | 0 | A | G | 75.7% | 63.5 / 15.4 | 38 | T264T (ACT→ACC) | cadB | lysine:cadaverine antiporter |
| * | NC_000913 | 4,333,624 | 0 | A | G | 75.0% | 64.3 / 19.6 | 41 | H109H (CAT→CAC) | basR | DNA‑binding transcriptional dual regulator BasR |
| * | NC_000913 | 4,342,666 | 0 | C | T | 75.0% | 51.4 / 19.3 | 36 | Y252Y (TAC→TAT) | melA | alpha‑galactosidase |
| * | NC_000913 | 4,334,353 | 0 | G | C | 74.4% | 76.0 / 26.1 | 40 | T413S (ACC→AGC) | eptA | phosphoethanolamine transferase EptA |
| * | NC_000913 | 4,342,633 | 0 | T | C | 74.4% | 55.8 / 19.7 | 40 | H241H (CAT→CAC) | melA | alpha‑galactosidase |
| * | NC_000913 | 4,344,423 | 0 | T | C | 74.3% | 54.6 / 13.8 | 36 | I352T (ATC→ACC) | melB | melibiose:H(+)/Na(+)/Li(+) symporter |
| * | NC_000913 | 4,354,417 | 0 | T | G | 74.2% | 47.7 / 15.9 | 31 | R101R (AGA→CGA) | lysU | lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase |
| * | NC_000913 | 4,348,226 | 0 | A | G | 73.3% | 97.7 / 26.9 | 60 | D173D (GAT→GAC) | dcuB | anaerobic C4‑dicarboxylate transporter DcuB |
| * | NC_000913 | 4,334,406 | 0 | A | C | 72.7% | 64.4 / 27.1 | 44 | P395P (CCT→CCG) | eptA | phosphoethanolamine transferase EptA |
| * | NC_000913 | 4,348,968 | 0 | T | A | 72.7% | 36.0 / 10.1 | 22 | intergenic (‑224/+347) | dcuB/dcuR | anaerobic C4‑dicarboxylate transporter DcuB/DNA‑binding transcriptional activator DcuR |
| * | NC_000913 | 4,305,803 | 0 | C | A | 72.6% | 76.0 / 31.1 | 62 | T265T (ACG→ACT) | yjcS | linear primary‑alkylsulfatase |