mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 321,260 | A→T | intergenic (+179/‑348) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| JC JC | 1,995,620 | IS5 (–) +4 bp | intergenic (‑261/‑32) | uvrY ← / → yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 354596 | 354669 | 74 | 105 [0] | [30] 31 | prpE/codB | propionyl‑CoA synthetase/cytosine transporter |
| * | * | ÷ | NC_000913 | 361657 | 362203 | 547 | 113 [0] | [0] 114 | [lacA]–[lacY] | [lacA],[lacY] |
| * | * | ÷ | NC_000913 | 1805110 | 1805246 | 137 | 31 [30] | [30] 36 | [yniD] | [yniD] |
| * | * | ÷ | NC_000913 | 3423884–3424232 | 3424432–3424239 | 8–549 | 31 [30] | [30] 31 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 3883307 | 3883561 | 255 | 31 [30] | [30] 31 | dnaA | chromosomal replication initiator protein DnaA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 113 (1.200) | 76/582 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 361656 | 0 (0.000) | coding (205/612 nt) | lacA | galactoside O‑acetyltransferase | |||||
| * | ? | NC_000913 | 70062 = | 102 (1.080) | 82 (0.940) +22 bp |
50/540 | 0.4 | 50.0% | intergenic (‑14/‑325) | araB/araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 367520 | 75 (0.790) | intergenic (‑10/+67) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR | |||||
| * | ? | NC_000913 | = 71265 | 107 (1.130) | 103 (1.090) | 59/584 | 0.3 | 65.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 354595 | 0 (0.000) | intergenic (+3/‑327) | prpE/codB | propionyl‑CoA synthetase/cytosine transporter | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 109 (1.150) | 69/584 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 362204 = | 0 (0.000) | coding (976/1254 nt) | lacY | lactose permease | |||||
| * | ? | NC_000913 | 1207790 = | 32 (0.340) | 68 (0.760) | 47/552 | 0.5 | 66.9% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 37 (0.410) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 35 (0.370) | 52 (0.580) | 41/552 | 0.8 | 59.7% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 37 (0.410) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||