#=GENOME_DIFF	1.0
#=CREATED	03:54:36 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9772_S44_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9772_S44_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9772_S44_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9772_S44_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9772_S44_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	468929451
#=CONVERTED-READS	1597801
#=INPUT-BASES	469015980
#=INPUT-READS	1598098
#=MAPPED-BASES	438336715
#=MAPPED-READS	1491819
DEL	1	163,178	NC_000913	257908	776
SNP	2	24	NC_000913	309381	T
SNP	3	25	NC_000913	309985	A
SNP	4	26	NC_000913	321260	T
DEL	5	166,198	NC_000913	1299499	1199
DEL	6	168,203	NC_000913	1978503	776
MOB	7	201,204	NC_000913	1995620	IS5	-1	4
DEL	8	134,135	NC_000913	2173363	2
INS	9	149	NC_000913	3560455	G
INS	10	159,160	NC_000913	4296381	GC
RA	11	.	NC_000913	58065	0	C	A	bias_e_value=0.0346332	bias_p_value=7.4614e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.2	fisher_strand_p_value=3.26651e-10	frequency=3.511e-01	ks_quality_p_value=1	major_base=C	major_cov=24/37	major_frequency=6.489e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.511e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=24/37	total_cov=57/37
RA	12	.	NC_000913	70289	0	G	T	bias_e_value=4372350	bias_p_value=0.941981	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.4	fisher_strand_p_value=0.684908	frequency=5.275e-01	ks_quality_p_value=0.991817	major_base=T	major_cov=56/59	major_frequency=5.275e-01	minor_base=G	minor_cov=47/56	new_cov=56/59	polymorphism_frequency=5.275e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=47/56	total_cov=103/115
RA	13	.	NC_000913	70371	0	T	C	bias_e_value=2894560	bias_p_value=0.623605	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.0	fisher_strand_p_value=0.59036	frequency=5.138e-01	ks_quality_p_value=0.457458	major_base=C	major_cov=56/56	major_frequency=5.138e-01	minor_base=T	minor_cov=49/57	new_cov=56/56	polymorphism_frequency=5.138e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=49/57	total_cov=106/113
RA	14	.	NC_000913	70434	0	C	T	bias_e_value=2606960	bias_p_value=0.561645	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.0	fisher_strand_p_value=0.334356	frequency=5.166e-01	ks_quality_p_value=0.674987	major_base=T	major_cov=55/54	major_frequency=5.166e-01	minor_base=C	minor_cov=44/58	new_cov=55/54	polymorphism_frequency=5.166e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=44/58	total_cov=99/113
RA	15	.	NC_000913	70581	0	C	T	bias_e_value=3701570	bias_p_value=0.797468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.5	fisher_strand_p_value=0.435444	frequency=4.639e-01	ks_quality_p_value=1	major_base=C	major_cov=43/46	major_frequency=5.361e-01	minor_base=T	minor_cov=32/45	new_cov=32/45	polymorphism_frequency=4.639e-01	polymorphism_score=248.3	prediction=polymorphism	ref_cov=43/46	total_cov=75/92
RA	16	.	NC_000913	70740	0	T	G	bias_e_value=1625800	bias_p_value=0.350263	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.6	fisher_strand_p_value=0.137832	frequency=4.238e-01	ks_quality_p_value=0.789754	major_base=T	major_cov=52/35	major_frequency=5.762e-01	minor_base=G	minor_cov=30/34	new_cov=30/34	polymorphism_frequency=4.238e-01	polymorphism_score=209.3	prediction=polymorphism	ref_cov=52/35	total_cov=83/69
RA	17	.	NC_000913	71079	0	C	T	bias_e_value=2882900	bias_p_value=0.621095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.9	fisher_strand_p_value=0.376332	frequency=5.108e-01	ks_quality_p_value=0.712542	major_base=T	major_cov=56/39	major_frequency=5.108e-01	minor_base=C	minor_cov=47/44	new_cov=56/39	polymorphism_frequency=5.108e-01	polymorphism_score=292.3	prediction=polymorphism	ref_cov=47/44	total_cov=103/83
RA	18	.	NC_000913	71082	0	T	C	bias_e_value=3111090	bias_p_value=0.670255	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.0	fisher_strand_p_value=0.307607	frequency=5.026e-01	ks_quality_p_value=1	major_base=C	major_cov=56/39	major_frequency=5.026e-01	minor_base=T	minor_cov=48/46	new_cov=56/39	polymorphism_frequency=5.026e-01	polymorphism_score=314.7	prediction=polymorphism	ref_cov=48/46	total_cov=104/85
RA	19	.	NC_000913	71085	0	T	C	bias_e_value=2737910	bias_p_value=0.589858	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.9	fisher_strand_p_value=0.313738	frequency=4.948e-01	ks_quality_p_value=0.781509	major_base=T	major_cov=50/47	major_frequency=5.052e-01	minor_base=C	minor_cov=56/39	new_cov=56/39	polymorphism_frequency=4.948e-01	polymorphism_score=311.2	prediction=polymorphism	ref_cov=50/47	total_cov=106/86
RA	20	.	NC_000913	71109	0	T	C	bias_e_value=1812210	bias_p_value=0.390423	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.1	fisher_strand_p_value=0.192788	frequency=4.767e-01	ks_quality_p_value=0.662152	major_base=T	major_cov=50/51	major_frequency=5.233e-01	minor_base=C	minor_cov=55/37	new_cov=55/37	polymorphism_frequency=4.767e-01	polymorphism_score=297.6	prediction=polymorphism	ref_cov=50/51	total_cov=105/88
RA	21	.	NC_000913	71175	0	A	G	bias_e_value=1503510	bias_p_value=0.323917	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.0972624	frequency=5.049e-01	ks_quality_p_value=1	major_base=G	major_cov=57/47	major_frequency=5.049e-01	minor_base=A	minor_cov=44/58	new_cov=57/47	polymorphism_frequency=5.049e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=44/58	total_cov=102/105
RA	22	.	NC_000913	71214	0	T	C	bias_e_value=430749	bias_p_value=0.0928008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.3	fisher_strand_p_value=0.0186219	frequency=4.833e-01	ks_quality_p_value=1	major_base=T	major_cov=40/68	major_frequency=5.167e-01	minor_base=C	minor_cov=54/47	new_cov=54/47	polymorphism_frequency=4.833e-01	polymorphism_score=307.8	prediction=polymorphism	ref_cov=40/68	total_cov=94/115
RA	23	.	NC_000913	225579	0	C	A	bias_e_value=5.24423	bias_p_value=1.12982e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.2	fisher_strand_p_value=6.43442e-08	frequency=2.897e-01	ks_quality_p_value=1	major_base=C	major_cov=38/38	major_frequency=7.103e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.897e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=38/38	total_cov=69/38
RA	24	.	NC_000913	309381	0	C	T	consensus_score=332.7	frequency=1	major_base=T	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	25	.	NC_000913	309985	0	T	A	bias_e_value=3853480	bias_p_value=0.830196	consensus_score=294.3	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=0.987565	major_base=A	major_cov=42/46	major_frequency=9.888e-01	minor_base=.	minor_cov=1/0	new_cov=42/46	polymorphism_frequency=9.888e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	26	.	NC_000913	321260	0	A	T	consensus_score=502.2	frequency=1	major_base=T	major_cov=65/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/77
RA	27	.	NC_000913	581115	0	C	A	bias_e_value=27758.8	bias_p_value=0.00598037	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.6	fisher_strand_p_value=0.00171705	frequency=3.361e-01	ks_quality_p_value=0.423372	major_base=C	major_cov=49/30	major_frequency=6.639e-01	minor_base=A	minor_cov=12/28	new_cov=12/28	polymorphism_frequency=3.361e-01	polymorphism_score=111.8	prediction=polymorphism	ref_cov=49/30	total_cov=61/58
RA	28	.	NC_000913	581121	0	A	C	bias_e_value=31057.6	bias_p_value=0.00669106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.9	fisher_strand_p_value=0.000826191	frequency=3.622e-01	ks_quality_p_value=1	major_base=A	major_cov=52/29	major_frequency=6.378e-01	minor_base=C	minor_cov=15/31	new_cov=15/31	polymorphism_frequency=3.622e-01	polymorphism_score=142.1	prediction=polymorphism	ref_cov=52/29	total_cov=67/60
RA	29	.	NC_000913	581127	0	G	A	bias_e_value=19099.5	bias_p_value=0.00411482	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.1	fisher_strand_p_value=0.000510665	frequency=3.798e-01	ks_quality_p_value=0.931446	major_base=G	major_cov=52/28	major_frequency=6.202e-01	minor_base=A	minor_cov=16/33	new_cov=16/33	polymorphism_frequency=3.798e-01	polymorphism_score=154.9	prediction=polymorphism	ref_cov=52/28	total_cov=68/61
RA	30	.	NC_000913	581130	0	G	A	bias_e_value=18205	bias_p_value=0.00392209	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.7	fisher_strand_p_value=0.000989506	frequency=3.798e-01	ks_quality_p_value=0.455333	major_base=G	major_cov=51/29	major_frequency=6.202e-01	minor_base=A	minor_cov=16/33	new_cov=16/33	polymorphism_frequency=3.798e-01	polymorphism_score=155.2	prediction=polymorphism	ref_cov=51/29	total_cov=67/62
RA	31	.	NC_000913	581139	0	C	A	bias_e_value=96345.1	bias_p_value=0.0207566	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.4	fisher_strand_p_value=0.00375236	frequency=3.984e-01	ks_quality_p_value=0.814625	major_base=C	major_cov=48/29	major_frequency=6.016e-01	minor_base=A	minor_cov=18/33	new_cov=18/33	polymorphism_frequency=3.984e-01	polymorphism_score=138.1	prediction=polymorphism	ref_cov=48/29	total_cov=66/62
RA	32	.	NC_000913	581141	0	G	A	bias_e_value=12747.9	bias_p_value=0.00274642	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.1	fisher_strand_p_value=0.00100909	frequency=3.828e-01	ks_quality_p_value=0.298874	major_base=G	major_cov=50/29	major_frequency=6.172e-01	minor_base=A	minor_cov=16/33	new_cov=16/33	polymorphism_frequency=3.828e-01	polymorphism_score=155.6	prediction=polymorphism	ref_cov=50/29	total_cov=66/62
RA	33	.	NC_000913	581145	0	C	T	bias_e_value=114134	bias_p_value=0.0245891	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.9	fisher_strand_p_value=0.0037306	frequency=3.664e-01	ks_quality_p_value=1	major_base=C	major_cov=50/33	major_frequency=6.336e-01	minor_base=T	minor_cov=16/32	new_cov=16/32	polymorphism_frequency=3.664e-01	polymorphism_score=146.0	prediction=polymorphism	ref_cov=50/33	total_cov=66/65
RA	34	.	NC_000913	581154	0	A	G	bias_e_value=63124.4	bias_p_value=0.0135996	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.7	fisher_strand_p_value=0.00213371	frequency=3.788e-01	ks_quality_p_value=0.875109	major_base=A	major_cov=50/32	major_frequency=6.212e-01	minor_base=G	minor_cov=16/34	new_cov=16/34	polymorphism_frequency=3.788e-01	polymorphism_score=148.3	prediction=polymorphism	ref_cov=50/32	total_cov=67/66
RA	35	.	NC_000913	581175	0	T	C	bias_e_value=44578.1	bias_p_value=0.00960394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.3	fisher_strand_p_value=0.00124973	frequency=3.939e-01	ks_quality_p_value=1	major_base=T	major_cov=50/30	major_frequency=6.061e-01	minor_base=C	minor_cov=17/35	new_cov=17/35	polymorphism_frequency=3.939e-01	polymorphism_score=158.5	prediction=polymorphism	ref_cov=50/30	total_cov=67/65
RA	36	.	NC_000913	581178	0	T	G	bias_e_value=9464.65	bias_p_value=0.00203907	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.3	fisher_strand_p_value=0.000580384	frequency=4.062e-01	ks_quality_p_value=0.372163	major_base=T	major_cov=49/27	major_frequency=5.938e-01	minor_base=G	minor_cov=17/35	new_cov=17/35	polymorphism_frequency=4.062e-01	polymorphism_score=165.7	prediction=polymorphism	ref_cov=49/27	total_cov=66/62
RA	37	.	NC_000913	581196	0	C	G	bias_e_value=38954.6	bias_p_value=0.00839239	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.8	fisher_strand_p_value=0.00146491	frequency=4.231e-01	ks_quality_p_value=0.730768	major_base=C	major_cov=46/29	major_frequency=5.769e-01	minor_base=G	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.231e-01	polymorphism_score=193.3	prediction=polymorphism	ref_cov=46/29	total_cov=65/66
RA	38	.	NC_000913	581199	0	A	C	bias_e_value=44830.3	bias_p_value=0.00965826	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.4	fisher_strand_p_value=0.00129644	frequency=4.231e-01	ks_quality_p_value=0.970242	major_base=A	major_cov=47/28	major_frequency=5.769e-01	minor_base=C	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.231e-01	polymorphism_score=182.1	prediction=polymorphism	ref_cov=47/28	total_cov=65/65
RA	39	.	NC_000913	581202	0	T	A	bias_e_value=65712.7	bias_p_value=0.0141572	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.1	fisher_strand_p_value=0.00244331	frequency=4.297e-01	ks_quality_p_value=0.800679	major_base=T	major_cov=44/29	major_frequency=5.703e-01	minor_base=A	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.297e-01	polymorphism_score=226.4	prediction=polymorphism	ref_cov=44/29	total_cov=62/66
RA	40	.	NC_000913	581206	0	A	G	bias_e_value=103877	bias_p_value=0.0223793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=0.00395955	frequency=4.331e-01	ks_quality_p_value=0.843327	major_base=A	major_cov=43/29	major_frequency=5.669e-01	minor_base=G	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.331e-01	polymorphism_score=167.6	prediction=polymorphism	ref_cov=43/29	total_cov=62/66
RA	41	.	NC_000913	581208	0	T	A	bias_e_value=118644	bias_p_value=0.0255608	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.9	fisher_strand_p_value=0.00395955	frequency=4.331e-01	ks_quality_p_value=0.986252	major_base=T	major_cov=43/29	major_frequency=5.669e-01	minor_base=A	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.331e-01	polymorphism_score=226.6	prediction=polymorphism	ref_cov=43/29	total_cov=61/66
RA	42	.	NC_000913	581214	0	T	C	bias_e_value=120835	bias_p_value=0.0260327	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.2	fisher_strand_p_value=0.00403975	frequency=4.365e-01	ks_quality_p_value=0.987779	major_base=T	major_cov=42/29	major_frequency=5.635e-01	minor_base=C	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.365e-01	polymorphism_score=171.5	prediction=polymorphism	ref_cov=42/29	total_cov=60/66
RA	43	.	NC_000913	581220	0	C	T	bias_e_value=110373	bias_p_value=0.0237789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=0.00719526	frequency=4.297e-01	ks_quality_p_value=0.498411	major_base=C	major_cov=42/31	major_frequency=5.703e-01	minor_base=T	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.297e-01	polymorphism_score=180.4	prediction=polymorphism	ref_cov=42/31	total_cov=61/68
RA	44	.	NC_000913	581223	0	C	T	bias_e_value=119572	bias_p_value=0.0257607	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.1	fisher_strand_p_value=0.00472333	frequency=4.264e-01	ks_quality_p_value=0.834407	major_base=C	major_cov=43/31	major_frequency=5.736e-01	minor_base=T	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.264e-01	polymorphism_score=180.3	prediction=polymorphism	ref_cov=43/31	total_cov=61/68
RA	45	.	NC_000913	581226	0	G	A	bias_e_value=100957	bias_p_value=0.0217502	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.1	fisher_strand_p_value=0.0068058	frequency=4.252e-01	ks_quality_p_value=0.474473	major_base=G	major_cov=43/30	major_frequency=5.748e-01	minor_base=A	minor_cov=18/36	new_cov=18/36	polymorphism_frequency=4.252e-01	polymorphism_score=179.3	prediction=polymorphism	ref_cov=43/30	total_cov=61/66
RA	46	.	NC_000913	581227	0	A	G	bias_e_value=149606	bias_p_value=0.0322312	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.8	fisher_strand_p_value=0.00719526	frequency=4.297e-01	ks_quality_p_value=0.714352	major_base=A	major_cov=42/31	major_frequency=5.703e-01	minor_base=G	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.297e-01	polymorphism_score=172.1	prediction=polymorphism	ref_cov=42/31	total_cov=60/68
RA	47	.	NC_000913	581229	0	C	T	bias_e_value=278484	bias_p_value=0.0599967	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.0119294	frequency=4.400e-01	ks_quality_p_value=0.910732	major_base=C	major_cov=39/31	major_frequency=5.600e-01	minor_base=T	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.400e-01	polymorphism_score=185.7	prediction=polymorphism	ref_cov=39/31	total_cov=57/68
RA	48	.	NC_000913	581232	0	C	T	bias_e_value=298441	bias_p_value=0.0642963	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.2	fisher_strand_p_value=0.0180272	frequency=4.435e-01	ks_quality_p_value=0.655922	major_base=C	major_cov=38/31	major_frequency=5.565e-01	minor_base=T	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=4.435e-01	polymorphism_score=179.9	prediction=polymorphism	ref_cov=38/31	total_cov=57/68
RA	49	.	NC_000913	581241	0	G	T	bias_e_value=908627	bias_p_value=0.195755	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.5	fisher_strand_p_value=0.051202	frequency=5.099e-01	ks_quality_p_value=0.950359	major_base=T	major_cov=32/45	major_frequency=5.099e-01	minor_base=G	minor_cov=43/31	new_cov=32/45	polymorphism_frequency=5.099e-01	polymorphism_score=257.2	prediction=polymorphism	ref_cov=43/31	total_cov=75/76
RA	50	.	NC_000913	581250	0	T	C	bias_e_value=1899540	bias_p_value=0.409237	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.7	fisher_strand_p_value=0.136956	frequency=5.473e-01	ks_quality_p_value=1	major_base=C	major_cov=35/46	major_frequency=5.473e-01	minor_base=T	minor_cov=38/29	new_cov=35/46	polymorphism_frequency=5.473e-01	polymorphism_score=223.7	prediction=polymorphism	ref_cov=38/29	total_cov=73/75
RA	51	.	NC_000913	581253	0	T	C	bias_e_value=119109	bias_p_value=0.025661	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.9	fisher_strand_p_value=0.0991498	frequency=5.442e-01	ks_quality_p_value=0.0395682	major_base=C	major_cov=34/46	major_frequency=5.442e-01	minor_base=T	minor_cov=38/29	new_cov=34/46	polymorphism_frequency=5.442e-01	polymorphism_score=221.4	prediction=polymorphism	ref_cov=38/29	total_cov=73/75
RA	52	.	NC_000913	581259	0	A	G	bias_e_value=2807620	bias_p_value=0.604875	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.6	fisher_strand_p_value=0.25604	frequency=5.467e-01	ks_quality_p_value=1	major_base=G	major_cov=38/44	major_frequency=5.467e-01	minor_base=A	minor_cov=38/30	new_cov=38/44	polymorphism_frequency=5.467e-01	polymorphism_score=211.4	prediction=polymorphism	ref_cov=38/30	total_cov=76/75
RA	53	.	NC_000913	581275	0	G	A	bias_e_value=2505040	bias_p_value=0.539686	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.4	fisher_strand_p_value=0.211252	frequency=5.629e-01	ks_quality_p_value=1	major_base=A	major_cov=40/54	major_frequency=5.629e-01	minor_base=G	minor_cov=39/34	new_cov=40/54	polymorphism_frequency=5.629e-01	polymorphism_score=224.7	prediction=polymorphism	ref_cov=39/34	total_cov=79/88
RA	54	.	NC_000913	581286	0	G	C	bias_e_value=756011	bias_p_value=0.162875	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.6	fisher_strand_p_value=0.207644	frequency=5.494e-01	ks_quality_p_value=0.183903	major_base=C	major_cov=36/53	major_frequency=5.494e-01	minor_base=G	minor_cov=37/36	new_cov=36/53	polymorphism_frequency=5.494e-01	polymorphism_score=243.0	prediction=polymorphism	ref_cov=37/36	total_cov=77/89
RA	55	.	NC_000913	581289	0	A	G	bias_e_value=2251830	bias_p_value=0.485136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.9	fisher_strand_p_value=0.43302	frequency=5.549e-01	ks_quality_p_value=0.41095	major_base=G	major_cov=40/51	major_frequency=5.549e-01	minor_base=A	minor_cov=37/36	new_cov=40/51	polymorphism_frequency=5.549e-01	polymorphism_score=229.5	prediction=polymorphism	ref_cov=37/36	total_cov=77/89
RA	56	.	NC_000913	581290	0	C	A	bias_e_value=3704400	bias_p_value=0.798077	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.2	fisher_strand_p_value=0.436178	frequency=5.542e-01	ks_quality_p_value=1	major_base=A	major_cov=40/52	major_frequency=5.542e-01	minor_base=C	minor_cov=37/37	new_cov=40/52	polymorphism_frequency=5.542e-01	polymorphism_score=231.3	prediction=polymorphism	ref_cov=37/37	total_cov=77/90
RA	57	.	NC_000913	581291	0	G	A	bias_e_value=1186500	bias_p_value=0.255621	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.0	fisher_strand_p_value=0.275328	frequency=5.663e-01	ks_quality_p_value=0.253522	major_base=A	major_cov=40/54	major_frequency=5.663e-01	minor_base=G	minor_cov=37/35	new_cov=40/54	polymorphism_frequency=5.663e-01	polymorphism_score=196.7	prediction=polymorphism	ref_cov=37/35	total_cov=77/91
RA	58	.	NC_000913	581295	0	T	C	bias_e_value=3728330	bias_p_value=0.803234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.5	fisher_strand_p_value=0.442448	frequency=5.529e-01	ks_quality_p_value=1	major_base=C	major_cov=40/54	major_frequency=5.529e-01	minor_base=T	minor_cov=37/39	new_cov=40/54	polymorphism_frequency=5.529e-01	polymorphism_score=252.0	prediction=polymorphism	ref_cov=37/39	total_cov=77/93
RA	59	.	NC_000913	581301	0	C	T	bias_e_value=3339900	bias_p_value=0.719549	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.9	fisher_strand_p_value=0.352017	frequency=5.503e-01	ks_quality_p_value=1	major_base=T	major_cov=39/54	major_frequency=5.503e-01	minor_base=C	minor_cov=38/38	new_cov=39/54	polymorphism_frequency=5.503e-01	polymorphism_score=229.0	prediction=polymorphism	ref_cov=38/38	total_cov=77/92
RA	60	.	NC_000913	581322	0	C	T	bias_e_value=3862670	bias_p_value=0.832177	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.9	fisher_strand_p_value=0.479825	frequency=6.262e-01	ks_quality_p_value=1	major_base=T	major_cov=61/73	major_frequency=6.262e-01	minor_base=C	minor_cov=41/39	new_cov=61/73	polymorphism_frequency=6.262e-01	polymorphism_score=224.6	prediction=polymorphism	ref_cov=41/39	total_cov=102/112
RA	61	.	NC_000913	581335	0	C	A	bias_e_value=2909470	bias_p_value=0.626819	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.4	fisher_strand_p_value=0.331317	frequency=6.290e-01	ks_quality_p_value=0.822562	major_base=A	major_cov=63/76	major_frequency=6.290e-01	minor_base=C	minor_cov=43/39	new_cov=63/76	polymorphism_frequency=6.290e-01	polymorphism_score=257.1	prediction=polymorphism	ref_cov=43/39	total_cov=106/116
RA	62	.	NC_000913	581337	0	G	A	bias_e_value=4165320	bias_p_value=0.897379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.7	fisher_strand_p_value=0.582649	frequency=6.233e-01	ks_quality_p_value=1	major_base=A	major_cov=64/75	major_frequency=6.233e-01	minor_base=G	minor_cov=42/42	new_cov=64/75	polymorphism_frequency=6.233e-01	polymorphism_score=244.2	prediction=polymorphism	ref_cov=42/42	total_cov=106/117
RA	63	.	NC_000913	581380	0	C	G	bias_e_value=2005740	bias_p_value=0.432118	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.3	fisher_strand_p_value=0.25832	frequency=5.971e-01	ks_quality_p_value=0.575687	major_base=G	major_cov=62/61	major_frequency=5.971e-01	minor_base=C	minor_cov=35/48	new_cov=62/61	polymorphism_frequency=5.971e-01	polymorphism_score=293.2	prediction=polymorphism	ref_cov=35/48	total_cov=98/114
RA	64	.	NC_000913	581381	0	A	G	bias_e_value=3174860	bias_p_value=0.683994	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.4	fisher_strand_p_value=0.321446	frequency=6.048e-01	ks_quality_p_value=0.993795	major_base=G	major_cov=62/65	major_frequency=6.048e-01	minor_base=A	minor_cov=34/49	new_cov=62/65	polymorphism_frequency=6.048e-01	polymorphism_score=269.3	prediction=polymorphism	ref_cov=34/49	total_cov=97/114
RA	65	.	NC_000913	581388	0	G	A	bias_e_value=1491980	bias_p_value=0.321432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.4	fisher_strand_p_value=0.0961985	frequency=5.314e-01	ks_quality_p_value=1	major_base=A	major_cov=52/41	major_frequency=5.314e-01	minor_base=G	minor_cov=35/47	new_cov=52/41	polymorphism_frequency=5.314e-01	polymorphism_score=248.6	prediction=polymorphism	ref_cov=35/47	total_cov=87/88
RA	66	.	NC_000913	581392	0	T	C	bias_e_value=1468570	bias_p_value=0.316391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.9	fisher_strand_p_value=0.0940555	frequency=5.260e-01	ks_quality_p_value=1	major_base=C	major_cov=50/41	major_frequency=5.260e-01	minor_base=T	minor_cov=34/48	new_cov=50/41	polymorphism_frequency=5.260e-01	polymorphism_score=261.9	prediction=polymorphism	ref_cov=34/48	total_cov=84/89
RA	67	.	NC_000913	581394	0	T	C	bias_e_value=1111600	bias_p_value=0.239483	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.7	fisher_strand_p_value=0.0674363	frequency=5.318e-01	ks_quality_p_value=0.946645	major_base=C	major_cov=51/41	major_frequency=5.318e-01	minor_base=T	minor_cov=33/48	new_cov=51/41	polymorphism_frequency=5.318e-01	polymorphism_score=272.3	prediction=polymorphism	ref_cov=33/48	total_cov=84/89
RA	68	.	NC_000913	581397	0	T	C	bias_e_value=910255	bias_p_value=0.196106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.7	fisher_strand_p_value=0.0488378	frequency=5.257e-01	ks_quality_p_value=0.998742	major_base=C	major_cov=51/41	major_frequency=5.257e-01	minor_base=T	minor_cov=33/50	new_cov=51/41	polymorphism_frequency=5.257e-01	polymorphism_score=277.4	prediction=polymorphism	ref_cov=33/50	total_cov=84/91
RA	69	.	NC_000913	581398	0	C	G	bias_e_value=694718	bias_p_value=0.14967	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.3	fisher_strand_p_value=0.0342081	frequency=5.287e-01	ks_quality_p_value=1	major_base=G	major_cov=51/41	major_frequency=5.287e-01	minor_base=C	minor_cov=32/50	new_cov=51/41	polymorphism_frequency=5.287e-01	polymorphism_score=294.5	prediction=polymorphism	ref_cov=32/50	total_cov=84/91
RA	70	.	NC_000913	581404	0	C	G	bias_e_value=349196	bias_p_value=0.075231	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.0	fisher_strand_p_value=0.0143452	frequency=5.349e-01	ks_quality_p_value=1	major_base=G	major_cov=51/41	major_frequency=5.349e-01	minor_base=C	minor_cov=29/51	new_cov=51/41	polymorphism_frequency=5.349e-01	polymorphism_score=288.4	prediction=polymorphism	ref_cov=29/51	total_cov=81/93
RA	71	.	NC_000913	581407	0	G	T	bias_e_value=364211	bias_p_value=0.0784657	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.9	fisher_strand_p_value=0.015112	frequency=5.287e-01	ks_quality_p_value=1	major_base=T	major_cov=51/41	major_frequency=5.287e-01	minor_base=G	minor_cov=30/52	new_cov=51/41	polymorphism_frequency=5.287e-01	polymorphism_score=274.3	prediction=polymorphism	ref_cov=30/52	total_cov=81/93
RA	72	.	NC_000913	581410	0	T	A	bias_e_value=356866	bias_p_value=0.0768833	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.8	fisher_strand_p_value=0.0149319	frequency=5.257e-01	ks_quality_p_value=0.986862	major_base=A	major_cov=51/41	major_frequency=5.257e-01	minor_base=T	minor_cov=30/53	new_cov=51/41	polymorphism_frequency=5.257e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=30/53	total_cov=81/94
RA	73	.	NC_000913	581412	0	G	T	bias_e_value=345967	bias_p_value=0.0745352	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.8	fisher_strand_p_value=0.0142583	frequency=5.318e-01	ks_quality_p_value=0.994614	major_base=T	major_cov=51/41	major_frequency=5.318e-01	minor_base=G	minor_cov=29/52	new_cov=51/41	polymorphism_frequency=5.318e-01	polymorphism_score=268.0	prediction=polymorphism	ref_cov=29/52	total_cov=80/94
RA	74	.	NC_000913	581413	0	C	T	bias_e_value=240052	bias_p_value=0.0517169	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.2	fisher_strand_p_value=0.00911754	frequency=5.318e-01	ks_quality_p_value=0.994614	major_base=T	major_cov=51/41	major_frequency=5.318e-01	minor_base=C	minor_cov=28/53	new_cov=51/41	polymorphism_frequency=5.318e-01	polymorphism_score=258.0	prediction=polymorphism	ref_cov=28/53	total_cov=79/95
RA	75	.	NC_000913	581416	0	A	G	bias_e_value=117334	bias_p_value=0.0252784	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.6	fisher_strand_p_value=0.00385425	frequency=5.318e-01	ks_quality_p_value=1	major_base=G	major_cov=51/41	major_frequency=5.318e-01	minor_base=A	minor_cov=27/54	new_cov=51/41	polymorphism_frequency=5.318e-01	polymorphism_score=268.0	prediction=polymorphism	ref_cov=27/54	total_cov=78/95
RA	76	.	NC_000913	581421	0	T	A	bias_e_value=255602	bias_p_value=0.0550669	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.9	fisher_strand_p_value=0.015112	frequency=5.287e-01	ks_quality_p_value=0.647607	major_base=A	major_cov=51/41	major_frequency=5.287e-01	minor_base=T	minor_cov=30/52	new_cov=51/41	polymorphism_frequency=5.287e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=30/52	total_cov=81/94
RA	77	.	NC_000913	581423	0	A	C	bias_e_value=364211	bias_p_value=0.0784657	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.2	fisher_strand_p_value=0.015112	frequency=5.287e-01	ks_quality_p_value=1	major_base=C	major_cov=51/41	major_frequency=5.287e-01	minor_base=A	minor_cov=30/52	new_cov=51/41	polymorphism_frequency=5.287e-01	polymorphism_score=239.7	prediction=polymorphism	ref_cov=30/52	total_cov=81/93
RA	78	.	NC_000913	581425	0	G	A	bias_e_value=487765	bias_p_value=0.105084	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.4	fisher_strand_p_value=0.0217689	frequency=5.318e-01	ks_quality_p_value=1	major_base=A	major_cov=51/41	major_frequency=5.318e-01	minor_base=G	minor_cov=30/51	new_cov=51/41	polymorphism_frequency=5.318e-01	polymorphism_score=256.7	prediction=polymorphism	ref_cov=30/51	total_cov=81/93
RA	79	.	NC_000913	581428	0	G	T	bias_e_value=509687	bias_p_value=0.109807	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.023012	frequency=5.287e-01	ks_quality_p_value=1	major_base=T	major_cov=51/41	major_frequency=5.287e-01	minor_base=G	minor_cov=31/51	new_cov=51/41	polymorphism_frequency=5.287e-01	polymorphism_score=274.0	prediction=polymorphism	ref_cov=31/51	total_cov=82/92
RA	80	.	NC_000913	581434	0	A	G	bias_e_value=445913	bias_p_value=0.0960677	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.4	fisher_strand_p_value=0.0355154	frequency=5.227e-01	ks_quality_p_value=0.547553	major_base=G	major_cov=51/41	major_frequency=5.227e-01	minor_base=A	minor_cov=33/51	new_cov=51/41	polymorphism_frequency=5.227e-01	polymorphism_score=284.2	prediction=polymorphism	ref_cov=33/51	total_cov=84/92
RA	81	.	NC_000913	581437	0	G	A	bias_e_value=1157090	bias_p_value=0.249283	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.8	fisher_strand_p_value=0.0674363	frequency=5.318e-01	ks_quality_p_value=1	major_base=A	major_cov=51/41	major_frequency=5.318e-01	minor_base=G	minor_cov=33/48	new_cov=51/41	polymorphism_frequency=5.318e-01	polymorphism_score=257.0	prediction=polymorphism	ref_cov=33/48	total_cov=84/90
RA	82	.	NC_000913	581440	0	C	G	bias_e_value=620296	bias_p_value=0.133637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.6	fisher_strand_p_value=0.0477141	frequency=5.260e-01	ks_quality_p_value=0.619442	major_base=G	major_cov=51/40	major_frequency=5.260e-01	minor_base=C	minor_cov=33/49	new_cov=51/40	polymorphism_frequency=5.260e-01	polymorphism_score=296.8	prediction=polymorphism	ref_cov=33/49	total_cov=84/90
RA	83	.	NC_000913	581443	0	C	G	bias_e_value=882908	bias_p_value=0.190214	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.3	fisher_strand_p_value=0.0473179	frequency=5.318e-01	ks_quality_p_value=0.989873	major_base=G	major_cov=51/41	major_frequency=5.318e-01	minor_base=C	minor_cov=32/49	new_cov=51/41	polymorphism_frequency=5.318e-01	polymorphism_score=288.3	prediction=polymorphism	ref_cov=32/49	total_cov=84/90
RA	84	.	NC_000913	581455	0	G	A	bias_e_value=1847940	bias_p_value=0.398121	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.5	fisher_strand_p_value=0.132769	frequency=5.254e-01	ks_quality_p_value=0.989846	major_base=A	major_cov=51/42	major_frequency=5.254e-01	minor_base=G	minor_cov=36/48	new_cov=51/42	polymorphism_frequency=5.254e-01	polymorphism_score=266.8	prediction=polymorphism	ref_cov=36/48	total_cov=87/90
RA	85	.	NC_000913	581458	0	T	C	bias_e_value=1515370	bias_p_value=0.326472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.4	fisher_strand_p_value=0.0983615	frequency=5.198e-01	ks_quality_p_value=1	major_base=C	major_cov=51/41	major_frequency=5.198e-01	minor_base=T	minor_cov=36/49	new_cov=51/41	polymorphism_frequency=5.198e-01	polymorphism_score=282.9	prediction=polymorphism	ref_cov=36/49	total_cov=87/90
RA	86	.	NC_000913	581460	0	C	A	bias_e_value=1865020	bias_p_value=0.401802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.4	fisher_strand_p_value=0.133241	frequency=5.198e-01	ks_quality_p_value=1	major_base=A	major_cov=51/41	major_frequency=5.198e-01	minor_base=C	minor_cov=37/48	new_cov=51/41	polymorphism_frequency=5.198e-01	polymorphism_score=295.2	prediction=polymorphism	ref_cov=37/48	total_cov=88/89
RA	87	.	NC_000913	581476	0	G	C	bias_e_value=3274700	bias_p_value=0.705504	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.1	fisher_strand_p_value=0.448464	frequency=4.971e-01	ks_quality_p_value=0.755478	major_base=G	major_cov=40/47	major_frequency=5.029e-01	minor_base=C	minor_cov=45/41	new_cov=45/41	polymorphism_frequency=4.971e-01	polymorphism_score=297.1	prediction=polymorphism	ref_cov=40/47	total_cov=89/91
RA	88	.	NC_000913	581482	0	A	G	bias_e_value=1887040	bias_p_value=0.406546	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.8	fisher_strand_p_value=0.135605	frequency=4.916e-01	ks_quality_p_value=1	major_base=A	major_cov=41/50	major_frequency=5.084e-01	minor_base=G	minor_cov=50/38	new_cov=50/38	polymorphism_frequency=4.916e-01	polymorphism_score=280.9	prediction=polymorphism	ref_cov=41/50	total_cov=91/88
RA	89	.	NC_000913	581485	0	C	G	bias_e_value=2263830	bias_p_value=0.487721	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.1	fisher_strand_p_value=0.179451	frequency=4.972e-01	ks_quality_p_value=1	major_base=C	major_cov=41/49	major_frequency=5.028e-01	minor_base=G	minor_cov=50/39	new_cov=50/39	polymorphism_frequency=4.972e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=41/49	total_cov=91/88
RA	90	.	NC_000913	581488	0	A	C	bias_e_value=2263830	bias_p_value=0.487721	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.4	fisher_strand_p_value=0.179451	frequency=4.972e-01	ks_quality_p_value=1	major_base=A	major_cov=41/49	major_frequency=5.028e-01	minor_base=C	minor_cov=50/39	new_cov=50/39	polymorphism_frequency=4.972e-01	polymorphism_score=289.3	prediction=polymorphism	ref_cov=41/49	total_cov=91/88
RA	91	.	NC_000913	581512	0	A	G	bias_e_value=2910170	bias_p_value=0.626968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.2	fisher_strand_p_value=0.272643	frequency=4.573e-01	ks_quality_p_value=1	major_base=A	major_cov=44/45	major_frequency=5.427e-01	minor_base=G	minor_cov=44/31	new_cov=44/31	polymorphism_frequency=4.573e-01	polymorphism_score=233.8	prediction=polymorphism	ref_cov=44/45	total_cov=88/76
RA	92	.	NC_000913	581513	0	C	T	bias_e_value=2910170	bias_p_value=0.626968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.7	fisher_strand_p_value=0.272643	frequency=4.573e-01	ks_quality_p_value=1	major_base=C	major_cov=44/45	major_frequency=5.427e-01	minor_base=T	minor_cov=44/31	new_cov=44/31	polymorphism_frequency=4.573e-01	polymorphism_score=249.8	prediction=polymorphism	ref_cov=44/45	total_cov=88/76
RA	93	.	NC_000913	581518	0	C	G	bias_e_value=2897430	bias_p_value=0.624224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.9	fisher_strand_p_value=0.270538	frequency=4.630e-01	ks_quality_p_value=1	major_base=C	major_cov=43/44	major_frequency=5.370e-01	minor_base=G	minor_cov=44/31	new_cov=44/31	polymorphism_frequency=4.630e-01	polymorphism_score=265.5	prediction=polymorphism	ref_cov=43/44	total_cov=87/75
RA	94	.	NC_000913	581524	0	G	A	bias_e_value=4479180	bias_p_value=0.964997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.0	fisher_strand_p_value=0.747358	frequency=4.295e-01	ks_quality_p_value=1	major_base=G	major_cov=45/44	major_frequency=5.705e-01	minor_base=A	minor_cov=36/31	new_cov=36/31	polymorphism_frequency=4.295e-01	polymorphism_score=215.3	prediction=polymorphism	ref_cov=45/44	total_cov=81/75
RA	95	.	NC_000913	581527	0	G	C	bias_e_value=4421570	bias_p_value=0.952585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.8	fisher_strand_p_value=0.747358	frequency=4.295e-01	ks_quality_p_value=0.947742	major_base=G	major_cov=45/44	major_frequency=5.705e-01	minor_base=C	minor_cov=36/31	new_cov=36/31	polymorphism_frequency=4.295e-01	polymorphism_score=236.3	prediction=polymorphism	ref_cov=45/44	total_cov=81/75
RA	96	.	NC_000913	581530	0	C	G	bias_e_value=4255290	bias_p_value=0.916763	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.9	fisher_strand_p_value=0.627098	frequency=4.342e-01	ks_quality_p_value=0.989953	major_base=C	major_cov=42/44	major_frequency=5.658e-01	minor_base=G	minor_cov=35/31	new_cov=35/31	polymorphism_frequency=4.342e-01	polymorphism_score=230.7	prediction=polymorphism	ref_cov=42/44	total_cov=79/75
RA	97	.	NC_000913	581548	0	C	T	bias_e_value=4638560	bias_p_value=0.999333	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.8	fisher_strand_p_value=1	frequency=3.929e-01	ks_quality_p_value=0.9637	major_base=C	major_cov=42/43	major_frequency=6.071e-01	minor_base=T	minor_cov=28/27	new_cov=28/27	polymorphism_frequency=3.929e-01	polymorphism_score=179.6	prediction=polymorphism	ref_cov=42/43	total_cov=71/70
RA	98	.	NC_000913	581550	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.2	fisher_strand_p_value=1	frequency=3.873e-01	ks_quality_p_value=1	major_base=G	major_cov=43/44	major_frequency=6.127e-01	minor_base=A	minor_cov=28/27	new_cov=28/27	polymorphism_frequency=3.873e-01	polymorphism_score=174.9	prediction=polymorphism	ref_cov=43/44	total_cov=71/71
RA	99	.	NC_000913	581554	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.7	fisher_strand_p_value=1	frequency=3.571e-01	ks_quality_p_value=1	major_base=C	major_cov=50/49	major_frequency=6.429e-01	minor_base=T	minor_cov=28/27	new_cov=28/27	polymorphism_frequency=3.571e-01	polymorphism_score=170.7	prediction=polymorphism	ref_cov=50/49	total_cov=78/76
RA	100	.	NC_000913	581560	0	C	A	bias_e_value=4561460	bias_p_value=0.982724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.1	fisher_strand_p_value=0.865774	frequency=3.510e-01	ks_quality_p_value=0.947094	major_base=C	major_cov=50/48	major_frequency=6.490e-01	minor_base=A	minor_cov=28/25	new_cov=28/25	polymorphism_frequency=3.510e-01	polymorphism_score=140.8	prediction=polymorphism	ref_cov=50/48	total_cov=78/73
RA	101	.	NC_000913	581569	0	G	C	bias_e_value=2157400	bias_p_value=0.464791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.8	fisher_strand_p_value=0.166386	frequency=2.791e-01	ks_quality_p_value=1	major_base=G	major_cov=48/45	major_frequency=7.209e-01	minor_base=C	minor_cov=24/12	new_cov=24/12	polymorphism_frequency=2.791e-01	polymorphism_score=119.2	prediction=polymorphism	ref_cov=48/45	total_cov=72/57
RA	102	.	NC_000913	581572	0	T	C	bias_e_value=3123350	bias_p_value=0.672897	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.7	fisher_strand_p_value=0.309855	frequency=2.640e-01	ks_quality_p_value=1	major_base=T	major_cov=48/44	major_frequency=7.360e-01	minor_base=C	minor_cov=21/12	new_cov=21/12	polymorphism_frequency=2.640e-01	polymorphism_score=84.6	prediction=polymorphism	ref_cov=48/44	total_cov=72/57
RA	103	.	NC_000913	581575	0	G	T	bias_e_value=1922700	bias_p_value=0.414228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.6	fisher_strand_p_value=0.167191	frequency=2.812e-01	ks_quality_p_value=0.834239	major_base=G	major_cov=48/44	major_frequency=7.188e-01	minor_base=T	minor_cov=24/12	new_cov=24/12	polymorphism_frequency=2.812e-01	polymorphism_score=101.2	prediction=polymorphism	ref_cov=48/44	total_cov=72/56
RA	104	.	NC_000913	581578	0	G	T	bias_e_value=1809850	bias_p_value=0.389916	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.7	fisher_strand_p_value=0.167191	frequency=2.812e-01	ks_quality_p_value=0.762053	major_base=G	major_cov=48/44	major_frequency=7.188e-01	minor_base=T	minor_cov=24/12	new_cov=24/12	polymorphism_frequency=2.812e-01	polymorphism_score=93.9	prediction=polymorphism	ref_cov=48/44	total_cov=72/56
RA	105	.	NC_000913	581593	0	C	T	bias_e_value=1002210	bias_p_value=0.215916	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.4	fisher_strand_p_value=0.0554808	frequency=2.072e-01	ks_quality_p_value=1	major_base=C	major_cov=48/40	major_frequency=7.928e-01	minor_base=T	minor_cov=18/5	new_cov=18/5	polymorphism_frequency=2.072e-01	polymorphism_score=54.0	prediction=polymorphism	ref_cov=48/40	total_cov=67/45
RA	106	.	NC_000913	581596	0	T	C	bias_e_value=997659	bias_p_value=0.214936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.6	fisher_strand_p_value=0.0551425	frequency=2.110e-01	ks_quality_p_value=1	major_base=T	major_cov=47/39	major_frequency=7.890e-01	minor_base=C	minor_cov=18/5	new_cov=18/5	polymorphism_frequency=2.110e-01	polymorphism_score=53.6	prediction=polymorphism	ref_cov=47/39	total_cov=65/44
RA	107	.	NC_000913	581602	0	C	A	bias_e_value=3281850	bias_p_value=0.707043	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.6	fisher_strand_p_value=0.34023	frequency=2.075e-01	ks_quality_p_value=1	major_base=C	major_cov=47/37	major_frequency=7.925e-01	minor_base=A	minor_cov=15/7	new_cov=15/7	polymorphism_frequency=2.075e-01	polymorphism_score=42.7	prediction=polymorphism	ref_cov=47/37	total_cov=62/44
RA	108	.	NC_000913	616105	0	C	A	bias_e_value=10.0399	bias_p_value=2.163e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.0	fisher_strand_p_value=1.28219e-07	frequency=2.588e-01	ks_quality_p_value=1	major_base=C	major_cov=25/38	major_frequency=7.412e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.588e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=25/38	total_cov=47/38
RA	109	.	NC_000913	710830	0	G	T	bias_e_value=0.0918187	bias_p_value=1.97815e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.2	fisher_strand_p_value=9.06516e-10	frequency=2.333e-01	ks_quality_p_value=1	major_base=G	major_cov=56/36	major_frequency=7.667e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.333e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=56/36	total_cov=56/64
RA	110	.	NC_000913	847955	0	G	A	bias_e_value=0.0964665	bias_p_value=2.07828e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.4	fisher_strand_p_value=9.54668e-10	frequency=2.538e-01	ks_quality_p_value=1	major_base=G	major_cov=53/44	major_frequency=7.462e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.538e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=53/44	total_cov=53/77
RA	111	.	NC_000913	848028	0	G	T	bias_e_value=0.0372467	bias_p_value=8.02446e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.2	fisher_strand_p_value=3.52475e-10	frequency=2.556e-01	ks_quality_p_value=1	major_base=G	major_cov=55/44	major_frequency=7.444e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.556e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=55/44	total_cov=55/78
RA	112	.	NC_000913	1015488	0	C	A	bias_e_value=2.03772	bias_p_value=4.39006e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.2	fisher_strand_p_value=2.36537e-08	frequency=2.720e-01	ks_quality_p_value=1	major_base=C	major_cov=47/44	major_frequency=7.280e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.720e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=47/44	total_cov=81/44
RA	113	.	NC_000913	1041299	0	C	A	bias_e_value=0.138353	bias_p_value=2.98068e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.0	fisher_strand_p_value=1.3934e-09	frequency=2.105e-01	ks_quality_p_value=1	major_base=C	major_cov=36/69	major_frequency=7.895e-01	minor_base=A	minor_cov=27/1	new_cov=27/1	polymorphism_frequency=2.105e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=36/69	total_cov=63/70
RA	114	.	NC_000913	1197261	0	G	T	bias_e_value=0.000541273	bias_p_value=1.16612e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.0	fisher_strand_p_value=4.29124e-12	frequency=2.707e-01	ks_quality_p_value=1	major_base=G	major_cov=59/38	major_frequency=7.293e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.707e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=59/38	total_cov=59/74
RA	115	.	NC_000913	1351463	0	C	A	bias_e_value=427.16	bias_p_value=9.20275e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.5	fisher_strand_p_value=7.16363e-06	frequency=3.523e-01	ks_quality_p_value=1	major_base=C	major_cov=34/23	major_frequency=6.477e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.523e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=34/23	total_cov=65/23
RA	116	.	NC_000913	1427992	0	G	T	bias_e_value=0.00432651	bias_p_value=9.32105e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.6	fisher_strand_p_value=3.72649e-11	frequency=4.423e-01	ks_quality_p_value=1	major_base=G	major_cov=32/26	major_frequency=5.577e-01	minor_base=T	minor_cov=0/46	new_cov=0/46	polymorphism_frequency=4.423e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=32/26	total_cov=32/72
RA	117	.	NC_000913	1466432	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.2	fisher_strand_p_value=1	frequency=2.424e-01	ks_quality_p_value=1	major_base=A	major_cov=21/29	major_frequency=7.576e-01	minor_base=G	minor_cov=7/9	new_cov=7/9	polymorphism_frequency=2.424e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=21/29	total_cov=28/38
RA	118	.	NC_000913	1466438	0	T	G	bias_e_value=4498320	bias_p_value=0.96912	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.2	fisher_strand_p_value=0.762007	frequency=2.121e-01	ks_quality_p_value=1	major_base=T	major_cov=23/29	major_frequency=7.879e-01	minor_base=G	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=2.121e-01	polymorphism_score=26.9	prediction=polymorphism	ref_cov=23/29	total_cov=28/38
RA	119	.	NC_000913	1502770	0	T	C	bias_e_value=607.603	bias_p_value=0.000130902	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.4	fisher_strand_p_value=1.05025e-05	frequency=2.535e-01	ks_quality_p_value=1	major_base=T	major_cov=30/23	major_frequency=7.465e-01	minor_base=C	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.535e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=30/23	total_cov=30/41
RA	120	.	NC_000913	1579973	0	C	A	bias_e_value=0.00195352	bias_p_value=4.20866e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.5	fisher_strand_p_value=1.6287e-11	frequency=3.258e-01	ks_quality_p_value=1	major_base=C	major_cov=41/48	major_frequency=6.742e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.258e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=41/48	total_cov=84/48
RA	121	.	NC_000913	1596495	0	G	T	bias_e_value=7.60115e-07	bias_p_value=1.6376e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=344.0	fisher_strand_p_value=4.82132e-15	frequency=2.416e-01	ks_quality_p_value=1	major_base=G	major_cov=78/35	major_frequency=7.584e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.416e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=78/35	total_cov=78/71
RA	122	.	NC_000913	1756353	0	C	A	bias_e_value=27.524	bias_p_value=5.9298e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.6	fisher_strand_p_value=3.75417e-07	frequency=2.941e-01	ks_quality_p_value=1	major_base=C	major_cov=38/34	major_frequency=7.059e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.941e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=38/34	total_cov=68/34
RA	123	.	NC_000913	1812509	0	G	T	bias_e_value=8.26397e-09	bias_p_value=1.78039e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.2	fisher_strand_p_value=4.61056e-17	frequency=3.609e-01	ks_quality_p_value=1	major_base=G	major_cov=58/27	major_frequency=6.391e-01	minor_base=T	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=3.609e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=58/27	total_cov=58/75
RA	124	.	NC_000913	1951203	0	A	T	bias_e_value=2503980	bias_p_value=0.53946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.9	fisher_strand_p_value=0.216914	frequency=2.869e-01	ks_quality_p_value=0.973226	major_base=A	major_cov=37/50	major_frequency=7.131e-01	minor_base=T	minor_cov=10/25	new_cov=10/25	polymorphism_frequency=2.869e-01	polymorphism_score=137.1	prediction=polymorphism	ref_cov=37/50	total_cov=47/77
RA	125	.	NC_000913	1951320	0	G	A	bias_e_value=1249550	bias_p_value=0.269203	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.5	fisher_strand_p_value=0.195345	frequency=3.917e-01	ks_quality_p_value=0.383805	major_base=G	major_cov=37/36	major_frequency=6.083e-01	minor_base=A	minor_cov=18/29	new_cov=18/29	polymorphism_frequency=3.917e-01	polymorphism_score=151.3	prediction=polymorphism	ref_cov=37/36	total_cov=55/65
RA	126	.	NC_000913	1951332	0	T	C	bias_e_value=1074280	bias_p_value=0.231444	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.8	fisher_strand_p_value=0.0612426	frequency=3.629e-01	ks_quality_p_value=0.995071	major_base=T	major_cov=45/34	major_frequency=6.371e-01	minor_base=C	minor_cov=17/28	new_cov=17/28	polymorphism_frequency=3.629e-01	polymorphism_score=133.8	prediction=polymorphism	ref_cov=45/34	total_cov=62/62
RA	127	.	NC_000913	1951335	0	C	T	bias_e_value=877158	bias_p_value=0.188975	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.7	fisher_strand_p_value=0.0612426	frequency=3.629e-01	ks_quality_p_value=0.758208	major_base=C	major_cov=45/34	major_frequency=6.371e-01	minor_base=T	minor_cov=17/28	new_cov=17/28	polymorphism_frequency=3.629e-01	polymorphism_score=144.1	prediction=polymorphism	ref_cov=45/34	total_cov=62/62
RA	128	.	NC_000913	1951338	0	C	T	bias_e_value=268909	bias_p_value=0.0579339	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.4	fisher_strand_p_value=0.016444	frequency=3.571e-01	ks_quality_p_value=0.63309	major_base=C	major_cov=49/32	major_frequency=6.429e-01	minor_base=T	minor_cov=17/28	new_cov=17/28	polymorphism_frequency=3.571e-01	polymorphism_score=145.7	prediction=polymorphism	ref_cov=49/32	total_cov=67/60
RA	129	.	NC_000913	1951386	0	C	T	bias_e_value=408314	bias_p_value=0.0879675	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.2	fisher_strand_p_value=0.0647192	frequency=3.571e-01	ks_quality_p_value=0.26914	major_base=C	major_cov=45/36	major_frequency=6.429e-01	minor_base=T	minor_cov=17/28	new_cov=17/28	polymorphism_frequency=3.571e-01	polymorphism_score=144.4	prediction=polymorphism	ref_cov=45/36	total_cov=66/64
RA	130	.	NC_000913	1951387	0	A	C	bias_e_value=803420	bias_p_value=0.173089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.2	fisher_strand_p_value=0.0422998	frequency=3.462e-01	ks_quality_p_value=0.97763	major_base=A	major_cov=49/36	major_frequency=6.538e-01	minor_base=C	minor_cov=17/28	new_cov=17/28	polymorphism_frequency=3.462e-01	polymorphism_score=137.7	prediction=polymorphism	ref_cov=49/36	total_cov=66/64
RA	131	.	NC_000913	1951412	0	A	G	bias_e_value=1273440	bias_p_value=0.274351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.2	fisher_strand_p_value=0.0984669	frequency=3.259e-01	ks_quality_p_value=0.781698	major_base=A	major_cov=50/41	major_frequency=6.741e-01	minor_base=G	minor_cov=17/27	new_cov=17/27	polymorphism_frequency=3.259e-01	polymorphism_score=128.8	prediction=polymorphism	ref_cov=50/41	total_cov=67/68
RA	132	.	NC_000913	1951448	0	G	T	bias_e_value=986796	bias_p_value=0.212596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=0.0808269	frequency=3.306e-01	ks_quality_p_value=0.672262	major_base=G	major_cov=49/32	major_frequency=6.694e-01	minor_base=T	minor_cov=17/23	new_cov=17/23	polymorphism_frequency=3.306e-01	polymorphism_score=111.0	prediction=polymorphism	ref_cov=49/32	total_cov=66/55
RA	133	.	NC_000913	2067300	0	C	T	bias_e_value=3327680	bias_p_value=0.716918	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.6	fisher_strand_p_value=0.433676	frequency=4.634e-01	ks_quality_p_value=0.805914	major_base=C	major_cov=49/39	major_frequency=5.366e-01	minor_base=T	minor_cov=37/39	new_cov=37/39	polymorphism_frequency=4.634e-01	polymorphism_score=252.3	prediction=polymorphism	ref_cov=49/39	total_cov=86/78
RA	134	.	NC_000913	2173363	0	C	.	bias_e_value=2321850	bias_p_value=0.50022	consensus_score=361.5	fisher_strand_p_value=0.186813	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=32/44	major_frequency=9.744e-01	minor_base=C	minor_cov=2/0	new_cov=32/44	polymorphism_frequency=9.744e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=2/0	total_cov=34/44
RA	135	.	NC_000913	2173364	0	C	.	bias_e_value=2107900	bias_p_value=0.454127	consensus_score=358.6	fisher_strand_p_value=0.186813	frequency=1	ks_quality_p_value=0.859141	major_base=.	major_cov=32/44	major_frequency=9.744e-01	minor_base=C	minor_cov=2/0	new_cov=32/44	polymorphism_frequency=9.744e-01	polymorphism_score=1.7	prediction=consensus	ref_cov=2/0	total_cov=34/44
RA	136	.	NC_000913	2288418	0	G	T	bias_e_value=0.000265315	bias_p_value=5.71596e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.3	fisher_strand_p_value=2.04768e-12	frequency=2.109e-01	ks_quality_p_value=1	major_base=G	major_cov=76/40	major_frequency=7.891e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.109e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=76/40	total_cov=76/71
RA	137	.	NC_000913	2457177	0	T	G	bias_e_value=3954.21	bias_p_value=0.000851897	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.0	fisher_strand_p_value=8.18274e-05	frequency=2.353e-01	ks_quality_p_value=1	major_base=T	major_cov=27/25	major_frequency=7.647e-01	minor_base=G	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.353e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=27/25	total_cov=27/44
RA	138	.	NC_000913	2477265	0	A	C	bias_e_value=0.0537621	bias_p_value=1.15825e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.5	fisher_strand_p_value=5.17493e-10	frequency=2.436e-01	ks_quality_p_value=1	major_base=A	major_cov=13/46	major_frequency=7.564e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.436e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=13/46	total_cov=32/46
RA	139	.	NC_000913	2647005	0	G	T	bias_e_value=604.454	bias_p_value=0.000130224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=1.04434e-05	frequency=2.949e-01	ks_quality_p_value=1	major_base=G	major_cov=27/28	major_frequency=7.051e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.949e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=27/28	total_cov=27/51
RA	140	.	NC_000913	2767444	0	C	A	bias_e_value=0.000411436	bias_p_value=8.86401e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.1	fisher_strand_p_value=3.22807e-12	frequency=2.558e-01	ks_quality_p_value=1	major_base=C	major_cov=12/52	major_frequency=7.442e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.558e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=12/52	total_cov=34/52
RA	141	.	NC_000913	2767445	0	C	A	bias_e_value=4.04086e-07	bias_p_value=8.70565e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.3	fisher_strand_p_value=2.51488e-15	frequency=3.023e-01	ks_quality_p_value=1	major_base=C	major_cov=8/52	major_frequency=6.977e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.023e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=8/52	total_cov=34/52
RA	142	.	NC_000913	2815937	0	G	T	bias_e_value=0.00522437	bias_p_value=1.12554e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.0	fisher_strand_p_value=4.53545e-11	frequency=2.769e-01	ks_quality_p_value=1	major_base=G	major_cov=54/40	major_frequency=7.231e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.769e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=54/40	total_cov=55/76
RA	143	.	NC_000913	2876715	0	G	T	bias_e_value=0.32629	bias_p_value=7.02962e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.3	fisher_strand_p_value=3.43067e-09	frequency=2.642e-01	ks_quality_p_value=1	major_base=G	major_cov=46/32	major_frequency=7.358e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.642e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=46/32	total_cov=46/60
RA	144	.	NC_000913	2990480	0	C	A	bias_e_value=0.886788	bias_p_value=1.9105e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.8	fisher_strand_p_value=9.82872e-09	frequency=2.766e-01	ks_quality_p_value=1	major_base=C	major_cov=56/46	major_frequency=7.234e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.766e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=56/46	total_cov=95/46
RA	145	.	NC_000913	3032307	0	C	T	bias_e_value=9.23884e-08	bias_p_value=1.99042e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.1	fisher_strand_p_value=5.50828e-16	frequency=2.619e-01	ks_quality_p_value=1	major_base=C	major_cov=22/71	major_frequency=7.381e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.619e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=22/71	total_cov=55/71
RA	146	.	NC_000913	3054886	0	G	T	bias_e_value=0.0105666	bias_p_value=2.27647e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.0	fisher_strand_p_value=9.45295e-11	frequency=2.617e-01	ks_quality_p_value=1	major_base=G	major_cov=27/52	major_frequency=7.383e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.617e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=27/52	total_cov=55/52
RA	147	.	NC_000913	3054894	0	G	T	bias_e_value=203.321	bias_p_value=4.38036e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.2	fisher_strand_p_value=3.20917e-06	frequency=2.688e-01	ks_quality_p_value=1	major_base=G	major_cov=20/48	major_frequency=7.312e-01	minor_base=T	minor_cov=21/4	new_cov=21/4	polymorphism_frequency=2.688e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=20/48	total_cov=42/52
RA	148	.	NC_000913	3388766	0	G	T	bias_e_value=5.76154	bias_p_value=1.24127e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.1	fisher_strand_p_value=7.10953e-08	frequency=2.973e-01	ks_quality_p_value=1	major_base=G	major_cov=33/19	major_frequency=7.027e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.973e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=33/19	total_cov=33/41
RA	149	.	NC_000913	3560455	1	.	G	consensus_score=335.3	frequency=1	major_base=G	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	150	.	NC_000913	3741871	0	G	T	bias_e_value=1.06261	bias_p_value=2.2893e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.1	fisher_strand_p_value=1.18942e-08	frequency=2.788e-01	ks_quality_p_value=1	major_base=G	major_cov=42/33	major_frequency=7.212e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.788e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=42/33	total_cov=42/62
RA	151	.	NC_000913	3843750	0	C	A	bias_e_value=0.463507	bias_p_value=9.98581e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.6	fisher_strand_p_value=4.96281e-09	frequency=3.106e-01	ks_quality_p_value=1	major_base=C	major_cov=68/43	major_frequency=6.894e-01	minor_base=A	minor_cov=50/0	new_cov=50/0	polymorphism_frequency=3.106e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=68/43	total_cov=118/43
RA	152	.	NC_000913	3911533	0	C	A	bias_e_value=4.02509e-09	bias_p_value=8.67167e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.8	fisher_strand_p_value=2.20351e-17	frequency=3.534e-01	ks_quality_p_value=1	major_base=C	major_cov=26/60	major_frequency=6.466e-01	minor_base=A	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=3.534e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=26/60	total_cov=73/60
RA	153	.	NC_000913	4213310	0	G	T	bias_e_value=3.19587e-05	bias_p_value=6.8852e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.1	fisher_strand_p_value=2.28696e-13	frequency=2.397e-01	ks_quality_p_value=1	major_base=G	major_cov=67/25	major_frequency=7.603e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.397e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=67/25	total_cov=67/54
RA	154	.	NC_000913	4241875	0	G	T	bias_e_value=2.89081	bias_p_value=6.22797e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.4	fisher_strand_p_value=3.42386e-08	frequency=2.688e-01	ks_quality_p_value=1	major_base=G	major_cov=40/28	major_frequency=7.312e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=40/28	total_cov=40/53
RA	155	.	NC_000913	4261040	0	C	A	bias_e_value=3.73296e-08	bias_p_value=8.04232e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=443.5	fisher_strand_p_value=2.16968e-16	frequency=2.188e-01	ks_quality_p_value=1	major_base=C	major_cov=52/98	major_frequency=7.812e-01	minor_base=A	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=2.188e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=52/98	total_cov=94/98
RA	156	.	NC_000913	4296268	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.2	fisher_strand_p_value=1	frequency=3.902e-01	ks_quality_p_value=1	major_base=T	major_cov=15/10	major_frequency=6.098e-01	minor_base=C	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=3.902e-01	polymorphism_score=41.8	prediction=polymorphism	ref_cov=15/10	total_cov=26/16
RA	157	.	NC_000913	4296286	0	C	T	bias_e_value=1835210	bias_p_value=0.395379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.2	fisher_strand_p_value=0.206233	frequency=2.424e-01	ks_quality_p_value=0.63071	major_base=C	major_cov=14/11	major_frequency=7.576e-01	minor_base=T	minor_cov=7/1	new_cov=7/1	polymorphism_frequency=2.424e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=14/11	total_cov=21/12
RA	158	.	NC_000913	4296304	0	A	C	bias_e_value=626475	bias_p_value=0.134968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.0	fisher_strand_p_value=0.0318971	frequency=2.222e-01	ks_quality_p_value=0.938482	major_base=A	major_cov=15/13	major_frequency=7.778e-01	minor_base=C	minor_cov=8/0	new_cov=8/0	polymorphism_frequency=2.222e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=15/13	total_cov=23/14
RA	159	.	NC_000913	4296380	1	.	C	bias_e_value=4077370	bias_p_value=0.878431	consensus_score=198.6	fisher_strand_p_value=0.549365	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=38/21	major_frequency=9.516e-01	minor_base=T	minor_cov=1/2	new_cov=38/21	polymorphism_frequency=9.516e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=0/1	total_cov=39/24
RA	160	.	NC_000913	4296380	2	.	G	bias_e_value=3418810	bias_p_value=0.736549	consensus_score=212.7	fisher_strand_p_value=0.380952	frequency=1	ks_quality_p_value=0.967761	major_base=G	major_cov=39/23	major_frequency=9.841e-01	minor_base=.	minor_cov=0/1	new_cov=39/23	polymorphism_frequency=9.841e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=39/24
RA	161	.	NC_000913	4360965	0	C	A	bias_e_value=1.4266e-05	bias_p_value=3.07348e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.4	fisher_strand_p_value=9.93359e-14	frequency=2.636e-01	ks_quality_p_value=1	major_base=C	major_cov=30/65	major_frequency=7.364e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.636e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=30/65	total_cov=64/65
RA	162	.	NC_000913	4406302	0	C	A	bias_e_value=0.00313947	bias_p_value=6.76369e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.1	fisher_strand_p_value=2.66844e-11	frequency=2.743e-01	ks_quality_p_value=1	major_base=C	major_cov=29/53	major_frequency=7.257e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.743e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=29/53	total_cov=60/53
MC	163	.	NC_000913	257908	258683	767	0	left_inside_cov=1	left_outside_cov=121	right_inside_cov=1	right_outside_cov=121
MC	164	.	NC_000913	354596	354669	0	0	left_inside_cov=0	left_outside_cov=105	right_inside_cov=30	right_outside_cov=31
MC	165	.	NC_000913	361657	362203	0	0	left_inside_cov=0	left_outside_cov=113	right_inside_cov=0	right_outside_cov=114
MC	166	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=145	right_inside_cov=0	right_outside_cov=146
MC	167	.	NC_000913	1805110	1805246	0	0	left_inside_cov=30	left_outside_cov=31	right_inside_cov=30	right_outside_cov=36
MC	168	.	NC_000913	1978503	1979278	767	0	left_inside_cov=0	left_outside_cov=139	right_inside_cov=6	right_outside_cov=141
MC	169	.	NC_000913	3423884	3424432	348	193	left_inside_cov=30	left_outside_cov=31	right_inside_cov=30	right_outside_cov=31
MC	170	.	NC_000913	3883307	3883561	0	0	left_inside_cov=30	left_outside_cov=31	right_inside_cov=30	right_outside_cov=31
JC	171	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=69	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=292	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=248	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=148	max_min_right_minus=148	max_min_right_plus=134	max_pos_hash_score=584	max_right=299	max_right_minus=275	max_right_plus=299	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.40	new_junction_read_count=132	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=131
JC	172	.	NC_000913	17369	-1	NC_000913	17696	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.555e-02	junction_possible_overlap_registers=281	key=NC_000913__17369__-1__NC_000913__17685__1__11____300__300__0__0	max_left=69	max_left_minus=69	max_left_plus=69	max_min_left=69	max_min_left_minus=69	max_min_left_plus=69	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=562	max_right=125	max_right_minus=125	max_right_plus=125	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.555e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.40	side_1_overlap=11	side_1_possible_overlap_registers=292	side_1_read_count=132	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	173	.	NC_000913	19796	1	NC_000913	361656	-1	0	alignment_overlap=1	coverage_minus=51	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__19796__1__NC_000913__361657__-1__1____300__300__1__0	max_left=290	max_left_minus=290	max_left_plus=284	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=148	max_min_right_minus=139	max_min_right_plus=148	max_pos_hash_score=582	max_right=297	max_right_minus=297	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	174	.	NC_000913	70062	1	NC_000913	367520	-1	-22	alignment_overlap=-22	coverage_minus=36	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=5.005e-01	junction_possible_overlap_registers=270	key=NC_000913__70062__1__NC_000913__367520__-1__-22__GCTAGCAGGAGGAATTCACCAT__300__300__0__0	max_left=274	max_left_minus=274	max_left_plus=269	max_min_left=132	max_min_left_minus=132	max_min_left_plus=118	max_min_right=127	max_min_right_minus=127	max_min_right_plus=100	max_pos_hash_score=540	max_right=247	max_right_minus=247	max_right_plus=232	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.94	new_junction_read_count=82	polymorphism_frequency=5.005e-01	pos_hash_score=50	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=80	unique_read_sequence=GCTAGCAGGAGGAATTCACCAT
JC	175	.	NC_000913	71265	-1	NC_000913	354595	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=6.581e-01	junction_possible_overlap_registers=292	key=NC_000913__71265__-1__NC_000913__354595__-1__0____300__300__0__0	max_left=297	max_left_minus=284	max_left_plus=297	max_min_left=147	max_min_left_minus=147	max_min_left_plus=143	max_min_right=144	max_min_right_minus=144	max_min_right_plus=139	max_pos_hash_score=584	max_right=282	max_right_minus=277	max_right_plus=282	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.09	new_junction_read_count=103	polymorphism_frequency=6.581e-01	pos_hash_score=59	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	176	.	NC_000913	92856	-1	NC_000913	93272	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.199e-02	junction_possible_overlap_registers=288	key=NC_000913__92856__-1__NC_000913__93268__1__4____300__300__0__0	max_left=49	max_left_minus=49	max_left_plus=49	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=576	max_right=155	max_right_minus=154	max_right_plus=155	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.199e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=4	side_1_possible_overlap_registers=292	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	177	.	NC_000913	215228	-1	NC_000913	215618	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.553e-02	junction_possible_overlap_registers=280	key=NC_000913__215228__-1__NC_000913__215606__1__12____300__300__0__0	max_left=201	max_left_minus=201	max_left_plus=146	max_min_left=38	max_min_left_minus=0	max_min_left_plus=38	max_min_right=140	max_min_right_minus=87	max_min_right_plus=140	max_pos_hash_score=560	max_right=249	max_right_minus=87	max_right_plus=249	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.553e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=12	side_1_possible_overlap_registers=292	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=3
JC	178	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=48	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=282	max_min_left=143	max_min_left_minus=107	max_min_left_plus=143	max_min_right=145	max_min_right_minus=140	max_min_right_plus=145	max_pos_hash_score=568	max_right=283	max_right_minus=283	max_right_plus=273	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.31	new_junction_read_count=120	polymorphism_frequency=9.960e-01	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=292	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=114
JC	179	.	NC_000913	258675	-1	NC_000913	362204	1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__258675__-1__NC_000913__362204__1__0____300__300__1__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=146	max_min_right=148	max_min_right_minus=148	max_min_right_plus=137	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=294	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	180	.	NC_000913	274216	-1	NC_000913	274283	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.237e-01	junction_possible_overlap_registers=282	key=NC_000913__274216__-1__NC_000913__274273__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.237e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.23	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	181	.	NC_000913	574852	-1	NC_000913	574919	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.289e-01	junction_possible_overlap_registers=282	key=NC_000913__574852__-1__NC_000913__574909__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.289e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.22	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	182	.	NC_000913	688112	-1	NC_000913	688179	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.929e-01	junction_possible_overlap_registers=282	key=NC_000913__688112__-1__NC_000913__688169__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.929e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=13	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	183	.	NC_000913	696454	-1	NC_000913	696890	1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.272e-01	junction_possible_overlap_registers=281	key=NC_000913__696454__-1__NC_000913__696879__1__11____300__300__0__0	max_left=146	max_left_minus=146	max_left_plus=133	max_min_left=14	max_min_left_minus=8	max_min_left_plus=14	max_min_right=128	max_min_right_minus=128	max_min_right_plus=128	max_pos_hash_score=562	max_right=128	max_right_minus=128	max_right_plus=128	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.272e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=11	side_1_possible_overlap_registers=292	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=10
JC	184	.	NC_000913	696506	-1	NC_000913	697057	1	-45	alignment_overlap=-45	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.336e-02	junction_possible_overlap_registers=247	key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0	max_left=72	max_left_minus=72	max_left_plus=28	max_min_left=72	max_min_left_minus=72	max_min_left_plus=28	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=494	max_right=201	max_right_minus=201	max_right_plus=124	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=8.336e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT
JC	185	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.200e-01	junction_possible_overlap_registers=280	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=239	max_left_minus=152	max_left_plus=239	max_min_left=98	max_min_left_minus=98	max_min_left_plus=41	max_min_right=136	max_min_right_minus=136	max_min_right_plus=49	max_pos_hash_score=560	max_right=247	max_right_minus=190	max_right_plus=247	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.200e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=12	side_1_possible_overlap_registers=292	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=4
JC	186	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.218e-01	junction_possible_overlap_registers=280	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=239	max_left_minus=152	max_left_plus=239	max_min_left=98	max_min_left_minus=98	max_min_left_plus=41	max_min_right=136	max_min_right_minus=136	max_min_right_plus=49	max_pos_hash_score=560	max_right=247	max_right_minus=190	max_right_plus=247	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.218e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=12	side_1_possible_overlap_registers=292	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=4
JC	187	.	NC_000913	780629	-1	NC_000913	781017	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.365e-02	junction_possible_overlap_registers=274	key=NC_000913__780629__-1__NC_000913__780999__1__18____300__300__0__0	max_left=233	max_left_minus=233	max_left_plus=90	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=548	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.365e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=18	side_1_possible_overlap_registers=292	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	188	.	NC_000913	780918	-1	NC_000913	781321	1	0	alignment_overlap=18	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.808e-02	junction_possible_overlap_registers=274	key=NC_000913__780918__-1__NC_000913__781303__1__18____300__300__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=110	max_pos_hash_score=548	max_right=110	max_right_minus=110	max_right_plus=110	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.808e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=18	side_1_possible_overlap_registers=292	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=6
JC	189	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=7	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.453e-01	junction_possible_overlap_registers=290	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=197	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=47	max_pos_hash_score=580	max_right=76	max_right_minus=76	max_right_plus=47	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.14	new_junction_read_count=13	polymorphism_frequency=1.453e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=12	unique_read_sequence=GG
JC	190	.	NC_000913	781369	1	NC_000913	2521127	-1	-1	alignment_overlap=-1	coverage_minus=7	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.610e-01	junction_possible_overlap_registers=291	key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=197	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=48	max_pos_hash_score=582	max_right=77	max_right_minus=77	max_right_plus=48	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.14	new_junction_read_count=13	polymorphism_frequency=1.610e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=12	unique_read_sequence=G
JC	191	.	NC_000913	781577	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.973e-02	junction_possible_overlap_registers=288	key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=157	max_left_minus=157	max_left_plus=48	max_min_left=62	max_min_left_minus=62	max_min_left_plus=48	max_min_right=110	max_min_right_minus=110	max_min_right_plus=0	max_pos_hash_score=576	max_right=261	max_right_minus=110	max_right_plus=261	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.973e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GAAG
JC	192	.	NC_000913	1134476	-1	NC_000913	1134847	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.927e-02	junction_possible_overlap_registers=282	key=NC_000913__1134476__-1__NC_000913__1134837__1__10____300__300__0__0	max_left=80	max_left_minus=80	max_left_plus=80	max_min_left=80	max_min_left_minus=80	max_min_left_plus=80	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=564	max_right=135	max_right_minus=135	max_right_plus=135	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.927e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=4
JC	193	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=39	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=6.691e-01	junction_possible_overlap_registers=276	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=237	max_min_left=139	max_min_left_minus=127	max_min_left_plus=139	max_min_right=140	max_min_right_minus=135	max_min_right_plus=140	max_pos_hash_score=552	max_right=279	max_right_minus=263	max_right_plus=279	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=68	polymorphism_frequency=6.691e-01	pos_hash_score=47	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=16	side_1_possible_overlap_registers=292	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=67
JC	194	.	NC_000913	1207800	1	NC_000913	1209610	1	-1	alignment_overlap=-1	coverage_minus=8	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=1.725e-01	junction_possible_overlap_registers=291	key=NC_000913__1207800__1__NC_000913__1209610__1__-1__A__300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=0	max_min_left=125	max_min_left_minus=125	max_min_left_plus=0	max_min_right=143	max_min_right_minus=143	max_min_right_plus=0	max_pos_hash_score=582	max_right=263	max_right_minus=263	max_right_plus=0	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=1.725e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.35	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.47	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=A
JC	195	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=26	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=5.974e-01	junction_possible_overlap_registers=276	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=271	max_left_minus=231	max_left_plus=271	max_min_left=130	max_min_left_minus=130	max_min_left_plus=125	max_min_right=142	max_min_right_minus=142	max_min_right_plus=123	max_pos_hash_score=552	max_right=281	max_right_minus=264	max_right_plus=281	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.58	new_junction_read_count=52	polymorphism_frequency=5.974e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.37	side_1_overlap=16	side_1_possible_overlap_registers=292	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=51
JC	196	.	NC_000913	1286892	-1	NC_000913	1287544	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.270e-02	junction_possible_overlap_registers=291	key=NC_000913__1286892__-1__NC_000913__1287544__1__-1__C__300__300__0__0	max_left=264	max_left_minus=264	max_left_plus=237	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=57	max_min_right_plus=57	max_pos_hash_score=582	max_right=57	max_right_minus=57	max_right_plus=57	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.270e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=C
JC	197	.	NC_000913	1287070	-1	NC_000913	1287544	1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.331e-02	junction_possible_overlap_registers=291	key=NC_000913__1287070__-1__NC_000913__1287544__1__-1__C__300__300__0__0	max_left=157	max_left_minus=157	max_left_plus=138	max_min_left=138	max_min_left_minus=71	max_min_left_plus=138	max_min_right=141	max_min_right_minus=141	max_min_right_plus=0	max_pos_hash_score=582	max_right=228	max_right_minus=228	max_right_plus=158	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.331e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=C
JC	198	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=75	coverage_plus=67	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=288	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=294	max_min_left=146	max_min_left_minus=136	max_min_left_plus=146	max_min_right=139	max_min_right_minus=139	max_min_right_plus=139	max_pos_hash_score=576	max_right=295	max_right_minus=287	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.56	new_junction_read_count=145	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=292	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=142
JC	199	.	NC_000913	1300365	-1	NC_000913	1300432	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=282	key=NC_000913__1300375__-1__NC_000913__1300432__1__10____300__300__1__0	max_left=260	max_left_minus=260	max_left_plus=0	max_min_left=94	max_min_left_minus=94	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=564	max_right=211	max_right_minus=211	max_right_plus=0	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=10	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	200	.	NC_000913	1396910	-1	NC_000913	1396977	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=1.929e-01	junction_possible_overlap_registers=282	key=NC_000913__1396920__-1__NC_000913__1396977__1__10____300__300__1__0	max_left=260	max_left_minus=260	max_left_plus=0	max_min_left=94	max_min_left_minus=94	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=564	max_right=211	max_right_minus=211	max_right_plus=0	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.929e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.14	side_2_overlap=10	side_2_possible_overlap_registers=292	side_2_read_count=13	side_2_redundant=0	total_non_overlap_reads=3
JC	201	.	NC_000913	1397238	-1	NC_000913	1995623	-1	0	alignment_overlap=0	coverage_minus=70	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1397238__-1__NC_000913__1995623__-1__0____300__300__1__0	max_left=294	max_left_minus=293	max_left_plus=294	max_min_left=139	max_min_left_minus=139	max_min_left_plus=129	max_min_right=137	max_min_right_minus=137	max_min_right_plus=133	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.39	new_junction_read_count=131	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=128
JC	202	.	NC_000913	1945474	-1	NC_000913	1945724	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.883e-02	junction_possible_overlap_registers=283	key=NC_000913__1945474__-1__NC_000913__1945715__1__9____300__300__0__0	max_left=257	max_left_minus=257	max_left_plus=241	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=66	max_min_right_plus=129	max_pos_hash_score=566	max_right=129	max_right_minus=66	max_right_plus=129	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.883e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=9	side_1_possible_overlap_registers=292	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=4
JC	203	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=64	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=286	max_min_left=144	max_min_left_minus=132	max_min_left_plus=144	max_min_right=135	max_min_right_minus=135	max_min_right_plus=121	max_pos_hash_score=568	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.47	new_junction_read_count=135	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=292	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=128
JC	204	.	NC_000913	1995620	1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1995620__1__NC_000913__2290113__-1__0____300__300__0__1	max_left=296	max_left_minus=286	max_left_plus=296	max_min_left=143	max_min_left_minus=143	max_min_left_plus=139	max_min_right=146	max_min_right_minus=146	max_min_right_plus=146	max_pos_hash_score=584	max_right=287	max_right_minus=238	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=119
JC	205	.	NC_000913	2066420	-1	NC_000913	2102077	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.072e-02	junction_possible_overlap_registers=282	key=NC_000913__2066420__-1__NC_000913__2102067__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.072e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	206	.	NC_000913	2102010	-1	NC_000913	2102077	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=2.566e-01	junction_possible_overlap_registers=282	key=NC_000913__2102010__-1__NC_000913__2102067__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.566e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.10	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=9	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	207	.	NC_000913	2289180	-1	NC_000913	2289247	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=2.370e-01	junction_possible_overlap_registers=282	key=NC_000913__2289180__-1__NC_000913__2289237__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.370e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	208	.	NC_000913	2347239	-1	NC_000913	2347328	1	0	alignment_overlap=39	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.448e-02	junction_possible_overlap_registers=253	key=NC_000913__2347239__-1__NC_000913__2347289__1__39____300__300__0__0	max_left=183	max_left_minus=183	max_left_plus=123	max_min_left=123	max_min_left_minus=0	max_min_left_plus=123	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=506	max_right=147	max_right_minus=78	max_right_plus=147	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.448e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=39	side_1_possible_overlap_registers=292	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=253	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4
JC	209	.	NC_000913	2653389	-1	NC_000913	2653716	1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.826e-02	junction_possible_overlap_registers=287	key=NC_000913__2653389__-1__NC_000913__2653711__1__5____300__300__0__0	max_left=119	max_left_minus=119	max_left_plus=95	max_min_left=111	max_min_left_minus=111	max_min_left_plus=95	max_min_right=49	max_min_right_minus=49	max_min_right_plus=0	max_pos_hash_score=574	max_right=220	max_right_minus=184	max_right_plus=220	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.826e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=5	side_1_possible_overlap_registers=292	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=5
JC	210	.	NC_000913	3131012	-1	NC_000913	3131079	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=1.929e-01	junction_possible_overlap_registers=282	key=NC_000913__3131022__-1__NC_000913__3131079__1__10____300__300__1__0	max_left=260	max_left_minus=260	max_left_plus=0	max_min_left=94	max_min_left_minus=94	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=564	max_right=211	max_right_minus=211	max_right_plus=0	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.929e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.14	side_2_overlap=10	side_2_possible_overlap_registers=292	side_2_read_count=13	side_2_redundant=0	total_non_overlap_reads=3
JC	211	.	NC_000913	3270072	1	NC_000913	4137788	1	-25	alignment_overlap=-25	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.591e-02	junction_possible_overlap_registers=267	key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0	max_left=262	max_left_minus=262	max_left_plus=193	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=61	max_pos_hash_score=534	max_right=61	max_right_minus=61	max_right_plus=61	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.591e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA
JC	212	.	NC_000913	3365817	-1	NC_000913	3365884	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=2.202e-01	junction_possible_overlap_registers=282	key=NC_000913__3365817__-1__NC_000913__3365874__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.202e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	213	.	NC_000913	3621836	-1	NC_000913	3622017	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.389e-01	junction_possible_overlap_registers=280	key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0	max_left=152	max_left_minus=152	max_left_plus=41	max_min_left=98	max_min_left_minus=98	max_min_left_plus=41	max_min_right=136	max_min_right_minus=136	max_min_right_plus=0	max_pos_hash_score=560	max_right=247	max_right_minus=190	max_right_plus=247	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.389e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=12	side_2_possible_overlap_registers=292	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=3
JC	214	.	NC_000913	3652297	-1	NC_000913	3652364	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.087e-01	junction_possible_overlap_registers=282	key=NC_000913__3652297__-1__NC_000913__3652354__1__10____300__300__0__1	max_left=211	max_left_minus=0	max_left_plus=211	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.087e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=10	side_1_possible_overlap_registers=292	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	215	.	NC_000913	3764827	-1	NC_000913	3765008	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.105e-01	junction_possible_overlap_registers=280	key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0	max_left=152	max_left_minus=152	max_left_plus=41	max_min_left=98	max_min_left_minus=98	max_min_left_plus=41	max_min_right=136	max_min_right_minus=136	max_min_right_plus=0	max_pos_hash_score=560	max_right=247	max_right_minus=190	max_right_plus=247	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.105e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=12	side_2_possible_overlap_registers=292	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=3
JC	216	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=7.156e-02	junction_possible_overlap_registers=283	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=259	max_min_left=104	max_min_left_minus=104	max_min_left_plus=81	max_min_right=114	max_min_right_minus=114	max_min_right_plus=89	max_pos_hash_score=566	max_right=258	max_right_minus=187	max_right_plus=258	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=7.156e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.56	side_1_overlap=9	side_1_possible_overlap_registers=292	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=10
JC	217	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.283e-02	junction_possible_overlap_registers=283	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=163	max_left_minus=144	max_left_plus=163	max_min_left=144	max_min_left_minus=144	max_min_left_plus=122	max_min_right=128	max_min_right_minus=0	max_min_right_plus=128	max_pos_hash_score=566	max_right=287	max_right_minus=287	max_right_plus=164	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=4.283e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.65	side_1_overlap=9	side_1_possible_overlap_registers=292	side_1_read_count=156	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=6
UN	218	.	NC_000913	15663	16464
UN	219	.	NC_000913	20079	20276
UN	220	.	NC_000913	70289	70289
UN	221	.	NC_000913	70371	70371
UN	222	.	NC_000913	71082	71082
UN	223	.	NC_000913	71085	71085
UN	224	.	NC_000913	71175	71175
UN	225	.	NC_000913	224026	224499
UN	226	.	NC_000913	225164	225325
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