mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 1,342,265 | T→G | V115V (GTT→GTG) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,399,444 | 2 bp→TC | coding (82‑83/753 nt) | fnr ← | DNA‑binding transcriptional dual regulator FNR |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,609,416 | G→A | R310R (CGG→CGA) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,936,855 | T→G | A424A (GCT→GCG) | fucI → | L‑fucose isomerase |
| RA | 2,937,210 | C→T | L543F (CTC→TTC) | fucI → | L‑fucose isomerase |
| RA | 2,938,548 | A→T | T361S (ACG→TCG) | fucK → | L‑fuculokinase |
| RA | 2,949,133 | C→A | intergenic (‑123/‑109) | amiC ← / → argA | N‑acetylmuramoyl‑L‑alanine amidase C/N‑acetylglutamate synthase |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423812–3424232 | 3424503–3424239 | 8–692 | 27 [25] | [26] 27 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 273955 = | NA (NA) | 30 (0.370) | 21/590 | 2.6 | 27.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 677814 | 79 (0.990) | coding (400/1428 nt) | djlB | J domain‑containing protein DjlB | |||||
| * | ? | NC_000913 | 1207790 = | 15 (0.190) | 80 (1.060) | 49/558 | 0.3 | 76.5% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 35 (0.460) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 16 (0.200) | 59 (0.780) | 40/558 | 0.6 | 70.2% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 35 (0.460) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 114 (1.440) | 66/582 | 0.1 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||