#=GENOME_DIFF	1.0
#=CREATED	19:31:42 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9018_S29_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9018_S29_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9018_S29_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9018_S29_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9018_S29_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	383046164
#=CONVERTED-READS	1293889
#=INPUT-BASES	383131956
#=INPUT-READS	1294182
#=MAPPED-BASES	371657500
#=MAPPED-READS	1256223
DEL	1	61,65	NC_000913	257908	776
SNP	2	25	NC_000913	1342265	G
SUB	3	26,27	NC_000913	1399444	2	TC
DEL	4	62,87	NC_000913	1978503	776
DEL	5	33,34	NC_000913	2173363	2
SNP	6	37	NC_000913	2609416	A
SNP	7	41	NC_000913	2926772	A
SNP	8	42	NC_000913	2936855	G
SNP	9	43	NC_000913	2937210	T
SNP	10	44	NC_000913	2938548	T
SNP	11	45	NC_000913	2949133	A
INS	12	51	NC_000913	3560455	G
INS	13	57,58	NC_000913	4296381	GC
RA	14	.	NC_000913	36	0	C	A	bias_e_value=1593.76	bias_p_value=0.000343361	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.6	fisher_strand_p_value=3.00895e-05	frequency=2.436e-01	ks_quality_p_value=1	major_base=C	major_cov=42/17	major_frequency=7.564e-01	minor_base=A	minor_cov=3/16	new_cov=3/16	polymorphism_frequency=2.436e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=42/17	total_cov=45/33
RA	15	.	NC_000913	58065	0	C	A	bias_e_value=27.7058	bias_p_value=5.96894e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.2	fisher_strand_p_value=3.78063e-07	frequency=3.151e-01	ks_quality_p_value=1	major_base=C	major_cov=21/29	major_frequency=6.849e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.151e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=21/29	total_cov=44/29
RA	16	.	NC_000913	180048	0	C	A	bias_e_value=8.32298	bias_p_value=1.79311e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.6	fisher_strand_p_value=1.05052e-07	frequency=2.929e-01	ks_quality_p_value=1	major_base=C	major_cov=34/36	major_frequency=7.071e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.929e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=34/36	total_cov=63/36
RA	17	.	NC_000913	320845	0	C	A	bias_e_value=613.881	bias_p_value=0.000132255	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.8	fisher_strand_p_value=1.06206e-05	frequency=3.117e-01	ks_quality_p_value=1	major_base=C	major_cov=28/25	major_frequency=6.883e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.117e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=28/25	total_cov=52/25
RA	18	.	NC_000913	571007	0	C	A	bias_e_value=8.1991e-08	bias_p_value=1.76642e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=373.8	fisher_strand_p_value=4.87182e-16	frequency=2.418e-01	ks_quality_p_value=1	major_base=C	major_cov=34/82	major_frequency=7.582e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.418e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=34/82	total_cov=71/83
RA	19	.	NC_000913	834674	0	C	A	bias_e_value=10.8466	bias_p_value=2.33681e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.1	fisher_strand_p_value=1.39201e-07	frequency=2.763e-01	ks_quality_p_value=1	major_base=C	major_cov=20/35	major_frequency=7.237e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.763e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=20/35	total_cov=41/35
RA	20	.	NC_000913	847955	0	G	A	bias_e_value=0.00037047	bias_p_value=7.98142e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.4	fisher_strand_p_value=2.89518e-12	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=61/37	major_frequency=7.368e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.632e-01	polymorphism_score=36.5	prediction=polymorphism	ref_cov=61/37	total_cov=61/72
RA	21	.	NC_000913	848028	0	G	T	bias_e_value=0.16875	bias_p_value=3.63556e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.8	fisher_strand_p_value=1.71625e-09	frequency=2.348e-01	ks_quality_p_value=1	major_base=G	major_cov=56/45	major_frequency=7.652e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.348e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=56/45	total_cov=56/76
RA	22	.	NC_000913	1087580	0	G	A	bias_e_value=2.32589	bias_p_value=5.01092e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.0	fisher_strand_p_value=2.72038e-08	frequency=2.342e-01	ks_quality_p_value=1	major_base=G	major_cov=37/48	major_frequency=7.658e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.342e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=37/48	total_cov=63/48
RA	23	.	NC_000913	1097118	0	C	A	bias_e_value=4323570	bias_p_value=0.931472	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.3	fisher_strand_p_value=0.653417	frequency=4.500e-01	ks_quality_p_value=1	major_base=C	major_cov=4/7	major_frequency=5.500e-01	minor_base=A	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=4.500e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=4/7	total_cov=9/11
RA	24	.	NC_000913	1334966	0	A	C	bias_e_value=0.0239666	bias_p_value=5.16338e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.9	fisher_strand_p_value=2.22301e-10	frequency=2.590e-01	ks_quality_p_value=1	major_base=A	major_cov=47/56	major_frequency=7.410e-01	minor_base=C	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.590e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=47/56	total_cov=83/56
RA	25	.	NC_000913	1342265	0	T	G	bias_e_value=4641600	bias_p_value=0.99999	consensus_score=147.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995465	major_base=G	major_cov=20/20	major_frequency=9.091e-01	minor_base=T	minor_cov=2/2	new_cov=20/20	polymorphism_frequency=9.091e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=2/2	total_cov=22/23
RA	26	.	NC_000913	1399444	0	A	T	bias_e_value=4641560	bias_p_value=0.99998	consensus_score=360.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993745	major_base=T	major_cov=60/40	major_frequency=9.804e-01	minor_base=A	minor_cov=1/1	new_cov=60/40	polymorphism_frequency=9.804e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/1	total_cov=61/41
RA	27	.	NC_000913	1399445	0	G	C	bias_e_value=4639070	bias_p_value=0.999443	consensus_score=373.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966823	major_base=C	major_cov=60/37	major_frequency=9.798e-01	minor_base=G	minor_cov=1/1	new_cov=60/37	polymorphism_frequency=9.798e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=61/38
RA	28	.	NC_000913	1466432	0	A	G	bias_e_value=3149500	bias_p_value=0.678531	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.2	fisher_strand_p_value=0.314695	frequency=2.151e-01	ks_quality_p_value=1	major_base=A	major_cov=30/43	major_frequency=7.849e-01	minor_base=G	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=2.151e-01	polymorphism_score=27.1	prediction=polymorphism	ref_cov=30/43	total_cov=41/52
RA	29	.	NC_000913	1466438	0	T	G	bias_e_value=4552620	bias_p_value=0.980818	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.0	fisher_strand_p_value=0.810637	frequency=2.391e-01	ks_quality_p_value=1	major_base=T	major_cov=31/39	major_frequency=7.609e-01	minor_base=G	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=2.391e-01	polymorphism_score=36.9	prediction=polymorphism	ref_cov=31/39	total_cov=41/52
RA	30	.	NC_000913	1631903	0	G	T	bias_e_value=241.826	bias_p_value=5.20991e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.9	fisher_strand_p_value=3.87001e-06	frequency=3.231e-01	ks_quality_p_value=1	major_base=G	major_cov=25/19	major_frequency=6.769e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.231e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=25/19	total_cov=25/40
RA	31	.	NC_000913	1756353	0	C	A	bias_e_value=0.0473363	bias_p_value=1.01982e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.4	fisher_strand_p_value=4.52944e-10	frequency=3.556e-01	ks_quality_p_value=1	major_base=C	major_cov=22/36	major_frequency=6.444e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.556e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=22/36	total_cov=54/36
RA	32	.	NC_000913	1995370	0	C	A	bias_e_value=0.306694	bias_p_value=6.60743e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.5	fisher_strand_p_value=3.21442e-09	frequency=2.788e-01	ks_quality_p_value=1	major_base=C	major_cov=31/44	major_frequency=7.212e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.788e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=31/44	total_cov=60/44
RA	33	.	NC_000913	2173363	0	C	.	bias_e_value=3956410	bias_p_value=0.852372	consensus_score=343.8	fisher_strand_p_value=0.508468	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=42/31	major_frequency=9.733e-01	minor_base=C	minor_cov=2/0	new_cov=42/31	polymorphism_frequency=9.733e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=2/0	total_cov=44/31
RA	34	.	NC_000913	2173364	0	C	.	bias_e_value=3914180	bias_p_value=0.843272	consensus_score=344.1	fisher_strand_p_value=0.508468	frequency=1	ks_quality_p_value=0.974041	major_base=.	major_cov=42/31	major_frequency=9.733e-01	minor_base=C	minor_cov=2/0	new_cov=42/31	polymorphism_frequency=9.733e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=2/0	total_cov=44/31
RA	35	.	NC_000913	2288418	0	G	T	bias_e_value=1.04698e-06	bias_p_value=2.25562e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.6	fisher_strand_p_value=6.70603e-15	frequency=3.033e-01	ks_quality_p_value=1	major_base=G	major_cov=60/25	major_frequency=6.967e-01	minor_base=T	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.033e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=60/25	total_cov=60/62
RA	36	.	NC_000913	2326713	0	C	A	bias_e_value=3.67298	bias_p_value=7.9131e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.5	fisher_strand_p_value=4.41175e-08	frequency=3.158e-01	ks_quality_p_value=1	major_base=C	major_cov=16/36	major_frequency=6.842e-01	minor_base=A	minor_cov=23/1	new_cov=23/1	polymorphism_frequency=3.158e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=16/36	total_cov=39/37
RA	37	.	NC_000913	2609416	0	G	A	consensus_score=310.1	frequency=1	major_base=A	major_cov=60/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/32
RA	38	.	NC_000913	2817870	0	A	.	bias_e_value=1237990	bias_p_value=0.266714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.3	fisher_strand_p_value=0.0951599	frequency=2.308e-01	ks_quality_p_value=0.777803	major_base=A	major_cov=12/28	major_frequency=7.692e-01	minor_base=.	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.308e-01	polymorphism_score=47.6	prediction=polymorphism	ref_cov=12/28	total_cov=20/34
RA	39	.	NC_000913	2817877	0	C	T	bias_e_value=929945	bias_p_value=0.200348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.1	fisher_strand_p_value=0.0960853	frequency=2.182e-01	ks_quality_p_value=0.522322	major_base=C	major_cov=13/30	major_frequency=7.818e-01	minor_base=T	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.182e-01	polymorphism_score=33.7	prediction=polymorphism	ref_cov=13/30	total_cov=20/35
RA	40	.	NC_000913	2817991	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.8	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=12/18	major_frequency=7.500e-01	minor_base=C	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=2.500e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=12/18	total_cov=16/24
RA	41	.	NC_000913	2926772	0	C	A	consensus_score=214.0	frequency=1	major_base=A	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	42	.	NC_000913	2936855	0	T	G	consensus_score=280.6	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	43	.	NC_000913	2937210	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=215.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/35	major_frequency=9.848e-01	minor_base=G	minor_cov=0/1	new_cov=30/35	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	44	.	NC_000913	2938548	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=271.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/45	major_frequency=9.878e-01	minor_base=G	minor_cov=0/1	new_cov=36/45	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/46
RA	45	.	NC_000913	2949133	0	C	A	consensus_score=365.9	frequency=1	major_base=A	major_cov=56/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/46
RA	46	.	NC_000913	2990480	0	C	A	bias_e_value=5.19051	bias_p_value=1.11825e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.0	fisher_strand_p_value=6.36454e-08	frequency=2.966e-01	ks_quality_p_value=1	major_base=C	major_cov=40/43	major_frequency=7.034e-01	minor_base=A	minor_cov=34/1	new_cov=34/1	polymorphism_frequency=2.966e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=40/43	total_cov=74/44
RA	47	.	NC_000913	3032307	0	C	T	bias_e_value=1.39965e-05	bias_p_value=3.01541e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.4	fisher_strand_p_value=9.7397e-14	frequency=2.632e-01	ks_quality_p_value=1	major_base=C	major_cov=13/57	major_frequency=7.368e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.632e-01	polymorphism_score=28.1	prediction=polymorphism	ref_cov=13/57	total_cov=40/57
RA	48	.	NC_000913	3054886	0	G	T	bias_e_value=103.736	bias_p_value=2.2349e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.2	fisher_strand_p_value=1.5548e-06	frequency=2.588e-01	ks_quality_p_value=1	major_base=G	major_cov=29/34	major_frequency=7.412e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.588e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=29/34	total_cov=51/34
RA	49	.	NC_000913	3054894	0	G	T	bias_e_value=5.57202	bias_p_value=1.20044e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.4	fisher_strand_p_value=6.86171e-08	frequency=3.378e-01	ks_quality_p_value=1	major_base=G	major_cov=16/33	major_frequency=6.622e-01	minor_base=T	minor_cov=24/1	new_cov=24/1	polymorphism_frequency=3.378e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=16/33	total_cov=40/34
RA	50	.	NC_000913	3451695	0	C	A	bias_e_value=6.57044e-05	bias_p_value=1.41554e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.0	fisher_strand_p_value=4.82122e-13	frequency=2.647e-01	ks_quality_p_value=1	major_base=C	major_cov=18/57	major_frequency=7.353e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.647e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=18/57	total_cov=45/57
RA	51	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=281.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=35/41	major_frequency=9.870e-01	minor_base=A	minor_cov=0/1	new_cov=35/41	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	52	.	NC_000913	3741871	0	G	T	bias_e_value=58.0008	bias_p_value=1.24957e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.1	fisher_strand_p_value=8.33157e-07	frequency=3.981e-01	ks_quality_p_value=1	major_base=G	major_cov=28/34	major_frequency=6.019e-01	minor_base=T	minor_cov=1/40	new_cov=1/40	polymorphism_frequency=3.981e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=28/34	total_cov=29/74
RA	53	.	NC_000913	3768435	0	C	A	bias_e_value=2.35118e-05	bias_p_value=5.06539e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.6	fisher_strand_p_value=1.66494e-13	frequency=2.138e-01	ks_quality_p_value=1	major_base=C	major_cov=35/79	major_frequency=7.862e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.138e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=35/79	total_cov=66/79
RA	54	.	NC_000913	3911533	0	C	A	bias_e_value=2.64904e-06	bias_p_value=5.7071e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.4	fisher_strand_p_value=1.74643e-14	frequency=3.529e-01	ks_quality_p_value=1	major_base=C	major_cov=26/51	major_frequency=6.471e-01	minor_base=A	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=3.529e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=26/51	total_cov=68/51
RA	55	.	NC_000913	4241875	0	G	T	bias_e_value=0.0537756	bias_p_value=1.15854e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.3	fisher_strand_p_value=5.17629e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=37/19	major_frequency=6.667e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.333e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=37/19	total_cov=37/47
RA	56	.	NC_000913	4296268	0	T	C	bias_e_value=986852	bias_p_value=0.212608	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.8	fisher_strand_p_value=0.0569913	frequency=2.222e-01	ks_quality_p_value=0.953497	major_base=T	major_cov=11/10	major_frequency=7.778e-01	minor_base=C	minor_cov=6/0	new_cov=6/0	polymorphism_frequency=2.222e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=11/10	total_cov=17/10
RA	57	.	NC_000913	4296380	1	.	C	bias_e_value=1111540	bias_p_value=0.239471	consensus_score=143.6	fisher_strand_p_value=0.063834	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=27/16	major_frequency=9.348e-01	minor_base=T	minor_cov=0/3	new_cov=27/16	polymorphism_frequency=9.348e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/0	total_cov=27/19
RA	58	.	NC_000913	4296380	2	.	G	consensus_score=159.8	frequency=1	major_base=G	major_cov=27/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/19
RA	59	.	NC_000913	4360965	0	C	A	bias_e_value=6.07766e-07	bias_p_value=1.30937e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.9	fisher_strand_p_value=3.82901e-15	frequency=2.917e-01	ks_quality_p_value=1	major_base=C	major_cov=23/62	major_frequency=7.083e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.917e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=23/62	total_cov=58/62
RA	60	.	NC_000913	4406302	0	C	A	bias_e_value=5.97507	bias_p_value=1.28727e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.2	fisher_strand_p_value=7.38935e-08	frequency=3.053e-01	ks_quality_p_value=1	major_base=C	major_cov=31/35	major_frequency=6.947e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.053e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=31/35	total_cov=60/35
MC	61	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=108	right_inside_cov=0	right_outside_cov=108
MC	62	.	NC_000913	1978503	1979278	0	0	left_inside_cov=0	left_outside_cov=109	right_inside_cov=4	right_outside_cov=111
MC	63	.	NC_000913	3423812	3424503	420	264	left_inside_cov=25	left_outside_cov=27	right_inside_cov=26	right_outside_cov=27
JC	64	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=295	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=223	max_min_left=147	max_min_left_minus=147	max_min_left_plus=140	max_min_right=147	max_min_right_minus=147	max_min_right_plus=144	max_pos_hash_score=590	max_right=296	max_right_minus=287	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.02	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	65	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=36	coverage_plus=67	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=287	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=287	max_min_left=137	max_min_left_minus=86	max_min_left_plus=137	max_min_right=144	max_min_right_minus=120	max_min_right_plus=144	max_pos_hash_score=574	max_right=287	max_right_minus=287	max_right_plus=279	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.38	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	66	.	NC_000913	273955	1	NC_000913	480893	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.344e-02	junction_possible_overlap_registers=295	key=NC_000913__273955__1__NC_000913__480893__-1__0____300__300__1__0	max_left=177	max_left_minus=173	max_left_plus=177	max_min_left=132	max_min_left_minus=0	max_min_left_plus=132	max_min_right=127	max_min_right_minus=127	max_min_right_plus=123	max_pos_hash_score=590	max_right=167	max_right_minus=127	max_right_plus=167	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.344e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.56	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=3
JC	67	.	NC_000913	273955	1	NC_000913	676373	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.537e-02	junction_possible_overlap_registers=295	key=NC_000913__273955__1__NC_000913__676373__-1__0____300__300__1__0	max_left=269	max_left_minus=253	max_left_plus=269	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=135	max_min_right_minus=135	max_min_right_plus=31	max_pos_hash_score=590	max_right=135	max_right_minus=135	max_right_plus=31	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=8.537e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=6
JC	68	.	NC_000913	273955	1	NC_000913	677814	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=17	flanking_left=300	flanking_right=300	frequency=2.752e-01	junction_possible_overlap_registers=295	key=NC_000913__273955__1__NC_000913__677814__-1__0____300__300__1__0	max_left=254	max_left_minus=252	max_left_plus=254	max_min_left=145	max_min_left_minus=112	max_min_left_plus=145	max_min_right=108	max_min_right_minus=108	max_min_right_plus=59	max_pos_hash_score=590	max_right=268	max_right_minus=268	max_right_plus=261	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.37	new_junction_read_count=30	polymorphism_frequency=2.752e-01	pos_hash_score=21	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=29
JC	69	.	NC_000913	303585	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.545e-02	junction_possible_overlap_registers=295	key=NC_000913__303585__1__NC_000913__382590__-1__0____300__300__0__1	max_left=251	max_left_minus=161	max_left_plus=251	max_min_left=126	max_min_left_minus=106	max_min_left_plus=126	max_min_right=139	max_min_right_minus=138	max_min_right_plus=139	max_pos_hash_score=590	max_right=193	max_right_minus=193	max_right_plus=174	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.545e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	70	.	NC_000913	676346	-1	NC_000913	687851	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.091e-02	junction_possible_overlap_registers=291	key=NC_000913__676350__-1__NC_000913__687851__1__4____300__300__0__1	max_left=146	max_left_minus=146	max_left_plus=137	max_min_left=146	max_min_left_minus=146	max_min_left_plus=137	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=582	max_right=279	max_right_minus=279	max_right_plus=202	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.091e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	71	.	NC_000913	689045	-1	NC_000913	689226	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.556e-02	junction_possible_overlap_registers=294	key=NC_000913__689045__-1__NC_000913__689225__1__1____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=259	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=114	max_min_right_minus=45	max_min_right_plus=114	max_pos_hash_score=588	max_right=221	max_right_minus=45	max_right_plus=221	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.556e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=5
JC	72	.	NC_000913	696567	-1	NC_000913	696690	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.902e-02	junction_possible_overlap_registers=283	key=NC_000913__696567__-1__NC_000913__696678__1__12____300__300__0__0	max_left=41	max_left_minus=41	max_left_plus=41	max_min_left=8	max_min_left_minus=8	max_min_left_plus=0	max_min_right=29	max_min_right_minus=29	max_min_right_plus=29	max_pos_hash_score=566	max_right=279	max_right_minus=279	max_right_plus=29	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.902e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=3
JC	73	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=7	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=2.327e-01	junction_possible_overlap_registers=217	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=77	max_left_minus=77	max_left_plus=65	max_min_left=77	max_min_left_minus=77	max_min_left_plus=65	max_min_right=11	max_min_right_minus=11	max_min_right_plus=0	max_pos_hash_score=434	max_right=205	max_right_minus=205	max_right_plus=179	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.22	new_junction_read_count=13	polymorphism_frequency=2.327e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=78	side_1_possible_overlap_registers=295	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=12
JC	74	.	NC_000913	781577	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.679e-02	junction_possible_overlap_registers=291	key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=112	max_left_minus=85	max_left_plus=112	max_min_left=85	max_min_left_minus=85	max_min_left_plus=85	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=582	max_right=188	max_right_minus=188	max_right_plus=188	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=8.679e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=GAAG
JC	75	.	NC_000913	991758	-1	NC_000913	992014	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.437e-02	junction_possible_overlap_registers=283	key=NC_000913__991758__-1__NC_000913__992002__1__12____300__300__0__0	max_left=186	max_left_minus=186	max_left_plus=186	max_min_left=125	max_min_left_minus=0	max_min_left_plus=125	max_min_right=132	max_min_right_minus=132	max_min_right_plus=26	max_pos_hash_score=566	max_right=162	max_right_minus=132	max_right_plus=162	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.437e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=4
JC	76	.	NC_000913	1096951	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.273e-02	junction_possible_overlap_registers=295	key=NC_000913__1096951__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=131	max_left_minus=41	max_left_plus=131	max_min_left=131	max_min_left_minus=41	max_min_left_plus=131	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=191	max_right_minus=90	max_right_plus=191	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.273e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	77	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=44	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=7.649e-01	junction_possible_overlap_registers=279	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=247	max_min_left=136	max_min_left_minus=136	max_min_left_plus=128	max_min_right=142	max_min_right_minus=111	max_min_right_plus=142	max_pos_hash_score=558	max_right=280	max_right_minus=271	max_right_plus=280	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.06	new_junction_read_count=80	polymorphism_frequency=7.649e-01	pos_hash_score=49	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=16	side_1_possible_overlap_registers=295	side_1_read_count=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=79
JC	78	.	NC_000913	1207798	-1	NC_000913	1209608	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.618e-01	junction_possible_overlap_registers=294	key=NC_000913__1207798__-1__NC_000913__1209608__-1__-1__T__300__300__0__0	max_left=285	max_left_minus=0	max_left_plus=285	max_min_left=99	max_min_left_minus=0	max_min_left_plus=99	max_min_right=140	max_min_right_minus=0	max_min_right_plus=140	max_pos_hash_score=588	max_right=287	max_right_minus=0	max_right_plus=287	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=1.618e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=T
JC	79	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=29	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=7.018e-01	junction_possible_overlap_registers=279	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=276	max_min_left=141	max_min_left_minus=141	max_min_left_plus=121	max_min_right=142	max_min_right_minus=142	max_min_right_plus=134	max_pos_hash_score=558	max_right=274	max_right_minus=262	max_right_plus=274	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.78	new_junction_read_count=59	polymorphism_frequency=7.018e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.20	side_1_overlap=16	side_1_possible_overlap_registers=295	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=59
JC	80	.	NC_000913	1287262	-1	NC_000913	1287382	1	0	alignment_overlap=21	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.529e-01	junction_possible_overlap_registers=274	key=NC_000913__1287262__-1__NC_000913__1287361__1__21____300__300__0__0	max_left=104	max_left_minus=104	max_left_plus=104	max_min_left=104	max_min_left_minus=104	max_min_left_plus=104	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=548	max_right=209	max_right_minus=177	max_right_plus=209	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=1.529e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=21	side_1_possible_overlap_registers=295	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=10
JC	81	.	NC_000913	1293199	-1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.545e-02	junction_possible_overlap_registers=295	key=NC_000913__1293199__-1__NC_000913__2101749__1__0____300__300__0__1	max_left=278	max_left_minus=278	max_left_plus=48	max_min_left=119	max_min_left_minus=119	max_min_left_plus=48	max_min_right=22	max_min_right_minus=22	max_min_right_plus=0	max_pos_hash_score=590	max_right=252	max_right_minus=199	max_right_plus=252	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.545e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	82	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=62	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=139	max_min_left_minus=138	max_min_left_plus=139	max_min_right=139	max_min_right_minus=126	max_min_right_plus=139	max_pos_hash_score=582	max_right=278	max_right_minus=278	max_right_plus=268	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.44	new_junction_read_count=114	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=109
JC	83	.	NC_000913	1396044	1	NC_000913	1434514	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.649e-02	junction_possible_overlap_registers=295	key=NC_000913__1396044__1__NC_000913__1434514__1__0____300__300__1__0	max_left=297	max_left_minus=287	max_left_plus=297	max_min_left=145	max_min_left_minus=8	max_min_left_plus=145	max_min_right=89	max_min_right_minus=89	max_min_right_plus=3	max_pos_hash_score=590	max_right=290	max_right_minus=290	max_right_plus=239	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.14	new_junction_read_count=11	polymorphism_frequency=9.649e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=11
JC	84	.	NC_000913	1396044	1	NC_000913	1632782	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.902e-02	junction_possible_overlap_registers=295	key=NC_000913__1396044__1__NC_000913__1632782__-1__0____300__300__1__0	max_left=297	max_left_minus=287	max_left_plus=297	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=3	max_pos_hash_score=590	max_right=3	max_right_minus=3	max_right_plus=3	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.902e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=5
JC	85	.	NC_000913	1397238	-1	NC_000913	1434517	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.846e-02	junction_possible_overlap_registers=295	key=NC_000913__1397238__-1__NC_000913__1434517__-1__0____300__300__1__0	max_left=283	max_left_minus=215	max_left_plus=283	max_min_left=112	max_min_left_minus=112	max_min_left_plus=0	max_min_right=85	max_min_right_minus=85	max_min_right_plus=17	max_pos_hash_score=590	max_right=188	max_right_minus=188	max_right_plus=17	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.846e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=4
JC	86	.	NC_000913	1946736	-1	NC_000913	2068941	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.407e-02	junction_possible_overlap_registers=295	key=NC_000913__1946736__-1__NC_000913__2068941__1__0____300__300__0__1	max_left=296	max_left_minus=242	max_left_plus=296	max_min_left=95	max_min_left_minus=95	max_min_left_plus=0	max_min_right=79	max_min_right_minus=79	max_min_right_plus=79	max_pos_hash_score=590	max_right=205	max_right_minus=205	max_right_plus=79	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.407e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	87	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=48	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=287	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=286	max_min_left=144	max_min_left_minus=143	max_min_left_plus=144	max_min_right=136	max_min_right_minus=135	max_min_right_plus=136	max_pos_hash_score=574	max_right=291	max_right_minus=291	max_right_plus=281	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	88	.	NC_000913	2126541	-1	NC_000913	2127010	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.269e-02	junction_possible_overlap_registers=283	key=NC_000913__2126541__-1__NC_000913__2126998__1__12____300__300__0__0	max_left=89	max_left_minus=89	max_left_plus=89	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=566	max_right=100	max_right_minus=65	max_right_plus=100	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.269e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=3
JC	89	.	NC_000913	2288919	1	NC_000913	3262484	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.383e-02	junction_possible_overlap_registers=294	key=NC_000913__2288919__1__NC_000913__3262483__1__1____300__300__1__0	max_left=292	max_left_minus=200	max_left_plus=292	max_min_left=40	max_min_left_minus=40	max_min_left_plus=0	max_min_right=124	max_min_right_minus=124	max_min_right_plus=7	max_pos_hash_score=588	max_right=260	max_right_minus=260	max_right_plus=7	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=6.383e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=6
JC	90	.	NC_000913	2288919	1	NC_000913	4215399	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.167e-02	junction_possible_overlap_registers=295	key=NC_000913__2288919__1__NC_000913__4215399__-1__0____300__300__1__0	max_left=293	max_left_minus=283	max_left_plus=293	max_min_left=133	max_min_left_minus=133	max_min_left_plus=112	max_min_right=117	max_min_right_minus=117	max_min_right_plus=7	max_pos_hash_score=590	max_right=215	max_right_minus=193	max_right_plus=215	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.14	new_junction_read_count=11	polymorphism_frequency=9.167e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=109	side_2_redundant=0	total_non_overlap_reads=10
JC	91	.	NC_000913	2290113	-1	NC_000913	3262487	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.292e-02	junction_possible_overlap_registers=295	key=NC_000913__2290113__-1__NC_000913__3262487__-1__0____300__300__1__0	max_left=244	max_left_minus=244	max_left_plus=31	max_min_left=31	max_min_left_minus=0	max_min_left_plus=31	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=590	max_right=269	max_right_minus=134	max_right_plus=269	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=7.292e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=7
JC	92	.	NC_000913	2290113	-1	NC_000913	4215396	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.195e-02	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__4215395__1__1____300__300__1__0	max_left=233	max_left_minus=233	max_left_plus=217	max_min_left=113	max_min_left_minus=113	max_min_left_plus=0	max_min_right=81	max_min_right_minus=66	max_min_right_plus=81	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=81	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=6.195e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=7
JC	93	.	NC_000913	2521006	-1	NC_000913	2521249	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.447e-01	junction_possible_overlap_registers=219	key=NC_000913__2521006__-1__NC_000913__2521173__1__76____300__300__0__0	max_left=218	max_left_minus=218	max_left_plus=112	max_min_left=9	max_min_left_minus=9	max_min_left_plus=2	max_min_right=89	max_min_right_minus=89	max_min_right_plus=89	max_pos_hash_score=438	max_right=222	max_right_minus=100	max_right_plus=222	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.12	new_junction_read_count=7	polymorphism_frequency=1.447e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=76	side_1_possible_overlap_registers=295	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=7
JC	94	.	NC_000913	2877772	-1	NC_000913	2878324	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.205e-02	junction_possible_overlap_registers=283	key=NC_000913__2877772__-1__NC_000913__2878312__1__12____300__300__0__0	max_left=265	max_left_minus=265	max_left_plus=45	max_min_left=45	max_min_left_minus=45	max_min_left_plus=45	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=566	max_right=85	max_right_minus=85	max_right_plus=85	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.205e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
JC	95	.	NC_000913	2947467	-1	NC_000913	2947688	1	0	alignment_overlap=83	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.796e-01	junction_possible_overlap_registers=212	key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0	max_left=192	max_left_minus=192	max_left_plus=125	max_min_left=96	max_min_left_minus=23	max_min_left_plus=96	max_min_right=90	max_min_right_minus=80	max_min_right_plus=90	max_pos_hash_score=424	max_right=199	max_right_minus=199	max_right_plus=133	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.16	new_junction_read_count=9	polymorphism_frequency=1.796e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=83	side_1_possible_overlap_registers=295	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=9
JC	96	.	NC_000913	3269899	-1	NC_000913	3270239	1	0	alignment_overlap=18	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.968e-02	junction_possible_overlap_registers=277	key=NC_000913__3269899__-1__NC_000913__3270221__1__18____300__300__0__0	max_left=153	max_left_minus=153	max_left_plus=138	max_min_left=138	max_min_left_minus=0	max_min_left_plus=138	max_min_right=128	max_min_right_minus=128	max_min_right_plus=42	max_pos_hash_score=554	max_right=147	max_right_minus=128	max_right_plus=147	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=5.968e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=18	side_1_possible_overlap_registers=295	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=6
JC	97	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=7	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.412e-01	junction_possible_overlap_registers=237	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=187	max_left_minus=187	max_left_plus=131	max_min_left=114	max_min_left_minus=114	max_min_left_plus=100	max_min_right=109	max_min_right_minus=67	max_min_right_plus=109	max_pos_hash_score=474	max_right=238	max_right_minus=225	max_right_plus=238	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.20	new_junction_read_count=13	polymorphism_frequency=1.412e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=58	side_1_possible_overlap_registers=295	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=13
JC	98	.	NC_000913	3652036	1	NC_000913	3906375	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=5.941e-02	junction_possible_overlap_registers=294	key=NC_000913__3652036__1__NC_000913__3906376__-1__1____300__300__1__0	max_left=258	max_left_minus=252	max_left_plus=258	max_min_left=21	max_min_left_minus=0	max_min_left_plus=21	max_min_right=109	max_min_right_minus=47	max_min_right_plus=109	max_pos_hash_score=588	max_right=278	max_right_minus=47	max_right_plus=278	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=5.941e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=6
JC	99	.	NC_000913	4368261	1	NC_000913	4368276	-1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.390e-02	junction_possible_overlap_registers=294	key=NC_000913__4368261__1__NC_000913__4368277__-1__1____300__300__0__0	max_left=262	max_left_minus=205	max_left_plus=262	max_min_left=121	max_min_left_minus=121	max_min_left_plus=0	max_min_right=138	max_min_right_minus=138	max_min_right_plus=88	max_pos_hash_score=588	max_right=290	max_right_minus=290	max_right_plus=88	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=8.390e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=1	side_1_possible_overlap_registers=295	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=8
JC	100	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.907e-02	junction_possible_overlap_registers=286	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=252	max_min_left=114	max_min_left_minus=0	max_min_left_plus=114	max_min_right=66	max_min_right_minus=4	max_min_right_plus=66	max_pos_hash_score=572	max_right=177	max_right_minus=4	max_right_plus=177	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.907e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=9	side_1_possible_overlap_registers=295	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
UN	101	.	NC_000913	15663	16465
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UN	247	.	NC_000913	4040330	4040330
UN	248	.	NC_000913	4040336	4040337
UN	249	.	NC_000913	4166542	4166599
UN	250	.	NC_000913	4166902	4167984
UN	251	.	NC_000913	4168823	4171394
UN	252	.	NC_000913	4171396	4171406
UN	253	.	NC_000913	4171408	4171421
UN	254	.	NC_000913	4176825	4176825
UN	255	.	NC_000913	4176829	4176833
UN	256	.	NC_000913	4176836	4176837
UN	257	.	NC_000913	4176839	4176840
UN	258	.	NC_000913	4176845	4176849
UN	259	.	NC_000913	4176851	4176851
UN	260	.	NC_000913	4176853	4176853
UN	261	.	NC_000913	4176855	4176855
UN	262	.	NC_000913	4208385	4209519
UN	263	.	NC_000913	4210252	4210253
UN	264	.	NC_000913	4210258	4212859
UN	265	.	NC_000913	4498476	4499256
UN	266	.	NC_000913	4507741	4508425