mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 202 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 339,986 | 0 | G | A | 66.7% | 27.1 / 18.7 | 27 | R73Q (CGA→CAA) | yahH | putative uncharacterized protein YahH |
| * | NC_000913 | 339,979 | 0 | G | A | 63.0% | 19.0 / 18.2 | 27 | V71M (GTG→ATG) | yahH | putative uncharacterized protein YahH |
| * | NC_000913 | 579,285 | 0 | T | C | 54.8% | 33.3 / inf | 240 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,676 | 0 | A | G | 54.3% | 39.1 / 253.6 | 175 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,661 | 0 | C | G | 54.1% | 44.5 / 280.7 | 183 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,457 | 0 | A | G | 53.7% | 47.5 / inf | 298 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,540 | 0 | T | C | 53.3% | 47.3 / inf | 305 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,699 | 0 | A | C | 53.0% | 41.5 / 249.9 | 168 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,578 | 0 | T | C | 52.9% | 46.4 / 238.9 | 173 | E103G (GAA→GGA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,385 | 0 | A | G | 52.8% | 52.8 / inf | 300 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,482 | 0 | T | C | 52.6% | 23.2 / 133.6 | 96 | N135S (AAC→AGC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,484 | 0 | G | T | 52.6% | 25.7 / 141.8 | 95 | N134K (AAC→AAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,597 | 0 | C | A | 52.4% | 59.3 / 283.6 | 186 | V97F (GTT→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,404 | 0 | A | G | 52.4% | ‑4.0 / 39.2 | 43 | I161T (ATC→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,724 | 0 | G | A | 52.3% | 38.9 / 210.1 | 155 | F54F (TTC→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,658 | 0 | A | G | 52.1% | 59.8 / 281.3 | 188 | V76V (GTT→GTC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 4,273,339 | 0 | C | T | 51.8% | 1.7 / 122.7 | 83 | R178H (CGT→CAT) | uvrA | UvrABC excision nuclease subunit A |
| * | NC_000913 | 1,634,569 | 0 | A | T | 51.8% | 62.3 / inf | 170 | F106Y (TTT→TAT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,571 | 0 | C | T | 51.8% | 50.8 / 250.4 | 170 | E105E (GAG→GAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 580,115 | 0 | C | T | 51.4% | 33.0 / 259.3 | 179 | intergenic (+29/+136) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| Marginal new junction evidence (lowest skew 10 of 82 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3708541 | 36 (0.390) | 23 (0.260) | 19/570 | 3.1 | 38.1% | intergenic (‑836/+75) | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| ? | NC_000913 | 3708644 = | 40 (0.450) | noncoding (49/77 nt) | proK | tRNA‑Pro | |||||
| * | ? | NC_000913 | = 2521006 | 56 (0.610) | 23 (0.340) | 13/438 | 3.2 | 39.5% | noncoding (76/76 nt) | valU | tRNA‑Val |
| ? | NC_000913 | 2521127 = | 29 (0.430) | intergenic (+1/‑46) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 1743496 = | 50 (0.550) | 23 (0.250) | 18/590 | 3.4 | 31.5% | coding (40/1374 nt) | mdtK | multidrug efflux pump MdtK |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 270541 = | NA (NA) | 22 (0.240) | 18/590 | 3.4 | 15.3% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 2042478 | 122 (1.330) | coding (111/531 nt) | yodB | putative cytochrome b561 YodB | |||||
| * | ? | NC_000913 | = 1470516 | NA (NA) | 21 (0.230) | 17/588 | 3.6 | 14.6% | noncoding (1221/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 2042477 = | 123 (1.350) | coding (110/531 nt) | yodB | putative cytochrome b561 YodB | |||||
| * | ? | NC_000913 | = 4001896 | 66 (0.720) | 23 (0.260) | 16/572 | 3.7 | 28.6% | coding (471/951 nt) | corA | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| ? | NC_000913 | 4002071 = | 51 (0.570) | coding (646/951 nt) | corA | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter | |||||
| * | ? | NC_000913 | = 2662401 | 39 (0.430) | 18 (0.240) | 13/490 | 3.7 | 33.8% | intergenic (‑270/+182) | iscR/trmJ | DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase |
| ? | NC_000913 | 2662584 = | 38 (0.500) | coding (740/741 nt) | trmJ | tRNA Cm32/Um32 methyltransferase | |||||
| * | ? | NC_000913 | = 1287329 | 60 (0.660) | 12 (0.190) | 10/416 | 3.8 | 21.4% | intergenic (‑1/+209) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr |
| ? | NC_000913 | 1287624 = | 46 (0.710) | intergenic (‑2/+158) | tyrT/purU | tRNA‑Tyr/formyltetrahydrofolate deformylase | |||||
| * | ? | NC_000913 | = 275149 | NA (NA) | 18 (0.200) | 16/588 | 3.8 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 507163 | 0 (0.000) | intergenic (‑81/‑41) | ybaK/chiX | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/small regulatory RNA ChiX | |||||
| * | ? | NC_000913 | = 696830 | 53 (0.580) | 13 (0.190) | 10/436 | 4.0 | 24.5% | noncoding (1/75 nt) | glnW | tRNA‑Gln |
| ? | NC_000913 | 696940 = | 41 (0.610) | intergenic (‑1/+23) | glnU/leuW | tRNA‑Gln/tRNA‑Leu | |||||