| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 270541 = | NA (NA) | 22 (0.240) | 18/590 | 3.4 | 15.3% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 2042478 | 122 (1.330) | coding (111/531 nt) | yodB | putative cytochrome b561 YodB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAACCAGCTCGTATCTCCTCGCGCTCAGACAGTGTCAGGTGAGCTACAGCCCGCTTACGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/270815‑270541‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTATTGTGTATGGAATCCGTTAT < NC_000913/2042478‑2042181 CAAACCAGCTCGTATCTCCTCGCGCTCAGACAGTGTCAGGTGAGCTACAGCCCGCTTACGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCA > 2:492044/1‑300 CTCGTATCTCCTCGCGCTCAGACAGTGTCAGGTGAGCTACAGCCCGCTTACGCTCATGGGGTTTTATGCCGCAAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTC > 2:626214/1‑300 GTATCTCCTCGCGCTCAGACAGTTTCAGGTGAGCTACAGCCCGCTTACGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCAT < 2:678960/300‑1 ATCTCCTCGCGCTCAGACAGTGTCAGGTGAGCTACAGCCCGCTTACGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCG < 1:691966/300‑1 GTGTCAGGTGAGCTACNGCCCGCTTACGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCNGCCACGGAGTTCCATCGCNGGCATAGGTTATTtgca > 1:616525/1‑296 GCCCGCTTACGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCC < 1:272606/300‑1 CGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAAT > 1:274802/1‑300 CCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATT > 2:20192/1‑300 CCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATT > 1:15296/1‑300 CCTTAACATAGTGAAGATCGTTCAGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTCCAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCATTATCCAATGTAAATAAATTTGAGTTTTTGAGCATCGGTTCctt > 2:18825/1‑297 ATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAA > 1:468369/1‑300 AGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTAT > 1:269669/1‑300 GCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCAT > 1:102992/1‑300 TAAATGTTCGTCTCATTCAAAAAACCTCCACAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAACTACTACCTTTNGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAATCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCCATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTAATAGTGCATATTG < 2:585493/300‑1 ACCTCCGCAACCCCATGNTTTCACATAACTGTTGCGNTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCANCCAATATAAGCAATGG < 1:626214/300‑1 GTTGACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCATTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTAT < 2:15296/299‑1 GACCAATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTANCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTATTGT > 2:548737/1‑299 ATTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCAAAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCAGTATTTTGTAT > 2:379288/1‑298 TTGAATCTACAACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑TGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGGAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGTTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTATTGTGTATGGA < 2:274802/300‑1 AACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑TGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTNGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTATTGTGTATGGAATCCGTTAT < 2:585536/299‑1 AACTACGACCTTTAGGAAACCAGCCACGGAGTTCTATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATGTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTATTGTGTATGGAATCCGTTAT < 2:207860/299‑1 AACTACGACCTTGAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACATTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTATTGTGTATGGAATCCGTTAT < 2:209070/299‑1 CAAACCAGCTCGTATCTCCTCGCGCTCAGACAGTGTCAGGTGAGCTACAGCCCGCTTACGCTCATGGGGTTTTATGCCGCCAGTATCCCTTAACATAGTGAAGATCGTTCCGGGTTTTGAACCCAGGATATTCGCTATTTCACTGAAGCCTGTTCCGTTCTTCCATAGTTCAAAAACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/270815‑270541‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTACTACCTTTAGGAAACCAGCCACGGAGTTCCATCGC‑GGCATAGGTTATTGCAACGAAAAGCAGCGTTATCCAATGTAAATAAATTTGAGTTTTTGAGAATCGGTTCATTTTTGTAGCTCCTGTGATTTTCACAGTCAAGCTATCCCACGAACCTTAAAAATTCCTTATACAGATGTGGTTTTAATAATTTGTTATTTAAAAAATTGATAGTGCATATTGTAACCAGCCAATATAAGCAATGGCGTGAGCACAGGTATCTTTCTCTGTTGGCCGTATTGTGTATGGAATCCGTTAT < NC_000913/2042478‑2042181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |