#=GENOME_DIFF	1.0
#=CREATED	16:12:07 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8768_S21_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8768_S21_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8768_S21_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8768_S21_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8768_S21_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	442320709
#=CONVERTED-READS	1495182
#=INPUT-BASES	442420320
#=INPUT-READS	1495522
#=MAPPED-BASES	415990330
#=MAPPED-READS	1406969
SNP	1	257	NC_000913	160220	A
SNP	2	258	NC_000913	246747	T
DEL	3	763,780	NC_000913	257908	776
SNP	4	259	NC_000913	284535	G
SNP	5	260	NC_000913	313543	A
SNP	6	262	NC_000913	339935	T
SNP	7	263	NC_000913	339941	T
SNP	8	264	NC_000913	339958	A
SNP	9	271	NC_000913	393962	T
SNP	10	272	NC_000913	465005	A
SNP	11	273	NC_000913	472849	G
SNP	12	274	NC_000913	495622	T
SNP	13	275	NC_000913	534742	A
SNP	14	325	NC_000913	578331	T
SNP	15	326	NC_000913	578427	C
SNP	16	327	NC_000913	578571	T
SNP	17	328	NC_000913	578574	C
SNP	18	329	NC_000913	578605	G
SNP	19	330	NC_000913	578729	G
SNP	20	331	NC_000913	578809	C
SNP	21	332	NC_000913	578811	G
SNP	22	333	NC_000913	578831	C
SNP	23	334	NC_000913	579004	T
DEL	24	335	NC_000913	579099	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	25	336	NC_000913	579127	C
SNP	26	337	NC_000913	579134	C
SNP	27	338	NC_000913	579146	G
SNP	28	420	NC_000913	582597	T
SNP	29	422	NC_000913	694941	A
SNP	30	423	NC_000913	696470	T
SNP	31	424	NC_000913	708774	A
SNP	32	425	NC_000913	721604	A
SNP	33	427	NC_000913	780624	T
SNP	34	428	NC_000913	789580	A
SNP	35	431	NC_000913	968837	A
SNP	36	432	NC_000913	1040126	T
SNP	37	433	NC_000913	1061935	A
SUB	38	434,435	NC_000913	1111727	2	TT
SNP	39	436	NC_000913	1169836	G
SNP	40	437	NC_000913	1189980	G
SNP	41	438	NC_000913	1196220	T
SNP	42	439	NC_000913	1196232	T
SNP	43	440	NC_000913	1196245	C
SNP	44	441	NC_000913	1196247	G
SNP	45	442	NC_000913	1196277	T
SNP	46	443	NC_000913	1196280	C
SNP	47	444	NC_000913	1196283	G
SNP	48	445	NC_000913	1196292	T
SNP	49	452	NC_000913	1301992	T
SNP	50	453	NC_000913	1306736	G
SNP	51	454	NC_000913	1308684	C
SUB	52	455,456	NC_000913	1331059	2	AT
SNP	53	457	NC_000913	1337394	G
SNP	54	458	NC_000913	1358859	C
SNP	55	477	NC_000913	1429069	A
SNP	56	478	NC_000913	1429072	C
SNP	57	479	NC_000913	1429111	C
SNP	58	480	NC_000913	1429114	T
SNP	59	481	NC_000913	1429126	C
SNP	60	482	NC_000913	1429128	G
SNP	61	483	NC_000913	1429160	G
SNP	62	484	NC_000913	1429164	G
SNP	63	485	NC_000913	1429171	G
SNP	64	486	NC_000913	1429204	T
SNP	65	487	NC_000913	1429207	G
SNP	66	488	NC_000913	1429225	T
SNP	67	489	NC_000913	1429228	C
SNP	68	490	NC_000913	1429231	C
SUB	69	491,492	NC_000913	1429235	2	CA
SNP	70	493	NC_000913	1429240	T
SNP	71	494	NC_000913	1429243	C
SNP	72	495	NC_000913	1429246	T
SNP	73	496	NC_000913	1429249	T
SNP	74	497	NC_000913	1429252	A
SNP	75	498	NC_000913	1429255	A
SNP	76	499	NC_000913	1429258	G
SNP	77	500	NC_000913	1429261	C
SNP	78	501	NC_000913	1429273	C
SNP	79	502	NC_000913	1429291	A
SNP	80	503	NC_000913	1429297	G
SNP	81	504	NC_000913	1429300	G
SNP	82	505	NC_000913	1429319	T
SNP	83	506	NC_000913	1429345	G
SUB	84	507,508	NC_000913	1429353	2	TG
SNP	85	509	NC_000913	1429360	T
SNP	86	510	NC_000913	1429364	C
SNP	87	511	NC_000913	1429404	T
SUB	88	512,513	NC_000913	1429416	2	GT
SNP	89	514	NC_000913	1429425	A
SNP	90	515	NC_000913	1429435	A
SNP	91	516	NC_000913	1429442	G
SNP	92	517	NC_000913	1429444	C
SUB	93	518,519	NC_000913	1429453	2	TG
SUB	94	520,521,522	NC_000913	1429462	3	TGC
SNP	95	523	NC_000913	1429466	C
SUB	96	524,525	NC_000913	1429470	2	TC
SUB	97	526,527	NC_000913	1429474	2	GG
SNP	98	528	NC_000913	1429479	T
SNP	99	529	NC_000913	1429482	T
SNP	100	530	NC_000913	1429484	A
SUB	101	531,532	NC_000913	1429492	2	AA
SNP	102	533	NC_000913	1429495	T
SNP	103	534	NC_000913	1429510	C
SNP	104	535	NC_000913	1429522	C
SNP	105	536	NC_000913	1429534	T
SNP	106	537	NC_000913	1429537	A
SNP	107	538	NC_000913	1429543	A
SUB	108	539,540	NC_000913	1429550	2	GA
SNP	109	541	NC_000913	1429558	C
SNP	110	542	NC_000913	1429562	G
SNP	111	543	NC_000913	1429569	A
SNP	112	544	NC_000913	1429571	G
SNP	113	545	NC_000913	1429580	G
SUB	114	546,547,548	NC_000913	1429597	3	GGA
SNP	115	549	NC_000913	1429609	C
SNP	116	550	NC_000913	1429612	A
SNP	117	551	NC_000913	1429615	C
SNP	118	552	NC_000913	1429632	A
SNP	119	553	NC_000913	1429682	G
SNP	120	554	NC_000913	1429692	A
SNP	121	555	NC_000913	1429702	C
SNP	122	556	NC_000913	1429708	G
SNP	123	557	NC_000913	1429714	C
SNP	124	558	NC_000913	1429724	G
SNP	125	559	NC_000913	1429732	A
SNP	126	560	NC_000913	1429735	G
SNP	127	561	NC_000913	1429741	G
SNP	128	562	NC_000913	1429744	C
SNP	129	563	NC_000913	1429747	C
SNP	130	564	NC_000913	1429750	T
SNP	131	565	NC_000913	1429753	A
SNP	132	566	NC_000913	1429756	A
SNP	133	567	NC_000913	1429759	A
SNP	134	568	NC_000913	1429767	T
SNP	135	569	NC_000913	1429780	G
SNP	136	570	NC_000913	1429783	A
SNP	137	571	NC_000913	1429816	T
SNP	138	572	NC_000913	1429820	G
SNP	139	573	NC_000913	1429823	C
SNP	140	585	NC_000913	1591711	A
SNP	141	586	NC_000913	1629247	T
SNP	142	616	NC_000913	1643679	T
SNP	143	617	NC_000913	1652331	C
SNP	144	619	NC_000913	1721136	T
DEL	145	769,841	NC_000913	1757511	42
SNP	146	620	NC_000913	1776715	T
SNP	147	621	NC_000913	1894839	C
MOB	148	842,843	NC_000913	1907165	IS150	-1	3
SNP	149	631	NC_000913	2040433	A
SNP	150	632	NC_000913	2120969	A
SNP	151	633	NC_000913	2142598	A
DEL	152	635,636	NC_000913	2173363	2
SNP	153	637	NC_000913	2173448	T
SNP	154	638	NC_000913	2233609	T
MOB	155	856,857	NC_000913	2239316	IS5	-1	4
SNP	156	639	NC_000913	2242247	T
SNP	157	640	NC_000913	2247134	C
SNP	158	643	NC_000913	2391119	A
SNP	159	644	NC_000913	2392587	C
SNP	160	645	NC_000913	2404402	A
SUB	161	646,647	NC_000913	2452389	2	AA
SNP	162	649	NC_000913	2481608	G
SNP	163	650	NC_000913	2498392	C
SNP	164	651	NC_000913	2514457	T
SNP	165	652	NC_000913	2546804	A
DEL	166	771,867	NC_000913	2558699	6790
SNP	167	653	NC_000913	2577937	C
SNP	168	654	NC_000913	2587112	T
SNP	169	655	NC_000913	2745600	G
SNP	170	657	NC_000913	2774947	A
SNP	171	658	NC_000913	2787591	G
SNP	172	661	NC_000913	2867455	A
MOB	173	871,872	NC_000913	2876678	IS5	-1	4
SNP	174	662	NC_000913	2880635	C
SNP	175	665	NC_000913	2926772	A
DEL	176	668	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	177	670	NC_000913	3070858	G
DEL	178	772,858	NC_000913	3131341	128	mediated=IS5
DEL	179	672	NC_000913	3207549	1
SNP	180	673	NC_000913	3213233	C
SNP	181	674	NC_000913	3252295	T
MOB	182	859,861	NC_000913	3262484	IS5	1	4
SNP	183	675	NC_000913	3275902	T
SNP	184	676	NC_000913	3296481	A
SNP	185	677	NC_000913	3329743	T
SNP	186	679	NC_000913	3388041	G
SNP	187	680	NC_000913	3411689	T
SNP	188	681	NC_000913	3433900	T
SNP	189	682	NC_000913	3474425	C
SNP	190	683	NC_000913	3486175	A
SNP	191	684	NC_000913	3486502	T
SNP	192	685	NC_000913	3497106	A
SNP	193	686	NC_000913	3507249	T
SNP	194	687	NC_000913	3511466	T
DEL	195	774,883	NC_000913	3535343	5
SUB	196	688,689	NC_000913	3555047	2	TG
SNP	197	690	NC_000913	3560362	A
INS	198	691	NC_000913	3560455	G
SNP	199	692	NC_000913	3623644	C
SNP	200	693	NC_000913	3646970	T
SNP	201	694	NC_000913	3647428	T
SNP	202	695	NC_000913	3707947	A
SNP	203	696	NC_000913	3719429	A
SNP	204	697	NC_000913	3721455	T
SNP	205	698	NC_000913	3725176	G
SUB	206	699,700	NC_000913	3729440	2	TT
SNP	207	701	NC_000913	3730560	T
SNP	208	704	NC_000913	3769744	C
SNP	209	705	NC_000913	3770539	T
DEL	210	706	NC_000913	3773173	1
SNP	211	707	NC_000913	3773176	T
INS	212	708	NC_000913	3815883	C
SNP	213	709	NC_000913	3817167	T
SNP	214	710	NC_000913	3866301	G
SNP	215	711	NC_000913	3866311	A
DEL	216	775,889	NC_000913	3890274	36
SNP	217	712	NC_000913	3897907	A
SNP	218	714	NC_000913	3993531	C
SNP	219	716	NC_000913	4143988	A
SNP	220	717	NC_000913	4148224	A
SNP	221	718	NC_000913	4165712	A
SNP	222	719	NC_000913	4180208	G
SNP	223	720	NC_000913	4193996	G
SNP	224	721	NC_000913	4201066	A
SNP	225	722	NC_000913	4202911	A
SNP	226	723	NC_000913	4204541	A
SNP	227	724	NC_000913	4208132	A
SNP	228	725	NC_000913	4217676	A
SNP	229	726	NC_000913	4223638	C
SNP	230	727	NC_000913	4227849	A
SNP	231	728	NC_000913	4236257	A
SNP	232	729	NC_000913	4241458	A
SNP	233	731	NC_000913	4243075	T
SNP	234	733	NC_000913	4274290	T
SNP	235	734	NC_000913	4288777	T
INS	236	736,737	NC_000913	4296381	GC
SNP	237	738	NC_000913	4307052	T
SNP	238	739	NC_000913	4307221	C
SNP	239	740	NC_000913	4325644	T
SNP	240	749	NC_000913	4331890	T
INS	241	750	NC_000913	4338117	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
MOB	242	892,893	NC_000913	4343759	IS2	-1	5
SNP	243	751	NC_000913	4437890	T
SNP	244	752	NC_000913	4447046	T
SNP	245	753	NC_000913	4473900	T
SNP	246	754	NC_000913	4475493	C
SNP	247	755	NC_000913	4476605	A
SNP	248	756	NC_000913	4489016	T
SNP	249	757	NC_000913	4510238	G
SNP	250	758	NC_000913	4532409	G
SNP	251	760	NC_000913	4546601	T
SNP	252	761	NC_000913	4636925	C
SNP	253	762	NC_000913	4638240	A
RA	254	.	NC_000913	58065	0	C	A	bias_e_value=0.0863622	bias_p_value=1.86059e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.9	fisher_strand_p_value=8.50144e-10	frequency=3.895e-01	ks_quality_p_value=1	major_base=C	major_cov=25/33	major_frequency=6.105e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.895e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=25/33	total_cov=62/33
RA	255	.	NC_000913	141849	0	C	A	bias_e_value=0.00932528	bias_p_value=2.00904e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.7	fisher_strand_p_value=8.29756e-11	frequency=3.077e-01	ks_quality_p_value=1	major_base=C	major_cov=37/53	major_frequency=6.923e-01	minor_base=A	minor_cov=39/1	new_cov=39/1	polymorphism_frequency=3.077e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=37/53	total_cov=76/54
RA	256	.	NC_000913	147802	0	C	A	bias_e_value=0.000294546	bias_p_value=6.3457e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.2	fisher_strand_p_value=2.28214e-12	frequency=2.687e-01	ks_quality_p_value=1	major_base=C	major_cov=37/61	major_frequency=7.313e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.687e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=37/61	total_cov=73/61
RA	257	.	NC_000913	160220	0	G	A	consensus_score=354.8	frequency=1	major_base=A	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	258	.	NC_000913	246747	0	G	T	consensus_score=393.8	frequency=1	major_base=T	major_cov=53/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/57
RA	259	.	NC_000913	284535	0	T	G	consensus_score=112.4	frequency=1	major_base=G	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	260	.	NC_000913	313543	0	G	A	consensus_score=358.6	frequency=1	major_base=A	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	261	.	NC_000913	314793	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.9	fisher_strand_p_value=1	frequency=3.644e-01	ks_quality_p_value=1	major_base=C	major_cov=39/36	major_frequency=6.356e-01	minor_base=T	minor_cov=23/20	new_cov=23/20	polymorphism_frequency=3.644e-01	polymorphism_score=113.7	prediction=polymorphism	ref_cov=39/36	total_cov=64/56
RA	262	.	NC_000913	339935	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=78.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/16	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=13/16	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/17
RA	263	.	NC_000913	339941	0	C	T	consensus_score=82.4	frequency=1	major_base=T	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	264	.	NC_000913	339958	0	G	A	consensus_score=85.4	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	265	.	NC_000913	339979	0	G	A	bias_e_value=3658330	bias_p_value=0.788152	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.0	fisher_strand_p_value=0.424409	frequency=6.296e-01	ks_quality_p_value=1	major_base=A	major_cov=9/8	major_frequency=6.296e-01	minor_base=G	minor_cov=3/7	new_cov=9/8	polymorphism_frequency=6.296e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=3/7	total_cov=12/15
RA	266	.	NC_000913	339986	0	G	A	bias_e_value=2547850	bias_p_value=0.54891	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.1	fisher_strand_p_value=0.217239	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=10/8	major_frequency=6.667e-01	minor_base=G	minor_cov=2/7	new_cov=10/8	polymorphism_frequency=6.667e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=2/7	total_cov=12/15
RA	267	.	NC_000913	339992	0	C	.	bias_e_value=1341780	bias_p_value=0.289074	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.8	fisher_strand_p_value=0.0899046	frequency=2.963e-01	ks_quality_p_value=0.920942	major_base=C	major_cov=10/9	major_frequency=7.037e-01	minor_base=.	minor_cov=1/7	new_cov=1/7	polymorphism_frequency=2.963e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=10/9	total_cov=11/16
RA	268	.	NC_000913	375168	0	G	A	bias_e_value=2872930	bias_p_value=0.618945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.9	fisher_strand_p_value=0.720513	frequency=2.326e-01	ks_quality_p_value=0.369907	major_base=G	major_cov=16/17	major_frequency=7.674e-01	minor_base=A	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.326e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=16/17	total_cov=22/21
RA	269	.	NC_000913	375174	0	C	T	bias_e_value=4497290	bias_p_value=0.968898	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.0	fisher_strand_p_value=1	frequency=2.326e-01	ks_quality_p_value=0.761193	major_base=C	major_cov=16/17	major_frequency=7.674e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.326e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=16/17	total_cov=21/22
RA	270	.	NC_000913	375188	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.6	fisher_strand_p_value=1	frequency=2.273e-01	ks_quality_p_value=1	major_base=C	major_cov=16/18	major_frequency=7.727e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.273e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=16/18	total_cov=21/23
RA	271	.	NC_000913	393962	0	C	T	consensus_score=285.1	frequency=1	major_base=T	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	272	.	NC_000913	465005	0	G	A	consensus_score=317.8	frequency=1	major_base=A	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	273	.	NC_000913	472849	0	A	G	consensus_score=352.0	frequency=1	major_base=G	major_cov=43/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/52
RA	274	.	NC_000913	495622	0	C	T	consensus_score=413.4	frequency=1	major_base=T	major_cov=79/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/42
RA	275	.	NC_000913	534742	0	G	A	consensus_score=269.3	frequency=1	major_base=A	major_cov=49/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/32
RA	276	.	NC_000913	566414	0	A	G	bias_e_value=3906750	bias_p_value=0.841673	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.1	fisher_strand_p_value=0.493001	frequency=2.252e-01	ks_quality_p_value=1	major_base=A	major_cov=50/36	major_frequency=7.748e-01	minor_base=G	minor_cov=12/13	new_cov=12/13	polymorphism_frequency=2.252e-01	polymorphism_score=59.6	prediction=polymorphism	ref_cov=50/36	total_cov=62/51
RA	277	.	NC_000913	566435	0	G	A	bias_e_value=537688	bias_p_value=0.11584	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.4	fisher_strand_p_value=0.0246261	frequency=3.182e-01	ks_quality_p_value=1	major_base=G	major_cov=54/36	major_frequency=6.818e-01	minor_base=A	minor_cov=16/26	new_cov=16/26	polymorphism_frequency=3.182e-01	polymorphism_score=116.4	prediction=polymorphism	ref_cov=54/36	total_cov=70/62
RA	278	.	NC_000913	566444	0	T	C	bias_e_value=717748	bias_p_value=0.154632	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.6	fisher_strand_p_value=0.0421717	frequency=3.139e-01	ks_quality_p_value=0.846241	major_base=T	major_cov=54/40	major_frequency=6.861e-01	minor_base=C	minor_cov=16/27	new_cov=16/27	polymorphism_frequency=3.139e-01	polymorphism_score=119.6	prediction=polymorphism	ref_cov=54/40	total_cov=70/67
RA	279	.	NC_000913	566451	0	T	C	bias_e_value=502613	bias_p_value=0.108283	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.6	fisher_strand_p_value=0.0226089	frequency=3.357e-01	ks_quality_p_value=1	major_base=T	major_cov=57/38	major_frequency=6.643e-01	minor_base=C	minor_cov=19/29	new_cov=19/29	polymorphism_frequency=3.357e-01	polymorphism_score=128.5	prediction=polymorphism	ref_cov=57/38	total_cov=76/68
RA	280	.	NC_000913	566463	0	T	C	bias_e_value=2153210	bias_p_value=0.463889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.4	fisher_strand_p_value=0.167067	frequency=3.446e-01	ks_quality_p_value=0.99292	major_base=T	major_cov=56/41	major_frequency=6.554e-01	minor_base=C	minor_cov=23/28	new_cov=23/28	polymorphism_frequency=3.446e-01	polymorphism_score=146.2	prediction=polymorphism	ref_cov=56/41	total_cov=79/69
RA	281	.	NC_000913	566468	0	C	T	bias_e_value=1853190	bias_p_value=0.399252	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.5	fisher_strand_p_value=0.131979	frequency=3.642e-01	ks_quality_p_value=1	major_base=C	major_cov=56/40	major_frequency=6.358e-01	minor_base=T	minor_cov=25/30	new_cov=25/30	polymorphism_frequency=3.642e-01	polymorphism_score=153.3	prediction=polymorphism	ref_cov=56/40	total_cov=81/70
RA	282	.	NC_000913	566492	0	G	T	bias_e_value=1905250	bias_p_value=0.410468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.5	fisher_strand_p_value=0.137575	frequency=3.846e-01	ks_quality_p_value=1	major_base=G	major_cov=56/40	major_frequency=6.154e-01	minor_base=T	minor_cov=27/33	new_cov=27/33	polymorphism_frequency=3.846e-01	polymorphism_score=156.8	prediction=polymorphism	ref_cov=56/40	total_cov=83/73
RA	283	.	NC_000913	566493	0	G	A	bias_e_value=2136870	bias_p_value=0.460368	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.0	fisher_strand_p_value=0.185715	frequency=3.782e-01	ks_quality_p_value=0.882701	major_base=G	major_cov=56/41	major_frequency=6.218e-01	minor_base=A	minor_cov=27/32	new_cov=27/32	polymorphism_frequency=3.782e-01	polymorphism_score=173.8	prediction=polymorphism	ref_cov=56/41	total_cov=83/73
RA	284	.	NC_000913	566498	0	C	T	bias_e_value=1856950	bias_p_value=0.400062	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.3	fisher_strand_p_value=0.142279	frequency=3.846e-01	ks_quality_p_value=0.930424	major_base=C	major_cov=55/41	major_frequency=6.154e-01	minor_base=T	minor_cov=27/33	new_cov=27/33	polymorphism_frequency=3.846e-01	polymorphism_score=176.4	prediction=polymorphism	ref_cov=55/41	total_cov=83/74
RA	285	.	NC_000913	566510	0	G	C	bias_e_value=1847300	bias_p_value=0.397983	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.2	fisher_strand_p_value=0.138217	frequency=3.871e-01	ks_quality_p_value=0.950342	major_base=G	major_cov=55/40	major_frequency=6.129e-01	minor_base=C	minor_cov=27/33	new_cov=27/33	polymorphism_frequency=3.871e-01	polymorphism_score=206.5	prediction=polymorphism	ref_cov=55/40	total_cov=83/73
RA	286	.	NC_000913	566513	0	C	T	bias_e_value=2602890	bias_p_value=0.560769	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=0.246364	frequency=3.896e-01	ks_quality_p_value=0.913681	major_base=C	major_cov=54/40	major_frequency=6.104e-01	minor_base=T	minor_cov=28/32	new_cov=28/32	polymorphism_frequency=3.896e-01	polymorphism_score=180.7	prediction=polymorphism	ref_cov=54/40	total_cov=83/73
RA	287	.	NC_000913	566519	0	T	C	bias_e_value=2386480	bias_p_value=0.514144	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.2	fisher_strand_p_value=0.195225	frequency=3.861e-01	ks_quality_p_value=1	major_base=T	major_cov=55/42	major_frequency=6.139e-01	minor_base=C	minor_cov=28/33	new_cov=28/33	polymorphism_frequency=3.861e-01	polymorphism_score=171.2	prediction=polymorphism	ref_cov=55/42	total_cov=83/75
RA	288	.	NC_000913	566522	0	C	A	bias_e_value=3981070	bias_p_value=0.857683	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.3	fisher_strand_p_value=0.516413	frequency=4.103e-01	ks_quality_p_value=1	major_base=C	major_cov=50/42	major_frequency=5.897e-01	minor_base=A	minor_cov=31/33	new_cov=31/33	polymorphism_frequency=4.103e-01	polymorphism_score=168.4	prediction=polymorphism	ref_cov=50/42	total_cov=81/75
RA	289	.	NC_000913	566528	0	A	G	bias_e_value=1931810	bias_p_value=0.41619	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.2	fisher_strand_p_value=0.246141	frequency=3.831e-01	ks_quality_p_value=0.570711	major_base=A	major_cov=52/43	major_frequency=6.169e-01	minor_base=G	minor_cov=26/33	new_cov=26/33	polymorphism_frequency=3.831e-01	polymorphism_score=168.5	prediction=polymorphism	ref_cov=52/43	total_cov=80/76
RA	290	.	NC_000913	566530	1	.	T	bias_e_value=1978710	bias_p_value=0.426293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.0	fisher_strand_p_value=0.184611	frequency=3.791e-01	ks_quality_p_value=0.789072	major_base=.	major_cov=52/43	major_frequency=6.209e-01	minor_base=T	minor_cov=25/33	new_cov=25/33	polymorphism_frequency=3.791e-01	polymorphism_score=305.0	prediction=polymorphism	ref_cov=52/43	total_cov=77/76
RA	291	.	NC_000913	566532	0	A	T	bias_e_value=3949370	bias_p_value=0.850854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.2	fisher_strand_p_value=0.506231	frequency=3.974e-01	ks_quality_p_value=1	major_base=A	major_cov=47/44	major_frequency=6.026e-01	minor_base=T	minor_cov=27/33	new_cov=27/33	polymorphism_frequency=3.974e-01	polymorphism_score=228.8	prediction=polymorphism	ref_cov=47/44	total_cov=76/77
RA	292	.	NC_000913	566535	0	T	.	bias_e_value=2083540	bias_p_value=0.44888	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.2	fisher_strand_p_value=0.250426	frequency=3.846e-01	ks_quality_p_value=0.629506	major_base=T	major_cov=53/43	major_frequency=6.154e-01	minor_base=.	minor_cov=27/33	new_cov=27/33	polymorphism_frequency=3.846e-01	polymorphism_score=267.3	prediction=polymorphism	ref_cov=53/43	total_cov=80/76
RA	293	.	NC_000913	566536	0	G	A	bias_e_value=2814340	bias_p_value=0.606324	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.3	fisher_strand_p_value=0.257105	frequency=3.949e-01	ks_quality_p_value=1	major_base=G	major_cov=52/43	major_frequency=6.051e-01	minor_base=A	minor_cov=28/34	new_cov=28/34	polymorphism_frequency=3.949e-01	polymorphism_score=176.2	prediction=polymorphism	ref_cov=52/43	total_cov=80/77
RA	294	.	NC_000913	566543	0	A	T	bias_e_value=3661950	bias_p_value=0.788933	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.7	fisher_strand_p_value=0.425321	frequency=3.951e-01	ks_quality_p_value=1	major_base=A	major_cov=54/44	major_frequency=6.049e-01	minor_base=T	minor_cov=31/33	new_cov=31/33	polymorphism_frequency=3.951e-01	polymorphism_score=249.3	prediction=polymorphism	ref_cov=54/44	total_cov=85/77
RA	295	.	NC_000913	566547	0	C	A	bias_e_value=3994240	bias_p_value=0.860521	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.7	fisher_strand_p_value=0.520733	frequency=4.037e-01	ks_quality_p_value=1	major_base=C	major_cov=53/43	major_frequency=5.963e-01	minor_base=A	minor_cov=32/33	new_cov=32/33	polymorphism_frequency=4.037e-01	polymorphism_score=180.0	prediction=polymorphism	ref_cov=53/43	total_cov=85/76
RA	296	.	NC_000913	566565	0	A	G	bias_e_value=3056640	bias_p_value=0.658525	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.2	fisher_strand_p_value=0.297791	frequency=4.560e-01	ks_quality_p_value=1	major_base=A	major_cov=56/43	major_frequency=5.440e-01	minor_base=G	minor_cov=40/43	new_cov=40/43	polymorphism_frequency=4.560e-01	polymorphism_score=241.5	prediction=polymorphism	ref_cov=56/43	total_cov=96/86
RA	297	.	NC_000913	566570	0	A	C	bias_e_value=3449140	bias_p_value=0.743085	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.6	fisher_strand_p_value=0.381906	frequency=4.492e-01	ks_quality_p_value=0.982647	major_base=A	major_cov=57/46	major_frequency=5.508e-01	minor_base=C	minor_cov=41/43	new_cov=41/43	polymorphism_frequency=4.492e-01	polymorphism_score=270.7	prediction=polymorphism	ref_cov=57/46	total_cov=98/89
RA	298	.	NC_000913	566597	0	T	C	bias_e_value=4640170	bias_p_value=0.999682	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.6	fisher_strand_p_value=1	frequency=4.639e-01	ks_quality_p_value=0.974874	major_base=T	major_cov=53/51	major_frequency=5.361e-01	minor_base=C	minor_cov=46/44	new_cov=46/44	polymorphism_frequency=4.639e-01	polymorphism_score=262.0	prediction=polymorphism	ref_cov=53/51	total_cov=99/95
RA	299	.	NC_000913	566651	0	T	C	bias_e_value=4378400	bias_p_value=0.943286	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.0	fisher_strand_p_value=0.688295	frequency=4.777e-01	ks_quality_p_value=0.991868	major_base=T	major_cov=56/61	major_frequency=5.223e-01	minor_base=C	minor_cov=55/52	new_cov=55/52	polymorphism_frequency=4.777e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/61	total_cov=111/114
RA	300	.	NC_000913	566728	0	G	T	bias_e_value=2190510	bias_p_value=0.471924	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.2	fisher_strand_p_value=0.171421	frequency=3.617e-01	ks_quality_p_value=0.99399	major_base=G	major_cov=59/61	major_frequency=6.383e-01	minor_base=T	minor_cov=41/27	new_cov=41/27	polymorphism_frequency=3.617e-01	polymorphism_score=184.1	prediction=polymorphism	ref_cov=59/61	total_cov=100/88
RA	301	.	NC_000913	566740	0	A	G	bias_e_value=2069440	bias_p_value=0.445842	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.8	fisher_strand_p_value=0.348592	frequency=3.370e-01	ks_quality_p_value=0.447529	major_base=A	major_cov=63/59	major_frequency=6.630e-01	minor_base=G	minor_cov=37/25	new_cov=37/25	polymorphism_frequency=3.370e-01	polymorphism_score=182.2	prediction=polymorphism	ref_cov=63/59	total_cov=100/84
RA	302	.	NC_000913	566742	0	A	C	bias_e_value=3341970	bias_p_value=0.719997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.2	fisher_strand_p_value=0.352446	frequency=3.459e-01	ks_quality_p_value=1	major_base=A	major_cov=62/59	major_frequency=6.541e-01	minor_base=C	minor_cov=38/26	new_cov=38/26	polymorphism_frequency=3.459e-01	polymorphism_score=187.6	prediction=polymorphism	ref_cov=62/59	total_cov=100/85
RA	303	.	NC_000913	566756	0	G	C	bias_e_value=4166230	bias_p_value=0.897575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.6	fisher_strand_p_value=0.635506	frequency=3.315e-01	ks_quality_p_value=0.9174	major_base=G	major_cov=63/58	major_frequency=6.685e-01	minor_base=C	minor_cov=34/26	new_cov=34/26	polymorphism_frequency=3.315e-01	polymorphism_score=203.4	prediction=polymorphism	ref_cov=63/58	total_cov=97/86
RA	304	.	NC_000913	566770	0	C	A	bias_e_value=4218920	bias_p_value=0.908927	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.6	fisher_strand_p_value=0.631264	frequency=3.022e-01	ks_quality_p_value=0.958073	major_base=C	major_cov=64/63	major_frequency=6.978e-01	minor_base=A	minor_cov=30/25	new_cov=30/25	polymorphism_frequency=3.022e-01	polymorphism_score=143.1	prediction=polymorphism	ref_cov=64/63	total_cov=95/88
RA	305	.	NC_000913	568052	0	T	C	bias_e_value=4641580	bias_p_value=0.999984	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.4	fisher_strand_p_value=1	frequency=3.125e-01	ks_quality_p_value=0.994334	major_base=T	major_cov=61/49	major_frequency=6.875e-01	minor_base=C	minor_cov=28/22	new_cov=28/22	polymorphism_frequency=3.125e-01	polymorphism_score=138.3	prediction=polymorphism	ref_cov=61/49	total_cov=90/72
RA	306	.	NC_000913	568067	0	G	A	bias_e_value=4466190	bias_p_value=0.962198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.1	fisher_strand_p_value=1	frequency=2.930e-01	ks_quality_p_value=0.73795	major_base=G	major_cov=57/54	major_frequency=7.070e-01	minor_base=A	minor_cov=23/23	new_cov=23/23	polymorphism_frequency=2.930e-01	polymorphism_score=132.9	prediction=polymorphism	ref_cov=57/54	total_cov=81/77
RA	307	.	NC_000913	568076	0	A	T	bias_e_value=4517070	bias_p_value=0.973159	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.3	fisher_strand_p_value=1	frequency=2.733e-01	ks_quality_p_value=0.777439	major_base=A	major_cov=59/58	major_frequency=7.267e-01	minor_base=T	minor_cov=22/22	new_cov=22/22	polymorphism_frequency=2.733e-01	polymorphism_score=164.8	prediction=polymorphism	ref_cov=59/58	total_cov=81/80
RA	308	.	NC_000913	568077	0	A	C	bias_e_value=4569340	bias_p_value=0.98442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.2	fisher_strand_p_value=1	frequency=2.733e-01	ks_quality_p_value=0.828752	major_base=A	major_cov=59/58	major_frequency=7.267e-01	minor_base=C	minor_cov=22/22	new_cov=22/22	polymorphism_frequency=2.733e-01	polymorphism_score=132.2	prediction=polymorphism	ref_cov=59/58	total_cov=81/80
RA	309	.	NC_000913	568079	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.9	fisher_strand_p_value=1	frequency=2.733e-01	ks_quality_p_value=0.999998	major_base=C	major_cov=59/58	major_frequency=7.267e-01	minor_base=T	minor_cov=22/22	new_cov=22/22	polymorphism_frequency=2.733e-01	polymorphism_score=122.4	prediction=polymorphism	ref_cov=59/58	total_cov=81/80
RA	310	.	NC_000913	568085	0	C	T	bias_e_value=4278570	bias_p_value=0.921778	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.9	fisher_strand_p_value=1	frequency=2.767e-01	ks_quality_p_value=0.63151	major_base=C	major_cov=57/58	major_frequency=7.233e-01	minor_base=T	minor_cov=22/22	new_cov=22/22	polymorphism_frequency=2.767e-01	polymorphism_score=125.3	prediction=polymorphism	ref_cov=57/58	total_cov=80/80
RA	311	.	NC_000913	568086	0	G	A	bias_e_value=4611510	bias_p_value=0.993506	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.7	fisher_strand_p_value=1	frequency=2.750e-01	ks_quality_p_value=0.888221	major_base=G	major_cov=58/58	major_frequency=7.250e-01	minor_base=A	minor_cov=22/22	new_cov=22/22	polymorphism_frequency=2.750e-01	polymorphism_score=125.4	prediction=polymorphism	ref_cov=58/58	total_cov=80/80
RA	312	.	NC_000913	568088	0	T	C	bias_e_value=4380770	bias_p_value=0.943795	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.2	fisher_strand_p_value=0.859615	frequency=2.704e-01	ks_quality_p_value=0.795746	major_base=T	major_cov=59/57	major_frequency=7.296e-01	minor_base=C	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=2.704e-01	polymorphism_score=117.3	prediction=polymorphism	ref_cov=59/57	total_cov=80/80
RA	313	.	NC_000913	568091	0	T	A	bias_e_value=4479630	bias_p_value=0.965095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.5	fisher_strand_p_value=1	frequency=2.767e-01	ks_quality_p_value=0.747695	major_base=T	major_cov=57/58	major_frequency=7.233e-01	minor_base=A	minor_cov=22/22	new_cov=22/22	polymorphism_frequency=2.767e-01	polymorphism_score=163.3	prediction=polymorphism	ref_cov=57/58	total_cov=79/80
RA	314	.	NC_000913	578118	0	A	C	consensus_score=12.3	deleted=1	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	315	.	NC_000913	578130	0	A	C	consensus_score=12.3	deleted=1	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	316	.	NC_000913	578140	0	A	G	consensus_score=12.2	deleted=1	frequency=1	major_base=G	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	317	.	NC_000913	578158	0	A	T	consensus_score=12.3	deleted=1	frequency=1	major_base=T	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	318	.	NC_000913	578172	0	G	T	consensus_score=12.3	deleted=1	frequency=1	major_base=T	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	319	.	NC_000913	578175	0	C	T	consensus_score=12.3	deleted=1	frequency=1	major_base=T	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	320	.	NC_000913	578196	0	A	C	consensus_score=12.3	deleted=1	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	321	.	NC_000913	578199	0	C	T	consensus_score=12.3	deleted=1	frequency=1	major_base=T	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	322	.	NC_000913	578200	0	G	A	consensus_score=12.1	deleted=1	frequency=1	major_base=A	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	323	.	NC_000913	578210	0	T	C	consensus_score=20.5	deleted=1	frequency=1	major_base=C	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	324	.	NC_000913	578244	0	A	G	consensus_score=48.6	deleted=1	frequency=1	major_base=G	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	325	.	NC_000913	578331	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=175.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/51	major_frequency=9.718e-01	minor_base=G	minor_cov=0/2	new_cov=18/51	polymorphism_frequency=9.718e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=18/53
RA	326	.	NC_000913	578427	0	G	C	consensus_score=289.0	frequency=1	major_base=C	major_cov=29/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/58
RA	327	.	NC_000913	578571	0	C	T	consensus_score=385.8	frequency=1	major_base=T	major_cov=68/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/44
RA	328	.	NC_000913	578574	0	A	C	consensus_score=407.3	frequency=1	major_base=C	major_cov=68/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/44
RA	329	.	NC_000913	578605	0	T	G	consensus_score=443.8	frequency=1	major_base=G	major_cov=75/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/46
RA	330	.	NC_000913	578729	0	A	G	bias_e_value=564450	bias_p_value=0.121605	consensus_score=452.6	fisher_strand_p_value=0.0261959	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=75/48	major_frequency=9.685e-01	minor_base=T	minor_cov=0/4	new_cov=75/48	polymorphism_frequency=9.685e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/52
RA	331	.	NC_000913	578809	0	T	C	consensus_score=454.2	frequency=1	major_base=C	major_cov=59/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/65
RA	332	.	NC_000913	578811	0	T	G	consensus_score=454.5	frequency=1	major_base=G	major_cov=59/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/65
RA	333	.	NC_000913	578831	0	T	C	consensus_score=472.4	frequency=1	major_base=C	major_cov=62/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/69
RA	334	.	NC_000913	579004	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=391.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/75	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=42/75	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/76
RA	335	.	NC_000913	579099	0	A	.	consensus_score=527.3	frequency=1	major_base=.	major_cov=47/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/64
RA	336	.	NC_000913	579127	0	T	C	consensus_score=357.9	frequency=1	major_base=C	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	337	.	NC_000913	579134	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=346.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/45	major_frequency=9.896e-01	minor_base=T	minor_cov=1/0	new_cov=50/45	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/45
RA	338	.	NC_000913	579146	0	A	G	bias_e_value=3566650	bias_p_value=0.7684	consensus_score=352.9	fisher_strand_p_value=0.402062	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=58/38	major_frequency=9.897e-01	minor_base=A	minor_cov=0/1	new_cov=58/38	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/39
RA	339	.	NC_000913	579271	0	G	A	bias_e_value=4496880	bias_p_value=0.968811	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.78686	frequency=5.043e-01	ks_quality_p_value=0.966972	major_base=A	major_cov=71/45	major_frequency=5.043e-01	minor_base=G	minor_cov=72/42	new_cov=71/45	polymorphism_frequency=5.043e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=72/42	total_cov=144/87
RA	340	.	NC_000913	579285	0	T	C	bias_e_value=218881	bias_p_value=0.0471558	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.3	fisher_strand_p_value=0.685668	frequency=5.481e-01	ks_quality_p_value=0.0118276	major_base=C	major_cov=86/45	major_frequency=5.481e-01	minor_base=T	minor_cov=68/40	new_cov=86/45	polymorphism_frequency=5.481e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=68/40	total_cov=155/85
RA	341	.	NC_000913	579385	0	A	G	bias_e_value=895399	bias_p_value=0.192905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.8	fisher_strand_p_value=0.0477206	frequency=5.284e-01	ks_quality_p_value=1	major_base=G	major_cov=96/62	major_frequency=5.284e-01	minor_base=A	minor_cov=69/72	new_cov=96/62	polymorphism_frequency=5.284e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=69/72	total_cov=165/135
RA	342	.	NC_000913	579457	0	A	G	bias_e_value=2518270	bias_p_value=0.542538	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.5	fisher_strand_p_value=0.484357	frequency=5.372e-01	ks_quality_p_value=0.439948	major_base=G	major_cov=83/76	major_frequency=5.372e-01	minor_base=A	minor_cov=65/72	new_cov=83/76	polymorphism_frequency=5.372e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/72	total_cov=150/148
RA	343	.	NC_000913	579502	0	A	G	bias_e_value=4410530	bias_p_value=0.950207	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.1	fisher_strand_p_value=1	frequency=5.079e-01	ks_quality_p_value=0.701503	major_base=G	major_cov=79/82	major_frequency=5.079e-01	minor_base=A	minor_cov=76/80	new_cov=79/82	polymorphism_frequency=5.079e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/80	total_cov=155/162
RA	344	.	NC_000913	579540	0	T	C	bias_e_value=3374330	bias_p_value=0.726968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.3	fisher_strand_p_value=0.565605	frequency=5.329e-01	ks_quality_p_value=0.635057	major_base=C	major_cov=75/87	major_frequency=5.329e-01	minor_base=T	minor_cov=71/71	new_cov=75/87	polymorphism_frequency=5.329e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=71/71	total_cov=147/158
RA	345	.	NC_000913	579651	0	C	T	bias_e_value=2954130	bias_p_value=0.636439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.8	fisher_strand_p_value=0.280007	frequency=4.946e-01	ks_quality_p_value=1	major_base=C	major_cov=73/67	major_frequency=5.054e-01	minor_base=T	minor_cov=62/75	new_cov=62/75	polymorphism_frequency=4.946e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=73/67	total_cov=136/144
RA	346	.	NC_000913	579671	0	T	C	bias_e_value=1075050	bias_p_value=0.23161	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.8	fisher_strand_p_value=0.061	frequency=4.864e-01	ks_quality_p_value=1	major_base=T	major_cov=71/61	major_frequency=5.136e-01	minor_base=C	minor_cov=52/73	new_cov=52/73	polymorphism_frequency=4.864e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=71/61	total_cov=123/134
RA	347	.	NC_000913	579717	0	A	C	bias_e_value=3835110	bias_p_value=0.826238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.8	fisher_strand_p_value=0.471829	frequency=4.610e-01	ks_quality_p_value=1	major_base=A	major_cov=70/82	major_frequency=5.390e-01	minor_base=C	minor_cov=54/76	new_cov=54/76	polymorphism_frequency=4.610e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=70/82	total_cov=124/159
RA	348	.	NC_000913	579811	0	C	T	bias_e_value=4316460	bias_p_value=0.929941	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.0	fisher_strand_p_value=0.797634	frequency=5.000e-01	ks_quality_p_value=0.814714	major_base=T	major_cov=59/63	major_frequency=5.000e-01	minor_base=C	minor_cov=56/66	new_cov=59/63	polymorphism_frequency=5.000e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/66	total_cov=115/129
RA	349	.	NC_000913	580020	0	G	A	bias_e_value=4417330	bias_p_value=0.951672	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.4	fisher_strand_p_value=1	frequency=4.975e-01	ks_quality_p_value=0.70567	major_base=G	major_cov=49/51	major_frequency=5.025e-01	minor_base=A	minor_cov=49/50	new_cov=49/50	polymorphism_frequency=4.975e-01	polymorphism_score=314.2	prediction=polymorphism	ref_cov=49/51	total_cov=98/102
RA	350	.	NC_000913	580115	0	C	T	bias_e_value=1885120	bias_p_value=0.406131	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.135398	frequency=5.140e-01	ks_quality_p_value=1	major_base=T	major_cov=55/37	major_frequency=5.140e-01	minor_base=C	minor_cov=42/45	new_cov=55/37	polymorphism_frequency=5.140e-01	polymorphism_score=259.3	prediction=polymorphism	ref_cov=42/45	total_cov=97/82
RA	351	.	NC_000913	580119	0	A	G	bias_e_value=2223160	bias_p_value=0.478958	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.5	fisher_strand_p_value=0.180758	frequency=5.083e-01	ks_quality_p_value=0.96478	major_base=G	major_cov=55/37	major_frequency=5.083e-01	minor_base=A	minor_cov=44/45	new_cov=55/37	polymorphism_frequency=5.083e-01	polymorphism_score=282.5	prediction=polymorphism	ref_cov=44/45	total_cov=99/82
RA	352	.	NC_000913	580120	0	C	T	bias_e_value=2266780	bias_p_value=0.488356	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.5	fisher_strand_p_value=0.17982	frequency=5.028e-01	ks_quality_p_value=1	major_base=T	major_cov=55/36	major_frequency=5.028e-01	minor_base=C	minor_cov=45/45	new_cov=55/36	polymorphism_frequency=5.028e-01	polymorphism_score=259.9	prediction=polymorphism	ref_cov=45/45	total_cov=100/81
RA	353	.	NC_000913	580302	0	C	T	bias_e_value=4590660	bias_p_value=0.989015	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.5	fisher_strand_p_value=0.887519	frequency=5.051e-01	ks_quality_p_value=0.963906	major_base=T	major_cov=49/50	major_frequency=5.051e-01	minor_base=C	minor_cov=47/50	new_cov=49/50	polymorphism_frequency=5.051e-01	polymorphism_score=307.6	prediction=polymorphism	ref_cov=47/50	total_cov=96/100
RA	354	.	NC_000913	580437	0	A	C	bias_e_value=1721400	bias_p_value=0.370859	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.0	fisher_strand_p_value=0.171489	frequency=3.291e-01	ks_quality_p_value=0.68996	major_base=A	major_cov=50/56	major_frequency=6.709e-01	minor_base=C	minor_cov=18/34	new_cov=18/34	polymorphism_frequency=3.291e-01	polymorphism_score=155.7	prediction=polymorphism	ref_cov=50/56	total_cov=68/90
RA	355	.	NC_000913	580830	0	T	A	bias_e_value=4409870	bias_p_value=0.950064	consensus_reject=FREQUENCY_CUTOFF	consensus_score=336.0	fisher_strand_p_value=0.701101	frequency=2.774e-01	ks_quality_p_value=1	major_base=T	major_cov=42/57	major_frequency=7.226e-01	minor_base=A	minor_cov=18/20	new_cov=18/20	polymorphism_frequency=2.774e-01	polymorphism_score=140.8	prediction=polymorphism	ref_cov=42/57	total_cov=60/78
RA	356	.	NC_000913	580831	0	G	A	bias_e_value=4419420	bias_p_value=0.952123	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.1	fisher_strand_p_value=0.706966	frequency=2.826e-01	ks_quality_p_value=1	major_base=G	major_cov=42/57	major_frequency=7.174e-01	minor_base=A	minor_cov=18/21	new_cov=18/21	polymorphism_frequency=2.826e-01	polymorphism_score=106.3	prediction=polymorphism	ref_cov=42/57	total_cov=60/78
RA	357	.	NC_000913	581042	0	T	G	bias_e_value=2694160	bias_p_value=0.580431	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.5	fisher_strand_p_value=0.238548	frequency=4.296e-01	ks_quality_p_value=1	major_base=T	major_cov=38/43	major_frequency=5.704e-01	minor_base=G	minor_cov=35/26	new_cov=35/26	polymorphism_frequency=4.296e-01	polymorphism_score=194.0	prediction=polymorphism	ref_cov=38/43	total_cov=73/69
RA	358	.	NC_000913	581056	0	A	G	bias_e_value=3408690	bias_p_value=0.73437	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.4	fisher_strand_p_value=0.394985	frequency=3.944e-01	ks_quality_p_value=0.927866	major_base=A	major_cov=41/45	major_frequency=6.056e-01	minor_base=G	minor_cov=31/25	new_cov=31/25	polymorphism_frequency=3.944e-01	polymorphism_score=162.7	prediction=polymorphism	ref_cov=41/45	total_cov=72/70
RA	359	.	NC_000913	581073	0	G	A	bias_e_value=4175440	bias_p_value=0.89956	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.7	fisher_strand_p_value=0.593943	frequency=3.817e-01	ks_quality_p_value=0.987827	major_base=G	major_cov=38/43	major_frequency=6.183e-01	minor_base=A	minor_cov=26/24	new_cov=26/24	polymorphism_frequency=3.817e-01	polymorphism_score=148.6	prediction=polymorphism	ref_cov=38/43	total_cov=64/68
RA	360	.	NC_000913	581118	0	T	C	bias_e_value=1901660	bias_p_value=0.409695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.6	fisher_strand_p_value=0.138485	frequency=2.740e-01	ks_quality_p_value=0.990623	major_base=T	major_cov=48/58	major_frequency=7.260e-01	minor_base=C	minor_cov=24/16	new_cov=24/16	polymorphism_frequency=2.740e-01	polymorphism_score=105.6	prediction=polymorphism	ref_cov=48/58	total_cov=74/75
RA	361	.	NC_000913	581127	0	G	A	bias_e_value=1206890	bias_p_value=0.260013	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.9	fisher_strand_p_value=0.071459	frequency=4.631e-01	ks_quality_p_value=1	major_base=G	major_cov=46/34	major_frequency=5.369e-01	minor_base=A	minor_cov=29/40	new_cov=29/40	polymorphism_frequency=4.631e-01	polymorphism_score=209.8	prediction=polymorphism	ref_cov=46/34	total_cov=75/74
RA	362	.	NC_000913	581133	0	A	G	bias_e_value=2572560	bias_p_value=0.554233	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.1	fisher_strand_p_value=0.220744	frequency=3.032e-01	ks_quality_p_value=1	major_base=A	major_cov=47/61	major_frequency=6.968e-01	minor_base=G	minor_cov=26/21	new_cov=26/21	polymorphism_frequency=3.032e-01	polymorphism_score=122.4	prediction=polymorphism	ref_cov=47/61	total_cov=73/82
RA	363	.	NC_000913	581185	0	C	T	bias_e_value=3543990	bias_p_value=0.76352	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.1	fisher_strand_p_value=0.396744	frequency=3.067e-01	ks_quality_p_value=1	major_base=C	major_cov=46/67	major_frequency=6.933e-01	minor_base=T	minor_cov=24/26	new_cov=24/26	polymorphism_frequency=3.067e-01	polymorphism_score=140.9	prediction=polymorphism	ref_cov=46/67	total_cov=70/93
RA	364	.	NC_000913	581227	0	A	C	bias_e_value=4087480	bias_p_value=0.880609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.9	fisher_strand_p_value=0.577207	frequency=3.790e-01	ks_quality_p_value=0.9581	major_base=A	major_cov=36/41	major_frequency=6.210e-01	minor_base=C	minor_cov=19/28	new_cov=19/28	polymorphism_frequency=3.790e-01	polymorphism_score=144.4	prediction=polymorphism	ref_cov=36/41	total_cov=59/94
RA	365	.	NC_000913	581229	0	C	T	bias_e_value=127647	bias_p_value=0.0275004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.1	fisher_strand_p_value=0.00483684	frequency=2.014e-01	ks_quality_p_value=0.880258	major_base=C	major_cov=48/67	major_frequency=7.986e-01	minor_base=T	minor_cov=4/25	new_cov=4/25	polymorphism_frequency=2.014e-01	polymorphism_score=76.8	prediction=polymorphism	ref_cov=48/67	total_cov=52/92
RA	366	.	NC_000913	581232	0	C	T	bias_e_value=205021	bias_p_value=0.0441698	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.2	fisher_strand_p_value=0.00830126	frequency=2.057e-01	ks_quality_p_value=0.902822	major_base=C	major_cov=45/67	major_frequency=7.943e-01	minor_base=T	minor_cov=4/25	new_cov=4/25	polymorphism_frequency=2.057e-01	polymorphism_score=75.7	prediction=polymorphism	ref_cov=45/67	total_cov=50/92
RA	367	.	NC_000913	581241	0	G	T	bias_e_value=191462	bias_p_value=0.0412488	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.6	fisher_strand_p_value=0.00690256	frequency=2.038e-01	ks_quality_p_value=1	major_base=G	major_cov=53/72	major_frequency=7.962e-01	minor_base=T	minor_cov=5/27	new_cov=5/27	polymorphism_frequency=2.038e-01	polymorphism_score=67.4	prediction=polymorphism	ref_cov=53/72	total_cov=58/99
RA	368	.	NC_000913	581250	0	T	C	bias_e_value=745807	bias_p_value=0.160677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.7	fisher_strand_p_value=0.0376748	frequency=2.381e-01	ks_quality_p_value=0.995757	major_base=T	major_cov=42/70	major_frequency=7.619e-01	minor_base=C	minor_cov=6/29	new_cov=6/29	polymorphism_frequency=2.381e-01	polymorphism_score=92.8	prediction=polymorphism	ref_cov=42/70	total_cov=48/99
RA	369	.	NC_000913	581253	0	T	C	bias_e_value=746682	bias_p_value=0.160866	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.1	fisher_strand_p_value=0.0376748	frequency=2.381e-01	ks_quality_p_value=0.997283	major_base=T	major_cov=42/70	major_frequency=7.619e-01	minor_base=C	minor_cov=6/29	new_cov=6/29	polymorphism_frequency=2.381e-01	polymorphism_score=87.6	prediction=polymorphism	ref_cov=42/70	total_cov=48/99
RA	370	.	NC_000913	581259	0	A	G	bias_e_value=558288	bias_p_value=0.120278	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.5	fisher_strand_p_value=0.0258507	frequency=2.384e-01	ks_quality_p_value=0.99928	major_base=A	major_cov=42/73	major_frequency=7.616e-01	minor_base=G	minor_cov=6/30	new_cov=6/30	polymorphism_frequency=2.384e-01	polymorphism_score=94.3	prediction=polymorphism	ref_cov=42/73	total_cov=48/103
RA	371	.	NC_000913	581275	0	G	A	bias_e_value=295742	bias_p_value=0.0637149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.1	fisher_strand_p_value=0.0166178	frequency=2.532e-01	ks_quality_p_value=0.703676	major_base=G	major_cov=42/76	major_frequency=7.468e-01	minor_base=A	minor_cov=6/34	new_cov=6/34	polymorphism_frequency=2.532e-01	polymorphism_score=111.9	prediction=polymorphism	ref_cov=42/76	total_cov=48/110
RA	372	.	NC_000913	581286	0	G	C	bias_e_value=397839	bias_p_value=0.0857106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.8	fisher_strand_p_value=0.0265858	frequency=2.532e-01	ks_quality_p_value=0.634306	major_base=G	major_cov=41/77	major_frequency=7.468e-01	minor_base=C	minor_cov=6/34	new_cov=6/34	polymorphism_frequency=2.532e-01	polymorphism_score=119.3	prediction=polymorphism	ref_cov=41/77	total_cov=47/114
RA	373	.	NC_000913	581289	0	A	G	bias_e_value=799800	bias_p_value=0.172309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.1	fisher_strand_p_value=0.041109	frequency=2.390e-01	ks_quality_p_value=1	major_base=A	major_cov=41/80	major_frequency=7.610e-01	minor_base=G	minor_cov=6/32	new_cov=6/32	polymorphism_frequency=2.390e-01	polymorphism_score=78.1	prediction=polymorphism	ref_cov=41/80	total_cov=47/114
RA	374	.	NC_000913	581290	0	C	A	bias_e_value=382693	bias_p_value=0.0824475	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.2	fisher_strand_p_value=0.017459	frequency=2.424e-01	ks_quality_p_value=0.920379	major_base=C	major_cov=44/81	major_frequency=7.576e-01	minor_base=A	minor_cov=6/34	new_cov=6/34	polymorphism_frequency=2.424e-01	polymorphism_score=103.5	prediction=polymorphism	ref_cov=44/81	total_cov=50/115
RA	375	.	NC_000913	581291	0	G	A	bias_e_value=401870	bias_p_value=0.0865792	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.7	fisher_strand_p_value=0.0170766	frequency=2.454e-01	ks_quality_p_value=1	major_base=G	major_cov=44/79	major_frequency=7.546e-01	minor_base=A	minor_cov=6/34	new_cov=6/34	polymorphism_frequency=2.454e-01	polymorphism_score=82.3	prediction=polymorphism	ref_cov=44/79	total_cov=50/115
RA	376	.	NC_000913	581295	0	T	C	bias_e_value=528623	bias_p_value=0.113887	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.0	fisher_strand_p_value=0.0276581	frequency=2.410e-01	ks_quality_p_value=0.871366	major_base=T	major_cov=43/83	major_frequency=7.590e-01	minor_base=C	minor_cov=6/34	new_cov=6/34	polymorphism_frequency=2.410e-01	polymorphism_score=109.5	prediction=polymorphism	ref_cov=43/83	total_cov=49/117
RA	377	.	NC_000913	581301	0	C	T	bias_e_value=588983	bias_p_value=0.126891	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.5	fisher_strand_p_value=0.0276581	frequency=2.410e-01	ks_quality_p_value=1	major_base=C	major_cov=43/83	major_frequency=7.590e-01	minor_base=T	minor_cov=6/34	new_cov=6/34	polymorphism_frequency=2.410e-01	polymorphism_score=106.5	prediction=polymorphism	ref_cov=43/83	total_cov=49/117
RA	378	.	NC_000913	581322	0	C	T	bias_e_value=3118190	bias_p_value=0.671785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.1	fisher_strand_p_value=0.415022	frequency=3.229e-01	ks_quality_p_value=0.744315	major_base=C	major_cov=47/83	major_frequency=6.771e-01	minor_base=T	minor_cov=18/44	new_cov=18/44	polymorphism_frequency=3.229e-01	polymorphism_score=182.2	prediction=polymorphism	ref_cov=47/83	total_cov=65/127
RA	379	.	NC_000913	581335	0	C	A	bias_e_value=2703390	bias_p_value=0.58242	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.5	fisher_strand_p_value=0.269631	frequency=3.283e-01	ks_quality_p_value=0.889875	major_base=C	major_cov=50/83	major_frequency=6.717e-01	minor_base=A	minor_cov=19/46	new_cov=19/46	polymorphism_frequency=3.283e-01	polymorphism_score=182.0	prediction=polymorphism	ref_cov=50/83	total_cov=69/129
RA	380	.	NC_000913	581337	0	G	A	bias_e_value=2846220	bias_p_value=0.613191	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.1	fisher_strand_p_value=0.267632	frequency=3.333e-01	ks_quality_p_value=0.979696	major_base=G	major_cov=49/81	major_frequency=6.667e-01	minor_base=A	minor_cov=19/46	new_cov=19/46	polymorphism_frequency=3.333e-01	polymorphism_score=194.1	prediction=polymorphism	ref_cov=49/81	total_cov=68/127
RA	381	.	NC_000913	581380	0	C	G	bias_e_value=4492150	bias_p_value=0.967791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=360.2	fisher_strand_p_value=0.757172	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=55/92	major_frequency=7.000e-01	minor_base=G	minor_cov=22/41	new_cov=22/41	polymorphism_frequency=3.000e-01	polymorphism_score=192.6	prediction=polymorphism	ref_cov=55/92	total_cov=79/135
RA	382	.	NC_000913	581381	0	A	G	bias_e_value=4107520	bias_p_value=0.884925	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.4	fisher_strand_p_value=0.876138	frequency=3.033e-01	ks_quality_p_value=0.639616	major_base=A	major_cov=54/93	major_frequency=6.967e-01	minor_base=G	minor_cov=22/42	new_cov=22/42	polymorphism_frequency=3.033e-01	polymorphism_score=185.2	prediction=polymorphism	ref_cov=54/93	total_cov=77/135
RA	383	.	NC_000913	581388	0	G	A	bias_e_value=2659160	bias_p_value=0.57289	consensus_reject=FREQUENCY_CUTOFF	consensus_score=358.6	fisher_strand_p_value=0.374015	frequency=2.270e-01	ks_quality_p_value=0.623841	major_base=G	major_cov=56/87	major_frequency=7.730e-01	minor_base=A	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.270e-01	polymorphism_score=114.9	prediction=polymorphism	ref_cov=56/87	total_cov=76/111
RA	384	.	NC_000913	581392	0	T	C	bias_e_value=1872480	bias_p_value=0.403409	consensus_reject=FREQUENCY_CUTOFF	consensus_score=361.7	fisher_strand_p_value=0.208394	frequency=2.295e-01	ks_quality_p_value=0.643203	major_base=T	major_cov=51/90	major_frequency=7.705e-01	minor_base=C	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.295e-01	polymorphism_score=114.4	prediction=polymorphism	ref_cov=51/90	total_cov=71/112
RA	385	.	NC_000913	581394	0	T	C	bias_e_value=1311920	bias_p_value=0.28264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=371.4	fisher_strand_p_value=0.148917	frequency=2.240e-01	ks_quality_p_value=0.538759	major_base=T	major_cov=51/91	major_frequency=7.760e-01	minor_base=C	minor_cov=20/21	new_cov=20/21	polymorphism_frequency=2.240e-01	polymorphism_score=112.1	prediction=polymorphism	ref_cov=51/91	total_cov=71/112
RA	386	.	NC_000913	581397	0	T	C	bias_e_value=2484320	bias_p_value=0.535224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=379.8	fisher_strand_p_value=0.208394	frequency=2.295e-01	ks_quality_p_value=1	major_base=T	major_cov=51/90	major_frequency=7.705e-01	minor_base=C	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.295e-01	polymorphism_score=109.6	prediction=polymorphism	ref_cov=51/90	total_cov=71/112
RA	387	.	NC_000913	581398	0	C	G	bias_e_value=2491940	bias_p_value=0.536865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=409.2	fisher_strand_p_value=0.210134	frequency=2.308e-01	ks_quality_p_value=0.996709	major_base=C	major_cov=51/89	major_frequency=7.692e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.308e-01	polymorphism_score=134.4	prediction=polymorphism	ref_cov=51/89	total_cov=71/112
RA	388	.	NC_000913	581404	0	C	G	bias_e_value=2041370	bias_p_value=0.439794	consensus_reject=FREQUENCY_CUTOFF	consensus_score=405.6	fisher_strand_p_value=0.152768	frequency=2.320e-01	ks_quality_p_value=1	major_base=C	major_cov=49/90	major_frequency=7.680e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.320e-01	polymorphism_score=130.0	prediction=polymorphism	ref_cov=49/90	total_cov=69/112
RA	389	.	NC_000913	581407	0	G	T	bias_e_value=1945190	bias_p_value=0.419073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=387.4	fisher_strand_p_value=0.152768	frequency=2.320e-01	ks_quality_p_value=0.929178	major_base=G	major_cov=49/90	major_frequency=7.680e-01	minor_base=T	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.320e-01	polymorphism_score=104.5	prediction=polymorphism	ref_cov=49/90	total_cov=69/112
RA	390	.	NC_000913	581410	0	T	A	bias_e_value=1990230	bias_p_value=0.428776	consensus_reject=FREQUENCY_CUTOFF	consensus_score=441.7	fisher_strand_p_value=0.146963	frequency=2.320e-01	ks_quality_p_value=1	major_base=T	major_cov=48/91	major_frequency=7.680e-01	minor_base=A	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.320e-01	polymorphism_score=151.7	prediction=polymorphism	ref_cov=48/91	total_cov=68/114
RA	391	.	NC_000913	581412	0	G	T	bias_e_value=1972820	bias_p_value=0.425025	consensus_reject=FREQUENCY_CUTOFF	consensus_score=392.9	fisher_strand_p_value=0.146963	frequency=2.320e-01	ks_quality_p_value=0.986734	major_base=G	major_cov=48/91	major_frequency=7.680e-01	minor_base=T	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.320e-01	polymorphism_score=101.8	prediction=polymorphism	ref_cov=48/91	total_cov=68/114
RA	392	.	NC_000913	581413	0	C	T	bias_e_value=1719230	bias_p_value=0.370392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=358.0	fisher_strand_p_value=0.145844	frequency=2.308e-01	ks_quality_p_value=0.809783	major_base=C	major_cov=48/92	major_frequency=7.692e-01	minor_base=T	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.308e-01	polymorphism_score=117.9	prediction=polymorphism	ref_cov=48/92	total_cov=68/114
RA	393	.	NC_000913	581416	0	A	G	bias_e_value=1634170	bias_p_value=0.352066	consensus_reject=FREQUENCY_CUTOFF	consensus_score=353.3	fisher_strand_p_value=0.143143	frequency=2.360e-01	ks_quality_p_value=0.766141	major_base=A	major_cov=46/90	major_frequency=7.640e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.360e-01	polymorphism_score=114.6	prediction=polymorphism	ref_cov=46/90	total_cov=66/112
RA	394	.	NC_000913	581421	0	T	A	bias_e_value=2956260	bias_p_value=0.636898	consensus_reject=FREQUENCY_CUTOFF	consensus_score=456.1	fisher_strand_p_value=0.281259	frequency=2.270e-01	ks_quality_p_value=0.99683	major_base=T	major_cov=53/90	major_frequency=7.730e-01	minor_base=A	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.270e-01	polymorphism_score=150.4	prediction=polymorphism	ref_cov=53/90	total_cov=74/112
RA	395	.	NC_000913	581423	0	A	C	bias_e_value=2475770	bias_p_value=0.533382	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.6	fisher_strand_p_value=0.213437	frequency=2.312e-01	ks_quality_p_value=0.97088	major_base=A	major_cov=53/90	major_frequency=7.688e-01	minor_base=C	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=2.312e-01	polymorphism_score=121.8	prediction=polymorphism	ref_cov=53/90	total_cov=74/112
RA	396	.	NC_000913	581425	0	G	A	bias_e_value=2969850	bias_p_value=0.639826	consensus_reject=FREQUENCY_CUTOFF	consensus_score=378.2	fisher_strand_p_value=0.286336	frequency=2.283e-01	ks_quality_p_value=0.987223	major_base=G	major_cov=54/88	major_frequency=7.717e-01	minor_base=A	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.283e-01	polymorphism_score=114.8	prediction=polymorphism	ref_cov=54/88	total_cov=74/112
RA	397	.	NC_000913	581428	0	G	T	bias_e_value=3845920	bias_p_value=0.828567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=353.1	fisher_strand_p_value=0.479049	frequency=2.428e-01	ks_quality_p_value=0.99143	major_base=G	major_cov=54/77	major_frequency=7.572e-01	minor_base=T	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.428e-01	polymorphism_score=100.4	prediction=polymorphism	ref_cov=54/77	total_cov=74/99
RA	398	.	NC_000913	581434	0	A	G	bias_e_value=4441800	bias_p_value=0.956945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.2	fisher_strand_p_value=0.721288	frequency=2.545e-01	ks_quality_p_value=1	major_base=A	major_cov=54/69	major_frequency=7.455e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.545e-01	polymorphism_score=107.6	prediction=polymorphism	ref_cov=54/69	total_cov=74/91
RA	399	.	NC_000913	581437	0	G	A	bias_e_value=4251800	bias_p_value=0.916011	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.2	fisher_strand_p_value=0.721288	frequency=2.545e-01	ks_quality_p_value=0.858498	major_base=G	major_cov=54/69	major_frequency=7.455e-01	minor_base=A	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.545e-01	polymorphism_score=118.5	prediction=polymorphism	ref_cov=54/69	total_cov=74/92
RA	400	.	NC_000913	581440	0	C	G	bias_e_value=4401280	bias_p_value=0.948214	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.0	fisher_strand_p_value=0.857448	frequency=2.577e-01	ks_quality_p_value=0.811647	major_base=C	major_cov=54/67	major_frequency=7.423e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.577e-01	polymorphism_score=134.3	prediction=polymorphism	ref_cov=54/67	total_cov=74/89
RA	401	.	NC_000913	581443	0	C	G	bias_e_value=3991420	bias_p_value=0.859915	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.3	fisher_strand_p_value=0.721683	frequency=2.593e-01	ks_quality_p_value=0.720269	major_base=C	major_cov=53/67	major_frequency=7.407e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.593e-01	polymorphism_score=133.4	prediction=polymorphism	ref_cov=53/67	total_cov=74/89
RA	402	.	NC_000913	581455	0	G	A	bias_e_value=4572300	bias_p_value=0.985059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.3	fisher_strand_p_value=0.859652	frequency=2.654e-01	ks_quality_p_value=0.968056	major_base=G	major_cov=58/61	major_frequency=7.346e-01	minor_base=A	minor_cov=20/23	new_cov=20/23	polymorphism_frequency=2.654e-01	polymorphism_score=117.8	prediction=polymorphism	ref_cov=58/61	total_cov=78/85
RA	403	.	NC_000913	581458	0	T	C	bias_e_value=4588550	bias_p_value=0.988559	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.4	fisher_strand_p_value=1	frequency=2.577e-01	ks_quality_p_value=0.852597	major_base=T	major_cov=58/63	major_frequency=7.423e-01	minor_base=C	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.577e-01	polymorphism_score=116.3	prediction=polymorphism	ref_cov=58/63	total_cov=78/85
RA	404	.	NC_000913	581460	0	C	A	bias_e_value=4309840	bias_p_value=0.928515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.2	fisher_strand_p_value=1	frequency=2.577e-01	ks_quality_p_value=0.646553	major_base=C	major_cov=58/63	major_frequency=7.423e-01	minor_base=A	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.577e-01	polymorphism_score=107.6	prediction=polymorphism	ref_cov=58/63	total_cov=79/85
RA	405	.	NC_000913	581476	0	G	C	bias_e_value=4096590	bias_p_value=0.882571	consensus_reject=FREQUENCY_CUTOFF	consensus_score=282.8	fisher_strand_p_value=0.857582	frequency=2.692e-01	ks_quality_p_value=0.648744	major_base=G	major_cov=57/57	major_frequency=7.308e-01	minor_base=C	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.692e-01	polymorphism_score=124.2	prediction=polymorphism	ref_cov=57/57	total_cov=77/81
RA	406	.	NC_000913	581482	0	A	G	bias_e_value=4640600	bias_p_value=0.999774	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.8	fisher_strand_p_value=1	frequency=2.564e-01	ks_quality_p_value=0.97883	major_base=A	major_cov=57/59	major_frequency=7.436e-01	minor_base=G	minor_cov=19/21	new_cov=19/21	polymorphism_frequency=2.564e-01	polymorphism_score=106.3	prediction=polymorphism	ref_cov=57/59	total_cov=76/80
RA	407	.	NC_000913	581485	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.3	fisher_strand_p_value=1	frequency=2.614e-01	ks_quality_p_value=1	major_base=C	major_cov=55/58	major_frequency=7.386e-01	minor_base=G	minor_cov=19/21	new_cov=19/21	polymorphism_frequency=2.614e-01	polymorphism_score=126.2	prediction=polymorphism	ref_cov=55/58	total_cov=75/80
RA	408	.	NC_000913	581488	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.1	fisher_strand_p_value=1	frequency=2.597e-01	ks_quality_p_value=1	major_base=A	major_cov=55/59	major_frequency=7.403e-01	minor_base=C	minor_cov=19/21	new_cov=19/21	polymorphism_frequency=2.597e-01	polymorphism_score=113.1	prediction=polymorphism	ref_cov=55/59	total_cov=74/80
RA	409	.	NC_000913	581512	0	A	G	bias_e_value=4304330	bias_p_value=0.927326	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.7	fisher_strand_p_value=0.703178	frequency=2.384e-01	ks_quality_p_value=0.915615	major_base=A	major_cov=60/55	major_frequency=7.616e-01	minor_base=G	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=2.384e-01	polymorphism_score=95.4	prediction=polymorphism	ref_cov=60/55	total_cov=77/74
RA	410	.	NC_000913	581513	0	C	T	bias_e_value=4294290	bias_p_value=0.925164	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.0	fisher_strand_p_value=0.703178	frequency=2.384e-01	ks_quality_p_value=0.90869	major_base=C	major_cov=60/55	major_frequency=7.616e-01	minor_base=T	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=2.384e-01	polymorphism_score=98.5	prediction=polymorphism	ref_cov=60/55	total_cov=77/74
RA	411	.	NC_000913	581518	0	C	G	bias_e_value=4229290	bias_p_value=0.911161	consensus_reject=FREQUENCY_CUTOFF	consensus_score=338.2	fisher_strand_p_value=0.702023	frequency=2.303e-01	ks_quality_p_value=0.867881	major_base=C	major_cov=62/55	major_frequency=7.697e-01	minor_base=G	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=2.303e-01	polymorphism_score=109.0	prediction=polymorphism	ref_cov=62/55	total_cov=79/74
RA	412	.	NC_000913	581524	0	G	A	bias_e_value=4586550	bias_p_value=0.988128	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.1	fisher_strand_p_value=0.849918	frequency=2.467e-01	ks_quality_p_value=1	major_base=G	major_cov=59/54	major_frequency=7.533e-01	minor_base=A	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=2.467e-01	polymorphism_score=99.1	prediction=polymorphism	ref_cov=59/54	total_cov=77/73
RA	413	.	NC_000913	581527	0	G	C	bias_e_value=3116510	bias_p_value=0.671422	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.0	fisher_strand_p_value=0.850271	frequency=2.500e-01	ks_quality_p_value=0.362942	major_base=G	major_cov=57/54	major_frequency=7.500e-01	minor_base=C	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=2.500e-01	polymorphism_score=117.1	prediction=polymorphism	ref_cov=57/54	total_cov=75/73
RA	414	.	NC_000913	581530	0	C	G	bias_e_value=2519730	bias_p_value=0.542852	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.0	fisher_strand_p_value=0.566057	frequency=2.553e-01	ks_quality_p_value=0.376807	major_base=C	major_cov=56/49	major_frequency=7.447e-01	minor_base=G	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=2.553e-01	polymorphism_score=115.4	prediction=polymorphism	ref_cov=56/49	total_cov=74/68
RA	415	.	NC_000913	581548	0	C	T	bias_e_value=4547460	bias_p_value=0.979708	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.1	fisher_strand_p_value=1	frequency=2.296e-01	ks_quality_p_value=0.805428	major_base=C	major_cov=58/46	major_frequency=7.704e-01	minor_base=T	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=2.296e-01	polymorphism_score=85.5	prediction=polymorphism	ref_cov=58/46	total_cov=75/60
RA	416	.	NC_000913	581550	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.8	fisher_strand_p_value=1	frequency=2.230e-01	ks_quality_p_value=1	major_base=G	major_cov=59/49	major_frequency=7.770e-01	minor_base=A	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=2.230e-01	polymorphism_score=80.0	prediction=polymorphism	ref_cov=59/49	total_cov=76/63
RA	417	.	NC_000913	581554	0	C	T	bias_e_value=4576530	bias_p_value=0.985971	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.7	fisher_strand_p_value=1	frequency=2.168e-01	ks_quality_p_value=0.83724	major_base=C	major_cov=61/51	major_frequency=7.832e-01	minor_base=T	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=2.168e-01	polymorphism_score=81.9	prediction=polymorphism	ref_cov=61/51	total_cov=78/65
RA	418	.	NC_000913	581560	0	C	A	bias_e_value=4442490	bias_p_value=0.957093	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.4	fisher_strand_p_value=1	frequency=2.174e-01	ks_quality_p_value=0.721742	major_base=C	major_cov=62/46	major_frequency=7.826e-01	minor_base=A	minor_cov=17/13	new_cov=17/13	polymorphism_frequency=2.174e-01	polymorphism_score=74.2	prediction=polymorphism	ref_cov=62/46	total_cov=79/61
RA	419	.	NC_000913	581578	0	G	T	bias_e_value=4487930	bias_p_value=0.966881	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.6	fisher_strand_p_value=0.82707	frequency=2.000e-01	ks_quality_p_value=0.911565	major_base=G	major_cov=63/45	major_frequency=8.000e-01	minor_base=T	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=2.000e-01	polymorphism_score=55.7	prediction=polymorphism	ref_cov=63/45	total_cov=80/55
RA	420	.	NC_000913	582597	0	C	T	bias_e_value=2564580	bias_p_value=0.552514	consensus_score=437.8	fisher_strand_p_value=0.219608	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=72/62	major_frequency=9.853e-01	minor_base=C	minor_cov=0/2	new_cov=72/62	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=72/64
RA	421	.	NC_000913	632272	0	C	T	bias_e_value=4058410	bias_p_value=0.874346	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.4	fisher_strand_p_value=0.542616	frequency=3.980e-01	ks_quality_p_value=1	major_base=C	major_cov=31/28	major_frequency=6.020e-01	minor_base=T	minor_cov=23/16	new_cov=23/16	polymorphism_frequency=3.980e-01	polymorphism_score=112.9	prediction=polymorphism	ref_cov=31/28	total_cov=54/44
RA	422	.	NC_000913	694941	0	G	A	bias_e_value=3594060	bias_p_value=0.774307	consensus_score=320.8	fisher_strand_p_value=0.408602	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/55	major_frequency=9.892e-01	minor_base=G	minor_cov=1/0	new_cov=37/55	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/55
RA	423	.	NC_000913	696470	0	C	T	bias_e_value=3896180	bias_p_value=0.839396	consensus_score=315.4	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/47	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=50/47	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	424	.	NC_000913	708774	0	G	A	consensus_score=294.0	frequency=1	major_base=A	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	425	.	NC_000913	721604	0	G	A	consensus_score=239.9	frequency=1	major_base=A	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	426	.	NC_000913	770718	0	C	T	bias_e_value=3418200	bias_p_value=0.736418	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.1	fisher_strand_p_value=0.393302	frequency=4.681e-01	ks_quality_p_value=0.93704	major_base=C	major_cov=21/29	major_frequency=5.319e-01	minor_base=T	minor_cov=14/30	new_cov=14/30	polymorphism_frequency=4.681e-01	polymorphism_score=136.2	prediction=polymorphism	ref_cov=21/29	total_cov=35/59
RA	427	.	NC_000913	780624	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=231.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/40	major_frequency=9.600e-01	minor_base=C	minor_cov=1/2	new_cov=32/40	polymorphism_frequency=9.600e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/2	total_cov=33/42
RA	428	.	NC_000913	789580	0	C	A	consensus_score=293.1	frequency=1	major_base=A	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	429	.	NC_000913	807343	0	C	G	bias_e_value=2398460	bias_p_value=0.516726	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.6	fisher_strand_p_value=0.196809	frequency=4.000e-01	ks_quality_p_value=1	major_base=C	major_cov=5/7	major_frequency=6.000e-01	minor_base=G	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=4.000e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=5/7	total_cov=11/9
RA	430	.	NC_000913	847955	0	G	A	bias_e_value=0.103735	bias_p_value=2.23487e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.1	fisher_strand_p_value=1.0302e-09	frequency=2.812e-01	ks_quality_p_value=1	major_base=G	major_cov=54/38	major_frequency=7.188e-01	minor_base=A	minor_cov=1/35	new_cov=1/35	polymorphism_frequency=2.812e-01	polymorphism_score=45.2	prediction=polymorphism	ref_cov=54/38	total_cov=55/73
RA	431	.	NC_000913	968837	0	G	A	consensus_score=251.3	frequency=1	major_base=A	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	432	.	NC_000913	1040126	0	G	T	consensus_score=277.8	frequency=1	major_base=T	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	433	.	NC_000913	1061935	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=218.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/21	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=50/21	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/21
RA	434	.	NC_000913	1111727	0	C	T	consensus_score=304.0	frequency=1	major_base=T	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	435	.	NC_000913	1111728	0	C	T	bias_e_value=3892340	bias_p_value=0.838567	consensus_score=300.7	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/42	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=45/42	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/43
RA	436	.	NC_000913	1169836	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=225.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=29/33	major_frequency=9.841e-01	minor_base=A	minor_cov=0/1	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/34
RA	437	.	NC_000913	1189980	0	A	G	consensus_score=225.9	frequency=1	major_base=G	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	438	.	NC_000913	1196220	0	C	T	consensus_score=186.9	frequency=1	major_base=T	major_cov=23/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/37
RA	439	.	NC_000913	1196232	0	C	T	consensus_score=172.8	frequency=1	major_base=T	major_cov=23/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/33
RA	440	.	NC_000913	1196245	0	T	C	consensus_score=148.5	frequency=1	major_base=C	major_cov=17/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/31
RA	441	.	NC_000913	1196247	0	A	G	consensus_score=147.9	frequency=1	major_base=G	major_cov=17/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/31
RA	442	.	NC_000913	1196277	0	C	T	consensus_score=100.1	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	443	.	NC_000913	1196280	0	G	C	consensus_score=101.9	frequency=1	major_base=C	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	444	.	NC_000913	1196283	0	A	G	consensus_score=105.3	frequency=1	major_base=G	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	445	.	NC_000913	1196292	0	C	T	consensus_score=84.4	frequency=1	major_base=T	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	446	.	NC_000913	1196304	0	G	A	consensus_score=60.6	deleted=1	frequency=1	major_base=A	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	447	.	NC_000913	1196316	0	T	A	consensus_score=48.9	deleted=1	frequency=1	major_base=A	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	448	.	NC_000913	1196325	0	A	G	consensus_score=33.7	deleted=1	frequency=1	major_base=G	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	449	.	NC_000913	1196352	0	C	A	consensus_score=19.2	deleted=1	frequency=1	major_base=A	major_cov=8/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/3
RA	450	.	NC_000913	1239267	0	G	T	bias_e_value=4317650	bias_p_value=0.930197	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.5	fisher_strand_p_value=0.821153	frequency=3.875e-01	ks_quality_p_value=0.792102	major_base=G	major_cov=27/22	major_frequency=6.125e-01	minor_base=T	minor_cov=18/13	new_cov=18/13	polymorphism_frequency=3.875e-01	polymorphism_score=94.2	prediction=polymorphism	ref_cov=27/22	total_cov=45/35
RA	451	.	NC_000913	1246568	0	C	A	bias_e_value=43.7251	bias_p_value=9.42015e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.5	fisher_strand_p_value=6.15674e-07	frequency=2.963e-01	ks_quality_p_value=1	major_base=C	major_cov=26/31	major_frequency=7.037e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.963e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=26/31	total_cov=50/31
RA	452	.	NC_000913	1301992	0	A	T	consensus_score=305.0	frequency=1	major_base=T	major_cov=32/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/58
RA	453	.	NC_000913	1306736	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=387.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=71/34	major_frequency=9.906e-01	minor_base=A	minor_cov=1/0	new_cov=71/34	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/34
RA	454	.	NC_000913	1308684	0	T	C	consensus_score=246.3	frequency=1	major_base=C	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	455	.	NC_000913	1331059	0	T	A	bias_e_value=2551520	bias_p_value=0.549701	consensus_score=332.0	fisher_strand_p_value=0.217757	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/44	major_frequency=9.796e-01	minor_base=G	minor_cov=0/2	new_cov=52/44	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	456	.	NC_000913	1331060	0	C	T	consensus_score=344.3	frequency=1	major_base=T	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	457	.	NC_000913	1337394	0	A	G	bias_e_value=2112590	bias_p_value=0.455136	consensus_score=252.8	fisher_strand_p_value=0.161051	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/28	major_frequency=9.730e-01	minor_base=T	minor_cov=0/2	new_cov=44/28	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	458	.	NC_000913	1358859	0	T	C	consensus_score=291.9	frequency=1	major_base=C	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	459	.	NC_000913	1398088	0	C	A	bias_e_value=2.50668e-36	bias_p_value=5.40041e-43	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1529.6	fisher_strand_p_value=5.2452e-45	frequency=2.028e-01	ks_quality_p_value=1	major_base=C	major_cov=196/323	major_frequency=7.972e-01	minor_base=A	minor_cov=131/1	new_cov=131/1	polymorphism_frequency=2.028e-01	polymorphism_score=41.6	prediction=polymorphism	ref_cov=196/323	total_cov=327/327
RA	460	.	NC_000913	1423244	0	G	C	consensus_score=25.3	deleted=1	frequency=1	major_base=C	major_cov=4/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/13
RA	461	.	NC_000913	1423272	0	C	T	consensus_score=42.1	deleted=1	frequency=1	major_base=T	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	462	.	NC_000913	1423273	0	G	A	consensus_score=42.9	deleted=1	frequency=1	major_base=A	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	463	.	NC_000913	1423283	0	A	C	consensus_score=45.2	deleted=1	frequency=1	major_base=C	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	464	.	NC_000913	1423284	0	A	C	consensus_score=43.0	deleted=1	frequency=1	major_base=C	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	465	.	NC_000913	1423338	0	G	C	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=42.4	deleted=1	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=9/15	major_frequency=9.600e-01	minor_base=A	minor_cov=1/0	new_cov=9/15	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	466	.	NC_000913	1423404	0	G	T	consensus_score=42.9	deleted=1	frequency=1	major_base=T	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	467	.	NC_000913	1428925	0	C	T	consensus_score=34.7	deleted=1	frequency=1	major_base=T	major_cov=2/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/11
RA	468	.	NC_000913	1428945	0	C	T	consensus_score=57.4	deleted=1	frequency=1	major_base=T	major_cov=4/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/16
RA	469	.	NC_000913	1428954	0	T	A	consensus_score=67.8	deleted=1	frequency=1	major_base=A	major_cov=6/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/16
RA	470	.	NC_000913	1428963	0	G	T	consensus_score=72.7	deleted=1	frequency=1	major_base=T	major_cov=6/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/17
RA	471	.	NC_000913	1428966	0	T	G	consensus_score=81.4	deleted=1	frequency=1	major_base=G	major_cov=6/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/17
RA	472	.	NC_000913	1428978	0	G	A	consensus_score=74.1	deleted=1	frequency=1	major_base=A	major_cov=6/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/17
RA	473	.	NC_000913	1429021	0	T	A	consensus_score=100.7	deleted=1	frequency=1	major_base=A	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	474	.	NC_000913	1429022	0	T	A	consensus_score=100.3	deleted=1	frequency=1	major_base=A	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	475	.	NC_000913	1429024	0	A	C	consensus_score=101.9	deleted=1	frequency=1	major_base=C	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	476	.	NC_000913	1429027	0	C	T	consensus_score=90.9	deleted=1	frequency=1	major_base=T	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	477	.	NC_000913	1429069	0	T	A	consensus_score=111.3	frequency=1	major_base=A	major_cov=11/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/21
RA	478	.	NC_000913	1429072	0	A	C	consensus_score=115.5	frequency=1	major_base=C	major_cov=11/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/21
RA	479	.	NC_000913	1429111	0	A	C	consensus_score=146.1	frequency=1	major_base=C	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	480	.	NC_000913	1429114	0	C	T	consensus_score=133.6	frequency=1	major_base=T	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	481	.	NC_000913	1429126	0	A	C	consensus_score=147.9	frequency=1	major_base=C	major_cov=16/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/26
RA	482	.	NC_000913	1429128	0	A	G	consensus_score=154.4	frequency=1	major_base=G	major_cov=16/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/26
RA	483	.	NC_000913	1429160	0	C	G	consensus_score=173.1	frequency=1	major_base=G	major_cov=19/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	484	.	NC_000913	1429164	0	C	G	consensus_score=170.6	frequency=1	major_base=G	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	485	.	NC_000913	1429171	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=20/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/30
RA	486	.	NC_000913	1429204	0	C	T	consensus_score=152.3	frequency=1	major_base=T	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	487	.	NC_000913	1429207	0	T	G	consensus_score=174.9	frequency=1	major_base=G	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	488	.	NC_000913	1429225	0	C	T	consensus_score=103.3	frequency=1	major_base=T	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	489	.	NC_000913	1429228	0	T	C	consensus_score=114.8	frequency=1	major_base=C	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	490	.	NC_000913	1429231	0	T	C	consensus_score=117.1	frequency=1	major_base=C	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	491	.	NC_000913	1429235	0	T	C	consensus_score=117.1	frequency=1	major_base=C	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	492	.	NC_000913	1429236	0	T	A	consensus_score=114.0	frequency=1	major_base=A	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	493	.	NC_000913	1429240	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=100.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/16	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/17
RA	494	.	NC_000913	1429243	0	A	C	consensus_score=111.0	frequency=1	major_base=C	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	495	.	NC_000913	1429246	0	A	T	consensus_score=103.7	frequency=1	major_base=T	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	496	.	NC_000913	1429249	0	C	T	consensus_score=103.3	frequency=1	major_base=T	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	497	.	NC_000913	1429252	0	G	A	consensus_score=111.6	frequency=1	major_base=A	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	498	.	NC_000913	1429255	0	G	A	consensus_score=110.1	frequency=1	major_base=A	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	499	.	NC_000913	1429258	0	A	G	consensus_score=115.7	frequency=1	major_base=G	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	500	.	NC_000913	1429261	0	T	C	bias_e_value=3824330	bias_p_value=0.823915	consensus_score=103.8	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=14/17	major_frequency=9.688e-01	minor_base=T	minor_cov=1/0	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/17
RA	501	.	NC_000913	1429273	0	T	C	consensus_score=148.0	frequency=1	major_base=C	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	502	.	NC_000913	1429291	0	T	A	consensus_score=141.2	frequency=1	major_base=A	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	503	.	NC_000913	1429297	0	C	G	consensus_score=124.8	frequency=1	major_base=G	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	504	.	NC_000913	1429300	0	T	G	consensus_score=123.6	frequency=1	major_base=G	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	505	.	NC_000913	1429319	0	G	T	consensus_score=119.5	frequency=1	major_base=T	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	506	.	NC_000913	1429345	0	T	G	consensus_score=154.8	frequency=1	major_base=G	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	507	.	NC_000913	1429353	0	C	T	consensus_score=131.9	frequency=1	major_base=T	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	508	.	NC_000913	1429354	0	A	G	consensus_score=144.9	frequency=1	major_base=G	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	509	.	NC_000913	1429360	0	C	T	consensus_score=138.6	frequency=1	major_base=T	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	510	.	NC_000913	1429364	0	T	C	consensus_score=148.7	frequency=1	major_base=C	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	511	.	NC_000913	1429404	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=136.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/22	major_frequency=9.762e-01	minor_base=G	minor_cov=0/1	new_cov=19/22	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	512	.	NC_000913	1429416	0	A	G	bias_e_value=3887480	bias_p_value=0.837521	consensus_score=138.6	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=20/18	major_frequency=9.744e-01	minor_base=A	minor_cov=0/1	new_cov=20/18	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/19
RA	513	.	NC_000913	1429417	0	C	T	consensus_score=124.9	frequency=1	major_base=T	major_cov=20/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	514	.	NC_000913	1429425	0	C	A	consensus_score=139.0	frequency=1	major_base=A	major_cov=20/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	515	.	NC_000913	1429435	0	G	A	consensus_score=131.8	frequency=1	major_base=A	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	516	.	NC_000913	1429442	0	A	G	bias_e_value=3885170	bias_p_value=0.837022	consensus_score=121.8	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=18/17	major_frequency=9.459e-01	minor_base=T	minor_cov=0/2	new_cov=18/17	polymorphism_frequency=9.459e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	517	.	NC_000913	1429444	0	T	C	consensus_score=132.5	frequency=1	major_base=C	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	518	.	NC_000913	1429453	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=114.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/17	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	519	.	NC_000913	1429454	0	A	G	consensus_score=130.5	frequency=1	major_base=G	major_cov=18/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	520	.	NC_000913	1429462	0	C	T	consensus_score=101.0	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	521	.	NC_000913	1429463	0	C	G	consensus_score=108.6	frequency=1	major_base=G	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	522	.	NC_000913	1429464	0	G	C	consensus_score=107.2	frequency=1	major_base=C	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	523	.	NC_000913	1429466	0	G	C	consensus_score=108.1	frequency=1	major_base=C	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	524	.	NC_000913	1429470	0	C	T	consensus_score=99.9	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	525	.	NC_000913	1429471	0	G	C	consensus_score=108.1	frequency=1	major_base=C	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	526	.	NC_000913	1429474	0	A	G	bias_e_value=3816980	bias_p_value=0.822332	consensus_score=104.3	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/13	major_frequency=9.667e-01	minor_base=T	minor_cov=0/1	new_cov=16/13	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	527	.	NC_000913	1429475	0	A	G	consensus_score=110.0	frequency=1	major_base=G	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	528	.	NC_000913	1429479	0	A	T	consensus_score=101.0	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	529	.	NC_000913	1429482	0	C	T	consensus_score=99.2	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	530	.	NC_000913	1429484	0	G	A	consensus_score=103.8	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	531	.	NC_000913	1429492	0	T	A	consensus_score=101.0	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	532	.	NC_000913	1429493	0	G	A	consensus_score=99.8	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	533	.	NC_000913	1429495	0	G	T	consensus_score=98.9	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	534	.	NC_000913	1429510	0	A	C	consensus_score=120.0	frequency=1	major_base=C	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	535	.	NC_000913	1429522	0	A	C	consensus_score=126.7	frequency=1	major_base=C	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	536	.	NC_000913	1429534	0	C	T	consensus_score=115.6	frequency=1	major_base=T	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	537	.	NC_000913	1429537	0	G	A	consensus_score=115.9	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	538	.	NC_000913	1429543	0	G	A	consensus_score=109.8	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	539	.	NC_000913	1429550	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=116.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=20/19	major_frequency=9.750e-01	minor_base=T	minor_cov=0/1	new_cov=20/19	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/20
RA	540	.	NC_000913	1429551	0	C	A	consensus_score=136.3	frequency=1	major_base=A	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	541	.	NC_000913	1429558	0	T	C	consensus_score=160.2	frequency=1	major_base=C	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	542	.	NC_000913	1429562	0	A	G	consensus_score=161.1	frequency=1	major_base=G	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	543	.	NC_000913	1429569	0	G	A	consensus_score=148.5	frequency=1	major_base=A	major_cov=25/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	544	.	NC_000913	1429571	0	A	G	consensus_score=163.3	frequency=1	major_base=G	major_cov=25/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	545	.	NC_000913	1429580	0	A	G	consensus_score=159.8	frequency=1	major_base=G	major_cov=25/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/19
RA	546	.	NC_000913	1429597	0	A	G	consensus_score=157.7	frequency=1	major_base=G	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	547	.	NC_000913	1429598	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=156.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=27/17	major_frequency=9.778e-01	minor_base=A	minor_cov=1/0	new_cov=27/17	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	548	.	NC_000913	1429599	0	C	A	consensus_score=142.7	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	549	.	NC_000913	1429609	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=165.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=24/20	major_frequency=9.778e-01	minor_base=A	minor_cov=1/0	new_cov=24/20	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	550	.	NC_000913	1429612	0	C	A	consensus_score=144.1	frequency=1	major_base=A	major_cov=25/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	551	.	NC_000913	1429615	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=161.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=24/20	major_frequency=9.778e-01	minor_base=A	minor_cov=1/0	new_cov=24/20	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	552	.	NC_000913	1429632	0	G	A	consensus_score=166.7	frequency=1	major_base=A	major_cov=28/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/21
RA	553	.	NC_000913	1429682	0	T	G	consensus_score=157.7	frequency=1	major_base=G	major_cov=25/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/18
RA	554	.	NC_000913	1429692	0	T	A	consensus_score=129.6	frequency=1	major_base=A	major_cov=25/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/17
RA	555	.	NC_000913	1429702	0	A	C	consensus_score=143.8	frequency=1	major_base=C	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	556	.	NC_000913	1429708	0	A	G	consensus_score=136.1	frequency=1	major_base=G	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	557	.	NC_000913	1429714	0	A	C	consensus_score=141.5	frequency=1	major_base=C	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	558	.	NC_000913	1429724	0	A	G	consensus_score=142.0	frequency=1	major_base=G	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	559	.	NC_000913	1429732	0	G	A	consensus_score=128.1	frequency=1	major_base=A	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	560	.	NC_000913	1429735	0	A	G	consensus_score=137.8	frequency=1	major_base=G	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	561	.	NC_000913	1429741	0	A	G	consensus_score=140.7	frequency=1	major_base=G	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	562	.	NC_000913	1429744	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=146.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=23/16	major_frequency=9.750e-01	minor_base=A	minor_cov=1/0	new_cov=23/16	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	563	.	NC_000913	1429747	0	G	C	consensus_score=139.2	frequency=1	major_base=C	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	564	.	NC_000913	1429750	0	C	T	bias_e_value=4641590	bias_p_value=0.999987	consensus_score=134.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994885	major_base=T	major_cov=23/16	major_frequency=9.750e-01	minor_base=C	minor_cov=1/0	new_cov=23/16	polymorphism_frequency=9.750e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=24/16
RA	565	.	NC_000913	1429753	0	G	A	consensus_score=123.5	frequency=1	major_base=A	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	566	.	NC_000913	1429756	0	C	A	consensus_score=125.1	frequency=1	major_base=A	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	567	.	NC_000913	1429759	0	G	A	consensus_score=126.2	frequency=1	major_base=A	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	568	.	NC_000913	1429767	0	C	T	consensus_score=144.2	frequency=1	major_base=T	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	569	.	NC_000913	1429780	0	A	G	consensus_score=129.4	frequency=1	major_base=G	major_cov=22/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/14
RA	570	.	NC_000913	1429783	0	G	A	consensus_score=113.3	frequency=1	major_base=A	major_cov=22/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/14
RA	571	.	NC_000913	1429816	0	C	T	consensus_score=107.7	frequency=1	major_base=T	major_cov=22/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/11
RA	572	.	NC_000913	1429820	0	A	G	consensus_score=109.5	frequency=1	major_base=G	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	573	.	NC_000913	1429823	0	A	C	bias_e_value=4034440	bias_p_value=0.869182	consensus_score=108.4	fisher_strand_p_value=0.534274	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=19/11	major_frequency=9.375e-01	minor_base=A	minor_cov=2/0	new_cov=19/11	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=21/11
RA	574	.	NC_000913	1429851	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=51.0	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/7	major_frequency=9.474e-01	minor_base=C	minor_cov=1/0	new_cov=11/7	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=13/7
RA	575	.	NC_000913	1429858	0	C	T	consensus_score=54.5	deleted=1	frequency=1	major_base=T	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	576	.	NC_000913	1429861	0	G	C	bias_e_value=3881170	bias_p_value=0.836162	consensus_score=40.0	deleted=1	fisher_strand_p_value=0.485294	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=8/7	major_frequency=8.824e-01	minor_base=A	minor_cov=2/0	new_cov=8/7	polymorphism_frequency=8.824e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	577	.	NC_000913	1429863	0	A	G	consensus_score=55.6	deleted=1	frequency=1	major_base=G	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	578	.	NC_000913	1429888	0	C	T	consensus_score=36.1	deleted=1	frequency=1	major_base=T	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	579	.	NC_000913	1429897	0	T	A	consensus_score=24.8	deleted=1	frequency=1	major_base=A	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	580	.	NC_000913	1466432	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.1	fisher_strand_p_value=1	frequency=2.154e-01	ks_quality_p_value=1	major_base=A	major_cov=26/25	major_frequency=7.846e-01	minor_base=G	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=2.154e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=26/25	total_cov=34/32
RA	581	.	NC_000913	1466438	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.1	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=1	major_base=T	major_cov=24/24	major_frequency=7.500e-01	minor_base=G	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=2.500e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=24/24	total_cov=34/32
RA	582	.	NC_000913	1502770	0	T	C	bias_e_value=0.0361661	bias_p_value=7.79164e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.2	fisher_strand_p_value=3.41786e-10	frequency=2.522e-01	ks_quality_p_value=1	major_base=T	major_cov=53/33	major_frequency=7.478e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.522e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=53/33	total_cov=54/62
RA	583	.	NC_000913	1502772	0	G	A	bias_e_value=5.56894	bias_p_value=1.19977e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.5	fisher_strand_p_value=6.85769e-08	frequency=2.348e-01	ks_quality_p_value=1	major_base=G	major_cov=53/35	major_frequency=7.652e-01	minor_base=A	minor_cov=1/26	new_cov=1/26	polymorphism_frequency=2.348e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=53/35	total_cov=54/62
RA	584	.	NC_000913	1580217	0	C	A	bias_e_value=0.832061	bias_p_value=1.7926e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.1	fisher_strand_p_value=9.19039e-09	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=36/56	major_frequency=7.931e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.069e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=36/56	total_cov=60/57
RA	585	.	NC_000913	1591711	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=270.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/37	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=44/37	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/37
RA	586	.	NC_000913	1629247	0	C	T	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=262.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996762	major_base=T	major_cov=38/36	major_frequency=9.867e-01	minor_base=A	minor_cov=1/0	new_cov=38/36	polymorphism_frequency=9.867e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	587	.	NC_000913	1634370	0	T	C	bias_e_value=4173610	bias_p_value=0.899165	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.4	fisher_strand_p_value=0.626371	frequency=3.750e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=16/4	major_frequency=6.250e-01	minor_base=C	minor_cov=11/1	new_cov=11/1	polymorphism_frequency=3.750e-01	polymorphism_score=31.2	prediction=polymorphism	ref_cov=16/4	total_cov=27/5
RA	588	.	NC_000913	1634382	0	T	C	bias_e_value=3467590	bias_p_value=0.747059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.9	fisher_strand_p_value=0.480585	frequency=4.054e-01	ks_quality_p_value=0.789364	major_base=T	major_cov=15/7	major_frequency=5.946e-01	minor_base=C	minor_cov=12/3	new_cov=12/3	polymorphism_frequency=4.054e-01	polymorphism_score=41.1	prediction=polymorphism	ref_cov=15/7	total_cov=27/10
RA	589	.	NC_000913	1634388	0	T	G	bias_e_value=4441150	bias_p_value=0.956804	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.1	fisher_strand_p_value=0.720857	frequency=4.750e-01	ks_quality_p_value=1	major_base=T	major_cov=15/6	major_frequency=5.250e-01	minor_base=G	minor_cov=15/4	new_cov=15/4	polymorphism_frequency=4.750e-01	polymorphism_score=55.4	prediction=polymorphism	ref_cov=15/6	total_cov=30/10
RA	590	.	NC_000913	1634404	0	A	G	bias_e_value=4466920	bias_p_value=0.962356	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.0	fisher_strand_p_value=0.738473	frequency=5.238e-01	ks_quality_p_value=1	major_base=G	major_cov=15/7	major_frequency=5.238e-01	minor_base=A	minor_cov=15/5	new_cov=15/7	polymorphism_frequency=5.238e-01	polymorphism_score=39.2	prediction=polymorphism	ref_cov=15/5	total_cov=30/13
RA	591	.	NC_000913	1634482	0	T	C	bias_e_value=3951240	bias_p_value=0.851258	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=0.506825	frequency=5.263e-01	ks_quality_p_value=1	major_base=C	major_cov=33/17	major_frequency=5.263e-01	minor_base=T	minor_cov=33/12	new_cov=33/17	polymorphism_frequency=5.263e-01	polymorphism_score=133.6	prediction=polymorphism	ref_cov=33/12	total_cov=66/30
RA	592	.	NC_000913	1634484	0	G	T	bias_e_value=3474570	bias_p_value=0.748564	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.7	fisher_strand_p_value=0.380913	frequency=5.263e-01	ks_quality_p_value=1	major_base=T	major_cov=32/18	major_frequency=5.263e-01	minor_base=G	minor_cov=33/12	new_cov=32/18	polymorphism_frequency=5.263e-01	polymorphism_score=141.8	prediction=polymorphism	ref_cov=33/12	total_cov=65/30
RA	593	.	NC_000913	1634569	0	A	T	bias_e_value=4008800	bias_p_value=0.863657	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.3	fisher_strand_p_value=0.525575	frequency=5.179e-01	ks_quality_p_value=1	major_base=T	major_cov=57/30	major_frequency=5.179e-01	minor_base=A	minor_cov=49/32	new_cov=57/30	polymorphism_frequency=5.179e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=49/32	total_cov=107/63
RA	594	.	NC_000913	1634571	0	C	T	bias_e_value=4288610	bias_p_value=0.92394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.8	fisher_strand_p_value=0.636252	frequency=5.176e-01	ks_quality_p_value=1	major_base=T	major_cov=57/31	major_frequency=5.176e-01	minor_base=C	minor_cov=50/32	new_cov=57/31	polymorphism_frequency=5.176e-01	polymorphism_score=250.4	prediction=polymorphism	ref_cov=50/32	total_cov=107/63
RA	595	.	NC_000913	1634578	0	T	C	bias_e_value=3110590	bias_p_value=0.670146	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.4	fisher_strand_p_value=0.637764	frequency=5.291e-01	ks_quality_p_value=0.482176	major_base=C	major_cov=58/33	major_frequency=5.291e-01	minor_base=T	minor_cov=48/33	new_cov=58/33	polymorphism_frequency=5.291e-01	polymorphism_score=238.9	prediction=polymorphism	ref_cov=48/33	total_cov=107/66
RA	596	.	NC_000913	1634597	0	C	A	bias_e_value=4607270	bias_p_value=0.992592	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.3	fisher_strand_p_value=0.880832	frequency=5.243e-01	ks_quality_p_value=0.999938	major_base=A	major_cov=59/38	major_frequency=5.243e-01	minor_base=C	minor_cov=52/36	new_cov=59/38	polymorphism_frequency=5.243e-01	polymorphism_score=283.6	prediction=polymorphism	ref_cov=52/36	total_cov=111/75
RA	597	.	NC_000913	1634658	0	A	G	bias_e_value=4343920	bias_p_value=0.935857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.8	fisher_strand_p_value=0.663919	frequency=5.213e-01	ks_quality_p_value=1	major_base=G	major_cov=49/49	major_frequency=5.213e-01	minor_base=A	minor_cov=48/42	new_cov=49/49	polymorphism_frequency=5.213e-01	polymorphism_score=281.3	prediction=polymorphism	ref_cov=48/42	total_cov=97/91
RA	598	.	NC_000913	1634661	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=1	frequency=5.410e-01	ks_quality_p_value=1	major_base=G	major_cov=50/49	major_frequency=5.410e-01	minor_base=C	minor_cov=42/42	new_cov=50/49	polymorphism_frequency=5.410e-01	polymorphism_score=280.7	prediction=polymorphism	ref_cov=42/42	total_cov=92/91
RA	599	.	NC_000913	1634676	0	A	G	bias_e_value=4600910	bias_p_value=0.991222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.1	fisher_strand_p_value=0.87997	frequency=5.429e-01	ks_quality_p_value=0.989194	major_base=G	major_cov=49/46	major_frequency=5.429e-01	minor_base=A	minor_cov=40/40	new_cov=49/46	polymorphism_frequency=5.429e-01	polymorphism_score=253.6	prediction=polymorphism	ref_cov=40/40	total_cov=89/86
RA	600	.	NC_000913	1634699	0	A	C	bias_e_value=4310760	bias_p_value=0.928713	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.5	fisher_strand_p_value=0.877213	frequency=5.298e-01	ks_quality_p_value=0.737571	major_base=C	major_cov=46/43	major_frequency=5.298e-01	minor_base=A	minor_cov=39/40	new_cov=46/43	polymorphism_frequency=5.298e-01	polymorphism_score=249.9	prediction=polymorphism	ref_cov=39/40	total_cov=85/83
RA	601	.	NC_000913	1634724	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.9	fisher_strand_p_value=1	frequency=5.226e-01	ks_quality_p_value=1	major_base=A	major_cov=42/39	major_frequency=5.226e-01	minor_base=G	minor_cov=38/36	new_cov=42/39	polymorphism_frequency=5.226e-01	polymorphism_score=210.1	prediction=polymorphism	ref_cov=38/36	total_cov=80/75
RA	602	.	NC_000913	1634769	0	T	A	bias_e_value=2543130	bias_p_value=0.547894	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.0	fisher_strand_p_value=0.372413	frequency=4.574e-01	ks_quality_p_value=0.581542	major_base=T	major_cov=27/43	major_frequency=5.426e-01	minor_base=A	minor_cov=28/31	new_cov=28/31	polymorphism_frequency=4.574e-01	polymorphism_score=237.1	prediction=polymorphism	ref_cov=27/43	total_cov=55/74
RA	603	.	NC_000913	1634778	0	T	G	bias_e_value=3444340	bias_p_value=0.74205	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.0	fisher_strand_p_value=0.378782	frequency=4.478e-01	ks_quality_p_value=0.987971	major_base=T	major_cov=28/46	major_frequency=5.522e-01	minor_base=G	minor_cov=28/32	new_cov=28/32	polymorphism_frequency=4.478e-01	polymorphism_score=193.8	prediction=polymorphism	ref_cov=28/46	total_cov=56/78
RA	604	.	NC_000913	1634799	0	A	G	bias_e_value=1599840	bias_p_value=0.34467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.1	fisher_strand_p_value=0.203029	frequency=4.065e-01	ks_quality_p_value=0.523788	major_base=A	major_cov=32/41	major_frequency=5.935e-01	minor_base=G	minor_cov=28/22	new_cov=28/22	polymorphism_frequency=4.065e-01	polymorphism_score=146.9	prediction=polymorphism	ref_cov=32/41	total_cov=61/63
RA	605	.	NC_000913	1635974	0	T	G	bias_e_value=4515080	bias_p_value=0.972731	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=0.796157	frequency=2.143e-01	ks_quality_p_value=0.97436	major_base=T	major_cov=32/34	major_frequency=7.857e-01	minor_base=G	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.143e-01	polymorphism_score=43.1	prediction=polymorphism	ref_cov=32/34	total_cov=40/44
RA	606	.	NC_000913	1636016	0	G	A	bias_e_value=4640910	bias_p_value=0.999839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.2	fisher_strand_p_value=1	frequency=2.143e-01	ks_quality_p_value=0.982124	major_base=G	major_cov=29/37	major_frequency=7.857e-01	minor_base=A	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.143e-01	polymorphism_score=43.1	prediction=polymorphism	ref_cov=29/37	total_cov=37/47
RA	607	.	NC_000913	1636068	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.2	fisher_strand_p_value=1	frequency=2.169e-01	ks_quality_p_value=1	major_base=T	major_cov=29/36	major_frequency=7.831e-01	minor_base=C	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.169e-01	polymorphism_score=39.1	prediction=polymorphism	ref_cov=29/36	total_cov=37/46
RA	608	.	NC_000913	1636074	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.1	fisher_strand_p_value=1	frequency=2.118e-01	ks_quality_p_value=1	major_base=C	major_cov=30/37	major_frequency=7.882e-01	minor_base=T	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.118e-01	polymorphism_score=45.4	prediction=polymorphism	ref_cov=30/37	total_cov=38/47
RA	609	.	NC_000913	1636128	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.0	fisher_strand_p_value=1	frequency=2.021e-01	ks_quality_p_value=1	major_base=C	major_cov=38/37	major_frequency=7.979e-01	minor_base=T	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.021e-01	polymorphism_score=45.3	prediction=polymorphism	ref_cov=38/37	total_cov=47/47
RA	610	.	NC_000913	1636382	0	C	A	bias_e_value=3750990	bias_p_value=0.808116	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.7	fisher_strand_p_value=0.529931	frequency=3.091e-01	ks_quality_p_value=0.846307	major_base=C	major_cov=43/33	major_frequency=6.909e-01	minor_base=A	minor_cov=22/12	new_cov=22/12	polymorphism_frequency=3.091e-01	polymorphism_score=85.8	prediction=polymorphism	ref_cov=43/33	total_cov=65/45
RA	611	.	NC_000913	1636413	0	C	A	bias_e_value=2878470	bias_p_value=0.620138	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=0.312427	frequency=3.364e-01	ks_quality_p_value=0.855966	major_base=C	major_cov=37/36	major_frequency=6.636e-01	minor_base=A	minor_cov=23/14	new_cov=23/14	polymorphism_frequency=3.364e-01	polymorphism_score=89.6	prediction=polymorphism	ref_cov=37/36	total_cov=60/50
RA	612	.	NC_000913	1636423	0	T	C	bias_e_value=2717630	bias_p_value=0.585487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.1	fisher_strand_p_value=0.310591	frequency=3.426e-01	ks_quality_p_value=0.779463	major_base=T	major_cov=36/35	major_frequency=6.574e-01	minor_base=C	minor_cov=23/14	new_cov=23/14	polymorphism_frequency=3.426e-01	polymorphism_score=107.5	prediction=polymorphism	ref_cov=36/35	total_cov=59/49
RA	613	.	NC_000913	1636455	0	G	A	bias_e_value=1821330	bias_p_value=0.392388	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.6	fisher_strand_p_value=0.481188	frequency=4.496e-01	ks_quality_p_value=0.267279	major_base=G	major_cov=38/33	major_frequency=5.504e-01	minor_base=A	minor_cov=27/31	new_cov=27/31	polymorphism_frequency=4.496e-01	polymorphism_score=170.7	prediction=polymorphism	ref_cov=38/33	total_cov=65/66
RA	614	.	NC_000913	1636484	0	C	T	bias_e_value=4344840	bias_p_value=0.936054	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.9	fisher_strand_p_value=0.735891	frequency=4.429e-01	ks_quality_p_value=0.902851	major_base=C	major_cov=39/39	major_frequency=5.571e-01	minor_base=T	minor_cov=29/33	new_cov=29/33	polymorphism_frequency=4.429e-01	polymorphism_score=191.8	prediction=polymorphism	ref_cov=39/39	total_cov=68/73
RA	615	.	NC_000913	1636503	0	T	C	bias_e_value=3612650	bias_p_value=0.778312	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.4	fisher_strand_p_value=0.413105	frequency=4.527e-01	ks_quality_p_value=1	major_base=T	major_cov=42/39	major_frequency=5.473e-01	minor_base=C	minor_cov=30/37	new_cov=30/37	polymorphism_frequency=4.527e-01	polymorphism_score=196.8	prediction=polymorphism	ref_cov=42/39	total_cov=72/76
RA	616	.	NC_000913	1643679	0	A	T	consensus_score=180.7	frequency=1	major_base=T	major_cov=23/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/32
RA	617	.	NC_000913	1652331	0	T	C	consensus_score=384.6	frequency=1	major_base=C	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	618	.	NC_000913	1667795	0	C	T	bias_e_value=4543140	bias_p_value=0.978777	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.4	fisher_strand_p_value=0.801178	frequency=4.110e-01	ks_quality_p_value=1	major_base=C	major_cov=15/28	major_frequency=5.890e-01	minor_base=T	minor_cov=9/21	new_cov=9/21	polymorphism_frequency=4.110e-01	polymorphism_score=80.8	prediction=polymorphism	ref_cov=15/28	total_cov=24/49
RA	619	.	NC_000913	1721136	0	C	T	consensus_score=314.0	frequency=1	major_base=T	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	620	.	NC_000913	1776715	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=345.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999224	major_base=T	major_cov=48/53	major_frequency=9.902e-01	minor_base=.	minor_cov=0/1	new_cov=48/53	polymorphism_frequency=9.902e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=48/54
RA	621	.	NC_000913	1894839	0	T	C	consensus_score=328.6	frequency=1	major_base=C	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	622	.	NC_000913	1951203	0	A	T	bias_e_value=2239720	bias_p_value=0.482526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.8	fisher_strand_p_value=0.176441	frequency=2.794e-01	ks_quality_p_value=1	major_base=A	major_cov=36/62	major_frequency=7.206e-01	minor_base=T	minor_cov=19/19	new_cov=19/19	polymorphism_frequency=2.794e-01	polymorphism_score=138.3	prediction=polymorphism	ref_cov=36/62	total_cov=55/81
RA	623	.	NC_000913	1951320	0	G	A	bias_e_value=4587200	bias_p_value=0.988269	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.9	fisher_strand_p_value=0.850789	frequency=3.228e-01	ks_quality_p_value=1	major_base=G	major_cov=40/46	major_frequency=6.772e-01	minor_base=A	minor_cov=20/21	new_cov=20/21	polymorphism_frequency=3.228e-01	polymorphism_score=115.1	prediction=polymorphism	ref_cov=40/46	total_cov=60/67
RA	624	.	NC_000913	1951332	0	T	C	bias_e_value=2860190	bias_p_value=0.616201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.4	fisher_strand_p_value=0.707266	frequency=3.333e-01	ks_quality_p_value=0.37391	major_base=T	major_cov=43/39	major_frequency=6.667e-01	minor_base=C	minor_cov=20/21	new_cov=20/21	polymorphism_frequency=3.333e-01	polymorphism_score=120.2	prediction=polymorphism	ref_cov=43/39	total_cov=63/60
RA	625	.	NC_000913	1951335	0	C	T	bias_e_value=4255740	bias_p_value=0.916858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.8	fisher_strand_p_value=0.707266	frequency=3.333e-01	ks_quality_p_value=0.878024	major_base=C	major_cov=43/39	major_frequency=6.667e-01	minor_base=T	minor_cov=20/21	new_cov=20/21	polymorphism_frequency=3.333e-01	polymorphism_score=117.4	prediction=polymorphism	ref_cov=43/39	total_cov=63/60
RA	626	.	NC_000913	1951338	0	C	T	bias_e_value=2198100	bias_p_value=0.473561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.6	fisher_strand_p_value=0.703737	frequency=3.361e-01	ks_quality_p_value=0.243438	major_base=C	major_cov=43/38	major_frequency=6.639e-01	minor_base=T	minor_cov=20/21	new_cov=20/21	polymorphism_frequency=3.361e-01	polymorphism_score=120.2	prediction=polymorphism	ref_cov=43/38	total_cov=63/59
RA	627	.	NC_000913	1951386	0	C	T	bias_e_value=1681410	bias_p_value=0.362243	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.2	fisher_strand_p_value=0.167157	frequency=3.115e-01	ks_quality_p_value=0.683884	major_base=C	major_cov=52/32	major_frequency=6.885e-01	minor_base=T	minor_cov=18/20	new_cov=18/20	polymorphism_frequency=3.115e-01	polymorphism_score=105.2	prediction=polymorphism	ref_cov=52/32	total_cov=72/52
RA	628	.	NC_000913	1951387	0	A	C	bias_e_value=1667010	bias_p_value=0.359141	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.2	fisher_strand_p_value=0.116289	frequency=3.115e-01	ks_quality_p_value=0.970771	major_base=A	major_cov=53/31	major_frequency=6.885e-01	minor_base=C	minor_cov=18/20	new_cov=18/20	polymorphism_frequency=3.115e-01	polymorphism_score=109.5	prediction=polymorphism	ref_cov=53/31	total_cov=72/52
RA	629	.	NC_000913	1951412	0	A	G	bias_e_value=1261720	bias_p_value=0.271826	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.5	fisher_strand_p_value=0.171447	frequency=3.120e-01	ks_quality_p_value=0.443221	major_base=A	major_cov=54/32	major_frequency=6.880e-01	minor_base=G	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=3.120e-01	polymorphism_score=110.4	prediction=polymorphism	ref_cov=54/32	total_cov=73/52
RA	630	.	NC_000913	1951448	0	G	T	bias_e_value=2565330	bias_p_value=0.552676	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.2	fisher_strand_p_value=0.232397	frequency=2.868e-01	ks_quality_p_value=0.945428	major_base=G	major_cov=59/33	major_frequency=7.132e-01	minor_base=T	minor_cov=19/18	new_cov=19/18	polymorphism_frequency=2.868e-01	polymorphism_score=91.9	prediction=polymorphism	ref_cov=59/33	total_cov=78/51
RA	631	.	NC_000913	2040433	0	C	A	consensus_score=288.5	frequency=1	major_base=A	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	632	.	NC_000913	2120969	0	G	A	consensus_score=292.4	frequency=1	major_base=A	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	633	.	NC_000913	2142598	0	G	A	bias_e_value=3594450	bias_p_value=0.77439	consensus_score=396.8	fisher_strand_p_value=0.408696	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/68	major_frequency=9.913e-01	minor_base=C	minor_cov=1/0	new_cov=46/68	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/68
RA	634	.	NC_000913	2144907	0	G	T	bias_e_value=0.0162085	bias_p_value=3.49196e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.3	fisher_strand_p_value=1.47742e-10	frequency=3.158e-01	ks_quality_p_value=1	major_base=G	major_cov=42/23	major_frequency=6.842e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.158e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=42/23	total_cov=42/53
RA	635	.	NC_000913	2173363	0	C	.	consensus_score=309.2	frequency=1	major_base=.	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	636	.	NC_000913	2173364	0	C	.	consensus_score=309.2	frequency=1	major_base=.	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	637	.	NC_000913	2173448	0	C	T	consensus_score=242.1	frequency=1	major_base=T	major_cov=46/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/29
RA	638	.	NC_000913	2233609	0	C	T	bias_e_value=3410920	bias_p_value=0.734851	consensus_score=400.3	fisher_strand_p_value=0.366972	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=69/39	major_frequency=9.908e-01	minor_base=G	minor_cov=0/1	new_cov=69/39	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/40
RA	639	.	NC_000913	2242247	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=211.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/35	major_frequency=9.688e-01	minor_base=C	minor_cov=1/1	new_cov=27/35	polymorphism_frequency=9.688e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=28/36
RA	640	.	NC_000913	2247134	0	A	C	consensus_score=499.3	frequency=1	major_base=C	major_cov=44/90	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/90	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/90
RA	641	.	NC_000913	2288418	0	G	T	bias_e_value=6.48741e-05	bias_p_value=1.39765e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.0	fisher_strand_p_value=4.75816e-13	frequency=2.845e-01	ks_quality_p_value=1	major_base=G	major_cov=57/26	major_frequency=7.155e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.845e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=57/26	total_cov=57/59
RA	642	.	NC_000913	2304762	0	T	C	bias_e_value=1546880	bias_p_value=0.33326	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.9	fisher_strand_p_value=0.101307	frequency=3.889e-01	ks_quality_p_value=1	major_base=T	major_cov=6/5	major_frequency=6.111e-01	minor_base=C	minor_cov=7/0	new_cov=7/0	polymorphism_frequency=3.889e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=6/5	total_cov=13/5
RA	643	.	NC_000913	2391119	0	G	A	consensus_score=205.3	frequency=1	major_base=A	major_cov=32/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/25
RA	644	.	NC_000913	2392587	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=276.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=43/33	major_frequency=9.870e-01	minor_base=T	minor_cov=1/0	new_cov=43/33	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	645	.	NC_000913	2404402	0	G	A	consensus_score=247.4	frequency=1	major_base=A	major_cov=48/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/27
RA	646	.	NC_000913	2452389	0	G	A	consensus_score=221.1	frequency=1	major_base=A	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	647	.	NC_000913	2452390	0	G	A	consensus_score=220.0	frequency=1	major_base=A	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	648	.	NC_000913	2477265	0	A	C	bias_e_value=1.68967e-05	bias_p_value=3.64024e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.9	fisher_strand_p_value=1.18323e-13	frequency=2.927e-01	ks_quality_p_value=1	major_base=A	major_cov=9/49	major_frequency=7.073e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.927e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=9/49	total_cov=33/50
RA	649	.	NC_000913	2481608	0	A	G	consensus_score=458.4	frequency=1	major_base=G	major_cov=61/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/63
RA	650	.	NC_000913	2498392	0	A	C	bias_e_value=1339360	bias_p_value=0.288553	consensus_score=337.6	fisher_strand_p_value=0.0825878	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=62/40	major_frequency=9.444e-01	minor_base=A	minor_cov=6/0	new_cov=62/40	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=6/0	total_cov=68/40
RA	651	.	NC_000913	2514457	0	C	T	consensus_score=90.8	frequency=1	major_base=T	major_cov=9/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/21
RA	652	.	NC_000913	2546804	0	T	A	consensus_score=251.9	frequency=1	major_base=A	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	653	.	NC_000913	2577937	0	T	C	consensus_score=352.7	frequency=1	major_base=C	major_cov=58/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/38
RA	654	.	NC_000913	2587112	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=244.2	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/29	major_frequency=9.867e-01	minor_base=G	minor_cov=0/1	new_cov=45/29	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/30
RA	655	.	NC_000913	2745600	0	A	G	consensus_score=290.6	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	656	.	NC_000913	2767445	0	C	A	bias_e_value=1.8871e-08	bias_p_value=4.06558e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.3	fisher_strand_p_value=1.07647e-16	frequency=3.014e-01	ks_quality_p_value=1	major_base=C	major_cov=2/49	major_frequency=6.986e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.014e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=2/49	total_cov=24/49
RA	657	.	NC_000913	2774947	0	G	A	bias_e_value=3918080	bias_p_value=0.844113	consensus_score=448.8	fisher_strand_p_value=0.496468	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=66/65	major_frequency=9.850e-01	minor_base=C	minor_cov=2/0	new_cov=66/65	polymorphism_frequency=9.850e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=68/65
RA	658	.	NC_000913	2787591	0	A	G	consensus_score=393.1	frequency=1	major_base=G	major_cov=50/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	659	.	NC_000913	2817991	0	A	C	bias_e_value=2566260	bias_p_value=0.552876	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.7	fisher_strand_p_value=0.219847	frequency=2.281e-01	ks_quality_p_value=1	major_base=A	major_cov=18/26	major_frequency=7.719e-01	minor_base=C	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.281e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=18/26	total_cov=26/31
RA	660	.	NC_000913	2818406	0	C	A	bias_e_value=4027980	bias_p_value=0.86779	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.4	fisher_strand_p_value=0.532092	frequency=2.034e-01	ks_quality_p_value=0.99994	major_base=C	major_cov=25/22	major_frequency=7.966e-01	minor_base=A	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.034e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=25/22	total_cov=30/29
RA	661	.	NC_000913	2867455	0	G	A	consensus_score=315.1	frequency=1	major_base=A	major_cov=57/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/33
RA	662	.	NC_000913	2880635	0	T	C	bias_e_value=4636150	bias_p_value=0.998815	consensus_score=476.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.951715	major_base=C	major_cov=66/67	major_frequency=9.925e-01	minor_base=T	minor_cov=1/0	new_cov=66/67	polymorphism_frequency=9.925e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=68/67
RA	663	.	NC_000913	2895349	0	G	T	bias_e_value=12.0408	bias_p_value=2.59407e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.5	fisher_strand_p_value=1.55554e-07	frequency=2.692e-01	ks_quality_p_value=1	major_base=G	major_cov=36/21	major_frequency=7.308e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.692e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=36/21	total_cov=36/42
RA	664	.	NC_000913	2903887	0	G	A	bias_e_value=3033360	bias_p_value=0.653508	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.1	fisher_strand_p_value=0.328953	frequency=3.902e-01	ks_quality_p_value=0.892753	major_base=G	major_cov=37/63	major_frequency=6.098e-01	minor_base=A	minor_cov=29/35	new_cov=29/35	polymorphism_frequency=3.902e-01	polymorphism_score=184.8	prediction=polymorphism	ref_cov=37/63	total_cov=66/98
RA	665	.	NC_000913	2926772	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=348.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/50	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=53/50	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/50
RA	666	.	NC_000913	2947467	0	A	C	bias_e_value=1938780	bias_p_value=0.417693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.6	fisher_strand_p_value=0.146473	frequency=2.000e-01	ks_quality_p_value=0.96429	major_base=A	major_cov=15/29	major_frequency=8.000e-01	minor_base=C	minor_cov=1/10	new_cov=1/10	polymorphism_frequency=2.000e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=15/29	total_cov=16/39
RA	667	.	NC_000913	2990480	0	C	A	bias_e_value=4.28832e-05	bias_p_value=9.23877e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.5	fisher_strand_p_value=3.10003e-13	frequency=2.901e-01	ks_quality_p_value=1	major_base=C	major_cov=34/59	major_frequency=7.099e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.901e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=34/59	total_cov=72/59
RA	668	.	NC_000913	3025601	0	T	.	bias_e_value=4641610	bias_p_value=0.99999	consensus_score=598.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995511	major_base=.	major_cov=63/63	major_frequency=9.921e-01	minor_base=T	minor_cov=0/1	new_cov=63/63	polymorphism_frequency=9.921e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=0/1	total_cov=63/64
RA	669	.	NC_000913	3032307	0	C	T	bias_e_value=0.000153672	bias_p_value=3.31071e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.2	fisher_strand_p_value=1.16245e-12	frequency=2.843e-01	ks_quality_p_value=1	major_base=C	major_cov=20/53	major_frequency=7.157e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.843e-01	polymorphism_score=35.1	prediction=polymorphism	ref_cov=20/53	total_cov=49/53
RA	670	.	NC_000913	3070858	0	T	G	consensus_score=390.3	frequency=1	major_base=G	major_cov=55/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/51
RA	671	.	NC_000913	3115105	0	G	T	bias_e_value=0.777903	bias_p_value=1.67592e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.0	fisher_strand_p_value=8.56106e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=39/21	major_frequency=7.143e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.857e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=39/21	total_cov=39/45
RA	672	.	NC_000913	3207549	0	G	.	consensus_score=606.7	frequency=1	major_base=.	major_cov=54/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/73
RA	673	.	NC_000913	3213233	0	G	C	bias_e_value=3832310	bias_p_value=0.825635	consensus_score=452.5	fisher_strand_p_value=0.472	frequency=1	ks_quality_p_value=0.997938	major_base=C	major_cov=58/66	major_frequency=9.920e-01	minor_base=A	minor_cov=1/0	new_cov=58/66	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/66
RA	674	.	NC_000913	3252295	0	G	T	consensus_score=508.7	frequency=1	major_base=T	major_cov=61/95	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/95	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/95
RA	675	.	NC_000913	3275902	0	A	T	consensus_score=398.7	frequency=1	major_base=T	major_cov=74/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/44
RA	676	.	NC_000913	3296481	0	G	A	consensus_score=305.2	frequency=1	major_base=A	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	677	.	NC_000913	3329743	0	G	T	consensus_score=227.3	frequency=1	major_base=T	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	678	.	NC_000913	3386961	0	C	A	bias_e_value=3708.53	bias_p_value=0.000798968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.4	fisher_strand_p_value=7.62241e-05	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=33/23	major_frequency=7.000e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.000e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=33/23	total_cov=57/23
RA	679	.	NC_000913	3388041	0	T	G	consensus_score=276.2	frequency=1	major_base=G	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	680	.	NC_000913	3411689	0	G	T	consensus_score=385.7	frequency=1	major_base=T	major_cov=65/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/48
RA	681	.	NC_000913	3433900	0	C	T	bias_e_value=3973070	bias_p_value=0.855961	consensus_score=329.1	fisher_strand_p_value=0.513816	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/60	major_frequency=9.808e-01	minor_base=G	minor_cov=0/2	new_cov=42/60	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/62
RA	682	.	NC_000913	3474425	0	T	C	consensus_score=241.6	frequency=1	major_base=C	major_cov=37/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/31
RA	683	.	NC_000913	3486175	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=291.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999002	major_base=A	major_cov=49/40	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=49/40	polymorphism_frequency=9.889e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	684	.	NC_000913	3486502	0	C	T	consensus_score=319.3	frequency=1	major_base=T	major_cov=36/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/60
RA	685	.	NC_000913	3497106	0	G	A	bias_e_value=4639750	bias_p_value=0.99959	consensus_score=316.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971508	major_base=A	major_cov=38/53	major_frequency=9.891e-01	minor_base=G	minor_cov=0/1	new_cov=38/53	polymorphism_frequency=9.891e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=38/54
RA	686	.	NC_000913	3507249	0	C	T	consensus_score=329.8	frequency=1	major_base=T	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	687	.	NC_000913	3511466	0	C	T	consensus_score=299.2	frequency=1	major_base=T	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	688	.	NC_000913	3555047	0	G	T	bias_e_value=3773360	bias_p_value=0.812935	consensus_score=336.5	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/54	major_frequency=9.899e-01	minor_base=G	minor_cov=1/0	new_cov=44/54	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/55
RA	689	.	NC_000913	3555048	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=359.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/53	major_frequency=9.700e-01	minor_base=T	minor_cov=1/2	new_cov=44/53	polymorphism_frequency=9.700e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/2	total_cov=45/55
RA	690	.	NC_000913	3560362	0	G	A	consensus_score=294.0	frequency=1	major_base=A	major_cov=32/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/51
RA	691	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=333.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/48	major_frequency=9.794e-01	minor_base=A	minor_cov=1/1	new_cov=47/48	polymorphism_frequency=9.794e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	692	.	NC_000913	3623644	0	A	C	bias_e_value=2447470	bias_p_value=0.527285	consensus_score=465.9	fisher_strand_p_value=0.203371	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=56/70	major_frequency=9.844e-01	minor_base=A	minor_cov=2/0	new_cov=56/70	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=58/70
RA	693	.	NC_000913	3646970	0	G	T	consensus_score=280.9	frequency=1	major_base=T	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	694	.	NC_000913	3647428	0	C	T	consensus_score=358.1	frequency=1	major_base=T	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	695	.	NC_000913	3707947	0	C	A	bias_e_value=3990490	bias_p_value=0.859714	consensus_score=443.9	fisher_strand_p_value=0.519499	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=77/51	major_frequency=9.846e-01	minor_base=C	minor_cov=2/0	new_cov=77/51	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=79/51
RA	696	.	NC_000913	3719429	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=464.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/75	major_frequency=9.923e-01	minor_base=G	minor_cov=0/1	new_cov=54/75	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/76
RA	697	.	NC_000913	3721455	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=837.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=122/114	major_frequency=9.958e-01	minor_base=C	minor_cov=1/0	new_cov=122/114	polymorphism_frequency=9.958e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=124/114
RA	698	.	NC_000913	3725176	0	T	G	consensus_score=275.9	frequency=1	major_base=G	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	699	.	NC_000913	3729440	0	C	T	consensus_score=294.8	frequency=1	major_base=T	major_cov=56/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/33
RA	700	.	NC_000913	3729441	0	C	T	consensus_score=308.8	frequency=1	major_base=T	major_cov=56/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/33
RA	701	.	NC_000913	3730560	0	C	T	bias_e_value=3877530	bias_p_value=0.835377	consensus_score=314.1	fisher_strand_p_value=0.484211	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/45	major_frequency=9.895e-01	minor_base=G	minor_cov=0/1	new_cov=49/45	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	702	.	NC_000913	3741871	0	G	T	bias_e_value=0.000249016	bias_p_value=5.36482e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.3	fisher_strand_p_value=1.91737e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=46/22	major_frequency=6.667e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.333e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=46/22	total_cov=47/56
RA	703	.	NC_000913	3768435	0	C	A	bias_e_value=4.91673e-09	bias_p_value=1.05926e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=390.2	fisher_strand_p_value=2.70575e-17	frequency=2.428e-01	ks_quality_p_value=1	major_base=C	major_cov=41/90	major_frequency=7.572e-01	minor_base=A	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=2.428e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=41/90	total_cov=83/90
RA	704	.	NC_000913	3769744	0	T	C	bias_e_value=2809300	bias_p_value=0.605237	consensus_score=484.6	fisher_strand_p_value=0.256306	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=79/64	major_frequency=9.795e-01	minor_base=T	minor_cov=3/0	new_cov=79/64	polymorphism_frequency=9.795e-01	polymorphism_score=NA	prediction=consensus	ref_cov=3/0	total_cov=82/64
RA	705	.	NC_000913	3770539	0	C	T	bias_e_value=3913150	bias_p_value=0.843052	consensus_score=315.2	fisher_strand_p_value=0.494956	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/47	major_frequency=9.792e-01	minor_base=C	minor_cov=0/2	new_cov=47/47	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=47/49
RA	706	.	NC_000913	3773173	0	G	.	bias_e_value=3973380	bias_p_value=0.856026	consensus_score=445.3	fisher_strand_p_value=0.515885	frequency=1	ks_quality_p_value=0.996181	major_base=.	major_cov=57/39	major_frequency=9.796e-01	minor_base=G	minor_cov=2/0	new_cov=57/39	polymorphism_frequency=9.796e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=2/0	total_cov=59/39
RA	707	.	NC_000913	3773176	0	C	T	consensus_score=329.8	frequency=1	major_base=T	major_cov=59/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/39
RA	708	.	NC_000913	3815883	1	.	C	bias_e_value=2409180	bias_p_value=0.519034	consensus_score=323.3	fisher_strand_p_value=0.204744	frequency=1	ks_quality_p_value=0.968194	major_base=C	major_cov=39/49	major_frequency=9.778e-01	minor_base=.	minor_cov=2/0	new_cov=39/49	polymorphism_frequency=9.778e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/0	total_cov=41/49
RA	709	.	NC_000913	3817167	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=325.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/44	major_frequency=9.895e-01	minor_base=C	minor_cov=1/0	new_cov=50/44	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/44
RA	710	.	NC_000913	3866301	0	A	G	bias_e_value=3731730	bias_p_value=0.803965	consensus_score=493.6	fisher_strand_p_value=0.455882	frequency=1	ks_quality_p_value=0.972499	major_base=G	major_cov=74/61	major_frequency=9.926e-01	minor_base=A	minor_cov=0/1	new_cov=74/61	polymorphism_frequency=9.926e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=76/62
RA	711	.	NC_000913	3866311	0	G	A	consensus_score=485.2	frequency=1	major_base=A	major_cov=77/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/64
RA	712	.	NC_000913	3897907	0	G	A	consensus_score=456.1	frequency=1	major_base=A	major_cov=68/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/66
RA	713	.	NC_000913	3911533	0	C	A	bias_e_value=0.0641646	bias_p_value=1.38237e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.4	fisher_strand_p_value=6.22777e-10	frequency=3.694e-01	ks_quality_p_value=1	major_base=C	major_cov=34/36	major_frequency=6.306e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.694e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=34/36	total_cov=75/36
RA	714	.	NC_000913	3993531	0	T	C	consensus_score=367.5	frequency=1	major_base=C	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	715	.	NC_000913	4037496	0	A	T	bias_e_value=4595900	bias_p_value=0.990143	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.3	fisher_strand_p_value=0.878816	frequency=4.138e-01	ks_quality_p_value=0.98191	major_base=A	major_cov=54/48	major_frequency=5.862e-01	minor_base=T	minor_cov=39/33	new_cov=39/33	polymorphism_frequency=4.138e-01	polymorphism_score=282.5	prediction=polymorphism	ref_cov=54/48	total_cov=94/81
RA	716	.	NC_000913	4143988	0	G	A	consensus_score=344.5	frequency=1	major_base=A	major_cov=33/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/62
RA	717	.	NC_000913	4148224	0	G	A	consensus_score=263.5	frequency=1	major_base=A	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	718	.	NC_000913	4165712	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=300.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/40	major_frequency=9.892e-01	minor_base=C	minor_cov=1/0	new_cov=52/40	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/40
RA	719	.	NC_000913	4180208	0	C	G	consensus_score=289.4	frequency=1	major_base=G	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	720	.	NC_000913	4193996	0	T	G	consensus_score=231.5	frequency=1	major_base=G	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	721	.	NC_000913	4201066	0	G	A	consensus_score=300.2	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	722	.	NC_000913	4202911	0	G	A	consensus_score=281.4	frequency=1	major_base=A	major_cov=40/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	723	.	NC_000913	4204541	0	G	A	consensus_score=301.7	frequency=1	major_base=A	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	724	.	NC_000913	4208132	0	G	A	consensus_score=232.1	frequency=1	major_base=A	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	725	.	NC_000913	4217676	0	G	A	bias_e_value=3957090	bias_p_value=0.852517	consensus_score=302.8	fisher_strand_p_value=0.508682	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/50	major_frequency=9.775e-01	minor_base=G	minor_cov=0/2	new_cov=37/50	polymorphism_frequency=9.775e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=37/52
RA	726	.	NC_000913	4223638	0	T	C	bias_e_value=3919430	bias_p_value=0.844405	consensus_score=375.8	fisher_strand_p_value=0.496885	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=55/51	major_frequency=9.815e-01	minor_base=A	minor_cov=2/0	new_cov=55/51	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/51
RA	727	.	NC_000913	4227849	0	G	A	consensus_score=292.6	frequency=1	major_base=A	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	728	.	NC_000913	4236257	0	G	A	consensus_score=252.1	frequency=1	major_base=A	major_cov=53/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/24
RA	729	.	NC_000913	4241458	0	G	A	consensus_score=254.0	frequency=1	major_base=A	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	730	.	NC_000913	4241875	0	G	T	bias_e_value=0.00305315	bias_p_value=6.57773e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.8	fisher_strand_p_value=2.59211e-11	frequency=2.700e-01	ks_quality_p_value=1	major_base=G	major_cov=51/22	major_frequency=7.300e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.700e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=51/22	total_cov=51/49
RA	731	.	NC_000913	4243075	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=171.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/30	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=22/30	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/31
RA	732	.	NC_000913	4273339	0	C	T	bias_e_value=3685720	bias_p_value=0.794053	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.7	fisher_strand_p_value=0.512631	frequency=5.181e-01	ks_quality_p_value=0.841465	major_base=T	major_cov=18/25	major_frequency=5.181e-01	minor_base=C	minor_cov=20/20	new_cov=18/25	polymorphism_frequency=5.181e-01	polymorphism_score=122.7	prediction=polymorphism	ref_cov=20/20	total_cov=38/45
RA	733	.	NC_000913	4274290	0	C	T	consensus_score=343.6	frequency=1	major_base=T	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	734	.	NC_000913	4288777	0	C	T	consensus_score=309.0	frequency=1	major_base=T	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	735	.	NC_000913	4296268	0	T	C	bias_e_value=3723800	bias_p_value=0.802258	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.0	fisher_strand_p_value=0.441252	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=16/12	major_frequency=7.778e-01	minor_base=C	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=2.222e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=16/12	total_cov=22/14
RA	736	.	NC_000913	4296380	1	.	C	bias_e_value=4641010	bias_p_value=0.999862	consensus_score=221.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983459	major_base=C	major_cov=36/35	major_frequency=9.342e-01	minor_base=T	minor_cov=3/2	new_cov=36/35	polymorphism_frequency=9.342e-01	polymorphism_score=5.0	prediction=consensus	ref_cov=1/0	total_cov=40/37
RA	737	.	NC_000913	4296380	2	.	G	bias_e_value=4637790	bias_p_value=0.999168	consensus_score=257.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.95949	major_base=G	major_cov=39/37	major_frequency=9.870e-01	minor_base=.	minor_cov=1/0	new_cov=39/37	polymorphism_frequency=9.870e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/0	total_cov=40/37
RA	738	.	NC_000913	4307052	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=190.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/34	major_frequency=9.821e-01	minor_base=C	minor_cov=0/1	new_cov=21/34	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/35
RA	739	.	NC_000913	4307221	0	T	C	bias_e_value=897119	bias_p_value=0.193276	consensus_score=101.9	fisher_strand_p_value=0.0478424	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/21	major_frequency=8.810e-01	minor_base=A	minor_cov=5/0	new_cov=16/21	polymorphism_frequency=8.810e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	740	.	NC_000913	4325644	0	C	T	consensus_score=274.6	frequency=1	major_base=T	major_cov=33/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/53
RA	741	.	NC_000913	4325939	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=39.9	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=10/5	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=10/5	polymorphism_frequency=9.375e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	742	.	NC_000913	4325941	1	.	T	bias_e_value=4641490	bias_p_value=0.999965	consensus_score=36.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991701	major_base=T	major_cov=10/5	major_frequency=9.375e-01	minor_base=.	minor_cov=1/0	new_cov=10/5	polymorphism_frequency=9.375e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/0	total_cov=11/5
RA	743	.	NC_000913	4325948	0	A	G	consensus_score=40.1	deleted=1	frequency=1	major_base=G	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	744	.	NC_000913	4325964	0	T	C	consensus_score=23.4	deleted=1	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	745	.	NC_000913	4325965	0	A	G	consensus_score=22.4	deleted=1	frequency=1	major_base=G	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	746	.	NC_000913	4325967	0	A	G	consensus_score=23.4	deleted=1	frequency=1	major_base=G	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	747	.	NC_000913	4326222	0	A	G	consensus_score=20.5	deleted=1	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	748	.	NC_000913	4326247	0	C	T	consensus_score=42.0	deleted=1	frequency=1	major_base=T	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	749	.	NC_000913	4331890	0	C	T	consensus_score=311.2	frequency=1	major_base=T	major_cov=43/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/50
RA	750	.	NC_000913	4338117	1	.	A	bias_e_value=4641650	bias_p_value=1	consensus_score=421.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=56/67	major_frequency=9.111e-01	minor_base=.	minor_cov=5/7	new_cov=56/67	polymorphism_frequency=9.111e-01	polymorphism_score=36.8	prediction=consensus	ref_cov=5/7	total_cov=61/74
RA	751	.	NC_000913	4437890	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=521.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=67/82	major_frequency=9.933e-01	minor_base=C	minor_cov=0/1	new_cov=67/82	polymorphism_frequency=9.933e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=67/83
RA	752	.	NC_000913	4447046	0	A	T	consensus_score=306.0	frequency=1	major_base=T	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	753	.	NC_000913	4473900	0	C	T	consensus_score=226.4	frequency=1	major_base=T	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	754	.	NC_000913	4475493	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=506.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=62/78	major_frequency=9.929e-01	minor_base=T	minor_cov=0/1	new_cov=62/78	polymorphism_frequency=9.929e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=62/79
RA	755	.	NC_000913	4476605	0	G	A	consensus_score=327.1	frequency=1	major_base=A	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	756	.	NC_000913	4489016	0	C	T	consensus_score=373.1	frequency=1	major_base=T	major_cov=68/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/39
RA	757	.	NC_000913	4510238	0	T	G	bias_e_value=331.195	bias_p_value=7.13529e-05	consensus_score=376.3	fisher_strand_p_value=5.43758e-06	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=69/38	major_frequency=8.917e-01	minor_base=T	minor_cov=0/13	new_cov=69/38	polymorphism_frequency=8.917e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/13	total_cov=69/52
RA	758	.	NC_000913	4532409	0	T	G	consensus_score=230.1	frequency=1	major_base=G	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	759	.	NC_000913	4540411	0	C	A	bias_e_value=1.10557e-06	bias_p_value=2.38185e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.8	fisher_strand_p_value=7.09314e-15	frequency=3.309e-01	ks_quality_p_value=1	major_base=C	major_cov=35/58	major_frequency=6.691e-01	minor_base=A	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=3.309e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=35/58	total_cov=81/58
RA	760	.	NC_000913	4546601	0	C	T	bias_e_value=3889570	bias_p_value=0.837971	consensus_score=419.5	fisher_strand_p_value=0.487805	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/59	major_frequency=9.919e-01	minor_base=G	minor_cov=0/1	new_cov=63/59	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/60
RA	761	.	NC_000913	4636925	0	G	C	consensus_score=302.1	frequency=1	major_base=C	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	762	.	NC_000913	4638240	0	G	A	consensus_score=347.9	frequency=1	major_base=A	major_cov=59/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/45
MC	763	.	NC_000913	257908	258683	766	0	left_inside_cov=0	left_outside_cov=112	right_inside_cov=1	right_outside_cov=113
MC	764	.	NC_000913	506776	517161	0	0	left_inside_cov=19	left_outside_cov=60	right_inside_cov=1	right_outside_cov=92
MC	765	.	NC_000913	574804	578257	986	146	left_inside_cov=29	left_outside_cov=31	right_inside_cov=29	right_outside_cov=31
MC	766	.	NC_000913	1196300	1211463	0	0	left_inside_cov=28	left_outside_cov=31	right_inside_cov=29	right_outside_cov=30
MC	767	.	NC_000913	1399594	1429027	0	0	left_inside_cov=2	left_outside_cov=678	right_inside_cov=29	right_outside_cov=30
MC	768	.	NC_000913	1429833	1459405	0	0	left_inside_cov=29	left_outside_cov=30	right_inside_cov=0	right_outside_cov=84
MC	769	.	NC_000913	1757511	1757552	0	0	left_inside_cov=0	left_outside_cov=93	right_inside_cov=3	right_outside_cov=96
MC	770	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=91	right_inside_cov=0	right_outside_cov=98
MC	771	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=83	right_inside_cov=3	right_outside_cov=86
MC	772	.	NC_000913	3130343	3131468	1003	0	left_inside_cov=29	left_outside_cov=30	right_inside_cov=3	right_outside_cov=74
MC	773	.	NC_000913	3423884	3424482	349	244	left_inside_cov=29	left_outside_cov=30	right_inside_cov=27	right_outside_cov=30
MC	774	.	NC_000913	3535343	3535347	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=85
MC	775	.	NC_000913	3890274	3890309	0	0	left_inside_cov=0	left_outside_cov=142	right_inside_cov=0	right_outside_cov=141
MC	776	.	NC_000913	4325909	4326299	0	0	left_inside_cov=29	left_outside_cov=30	right_inside_cov=28	right_outside_cov=30
JC	777	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=69	coverage_plus=67	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=234	max_min_left=149	max_min_left_minus=149	max_min_left_plus=144	max_min_right=144	max_min_right_minus=144	max_min_right_plus=134	max_pos_hash_score=590	max_right=298	max_right_minus=287	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.50	new_junction_read_count=137	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=136
JC	778	.	NC_000913	32017	-1	NC_000913	32588	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.765e-02	junction_possible_overlap_registers=284	key=NC_000913__32017__-1__NC_000913__32578__1__10____300__300__0__0	max_left=84	max_left_minus=84	max_left_plus=84	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=82	max_min_right_plus=82	max_pos_hash_score=570	max_right=82	max_right_minus=82	max_right_plus=82	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.765e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	779	.	NC_000913	186737	-1	NC_000913	186996	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.335e-02	junction_possible_overlap_registers=285	key=NC_000913__186737__-1__NC_000913__186987__1__9____300__300__0__0	max_left=183	max_left_minus=121	max_left_plus=183	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=572	max_right=151	max_right_minus=151	max_right_plus=151	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.335e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=3
JC	780	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=52	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=282	max_left_minus=273	max_left_plus=282	max_min_left=143	max_min_left_minus=117	max_min_left_plus=143	max_min_right=144	max_min_right_minus=140	max_min_right_plus=144	max_pos_hash_score=574	max_right=290	max_right_minus=290	max_right_plus=274	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.26	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=109
JC	781	.	NC_000913	270541	1	NC_000913	1034135	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.618e-01	junction_possible_overlap_registers=294	key=NC_000913__270541__1__NC_000913__1034135__-1__0____300__300__1__0	max_left=243	max_left_minus=243	max_left_plus=169	max_min_left=82	max_min_left_minus=82	max_min_left_plus=80	max_min_right=130	max_min_right_minus=74	max_min_right_plus=130	max_pos_hash_score=590	max_right=291	max_right_minus=291	max_right_plus=266	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.12	new_junction_read_count=11	polymorphism_frequency=1.618e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=11
JC	782	.	NC_000913	270541	1	NC_000913	2042478	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.528e-01	junction_possible_overlap_registers=294	key=NC_000913__270541__1__NC_000913__2042478__-1__0____300__300__1__0	max_left=275	max_left_minus=275	max_left_plus=264	max_min_left=139	max_min_left_minus=139	max_min_left_plus=78	max_min_right=112	max_min_right_minus=112	max_min_right_plus=74	max_pos_hash_score=590	max_right=298	max_right_minus=286	max_right_plus=298	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.24	new_junction_read_count=22	polymorphism_frequency=1.528e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=22
JC	783	.	NC_000913	271761	-1	NC_000913	1034134	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.094e-01	junction_possible_overlap_registers=292	key=NC_000913__271761__-1__NC_000913__1034132__1__2____300__300__0__0	max_left=85	max_left_minus=82	max_left_plus=85	max_min_left=85	max_min_left_minus=82	max_min_left_plus=85	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=292	max_right_minus=292	max_right_plus=247	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=1.094e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=7
JC	784	.	NC_000913	271761	-1	NC_000913	1084084	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.504e-02	junction_possible_overlap_registers=292	key=NC_000913__271763__-1__NC_000913__1084084__1__2____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=27	max_min_left=111	max_min_left_minus=111	max_min_left_plus=27	max_min_right=124	max_min_right_minus=124	max_min_right_plus=0	max_pos_hash_score=586	max_right=294	max_right_minus=190	max_right_plus=294	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.504e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=6
JC	785	.	NC_000913	271761	-1	NC_000913	1995729	1	0	alignment_overlap=2	coverage_minus=8	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.782e-01	junction_possible_overlap_registers=292	key=NC_000913__271763__-1__NC_000913__1995729__1__2____300__300__0__0	max_left=140	max_left_minus=140	max_left_plus=126	max_min_left=140	max_min_left_minus=140	max_min_left_plus=126	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=275	max_right_minus=275	max_right_plus=270	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.15	new_junction_read_count=14	polymorphism_frequency=1.782e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=13
JC	786	.	NC_000913	271761	-1	NC_000913	2042477	1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.087e-01	junction_possible_overlap_registers=293	key=NC_000913__271761__-1__NC_000913__2042476__1__1____300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=116	max_min_left=129	max_min_left_minus=129	max_min_left_plus=116	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=266	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.087e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=123	side_2_redundant=0	total_non_overlap_reads=14
JC	787	.	NC_000913	274216	-1	NC_000913	274283	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.288e-01	junction_possible_overlap_registers=284	key=NC_000913__274216__-1__NC_000913__274273__1__10____300__300__0__1	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.288e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.23	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	788	.	NC_000913	274216	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.072e-02	junction_possible_overlap_registers=284	key=NC_000913__274216__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=242	max_right_minus=161	max_right_plus=242	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.072e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.23	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	789	.	NC_000913	275149	-1	NC_000913	503127	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=2.157e-01	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__503127__-1__0____300__300__1__0	max_left=282	max_left_minus=282	max_left_plus=156	max_min_left=130	max_min_left_minus=130	max_min_left_plus=88	max_min_right=144	max_min_right_minus=134	max_min_right_plus=144	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=288	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.24	new_junction_read_count=22	polymorphism_frequency=2.157e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=22
JC	790	.	NC_000913	275149	-1	NC_000913	506775	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=6.833e-01	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__506775__-1__0____300__300__1__0	max_left=282	max_left_minus=282	max_left_plus=203	max_min_left=146	max_min_left_minus=146	max_min_left_plus=123	max_min_right=139	max_min_right_minus=139	max_min_right_plus=97	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=293	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.45	new_junction_read_count=41	polymorphism_frequency=6.833e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.21	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=19	side_2_redundant=0	total_non_overlap_reads=41
JC	791	.	NC_000913	275149	-1	NC_000913	507163	-1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__275149__-1__NC_000913__507164__-1__1____300__300__1__0	max_left=260	max_left_minus=253	max_left_plus=260	max_min_left=129	max_min_left_minus=129	max_min_left_plus=49	max_min_right=145	max_min_right_minus=143	max_min_right_plus=145	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=250	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.20	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18
JC	792	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=64	coverage_plus=31	flanking_left=300	flanking_right=300	frequency=4.874e-01	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__579184__1__0____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=277	max_min_left=146	max_min_left_minus=146	max_min_left_plus=117	max_min_right=147	max_min_right_minus=138	max_min_right_plus=147	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=97	polymorphism_frequency=4.874e-01	pos_hash_score=62	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=95
JC	793	.	NC_000913	280111	-1	NC_000913	1034134	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.094e-01	junction_possible_overlap_registers=292	key=NC_000913__280111__-1__NC_000913__1034132__1__2____300__300__0__0	max_left=85	max_left_minus=82	max_left_plus=85	max_min_left=85	max_min_left_minus=82	max_min_left_plus=85	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=292	max_right_minus=292	max_right_plus=247	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=1.094e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=7
JC	794	.	NC_000913	280111	-1	NC_000913	1084084	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.451e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__1084084__1__0____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=27	max_min_left=111	max_min_left_minus=111	max_min_left_plus=27	max_min_right=126	max_min_right_minus=126	max_min_right_plus=0	max_pos_hash_score=590	max_right=296	max_right_minus=192	max_right_plus=296	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.451e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=6
JC	795	.	NC_000913	280111	-1	NC_000913	1995729	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.975e-01	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__1995729__1__0____300__300__0__0	max_left=179	max_left_minus=179	max_left_plus=126	max_min_left=140	max_min_left_minus=140	max_min_left_plus=126	max_min_right=121	max_min_right_minus=121	max_min_right_plus=0	max_pos_hash_score=590	max_right=277	max_right_minus=277	max_right_plus=272	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.17	new_junction_read_count=16	polymorphism_frequency=1.975e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=15
JC	796	.	NC_000913	280111	-1	NC_000913	2042477	1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.090e-01	junction_possible_overlap_registers=292	key=NC_000913__280112__-1__NC_000913__2042476__1__2____300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=116	max_min_left=129	max_min_left_minus=129	max_min_left_plus=116	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=265	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.090e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=1	side_2_possible_overlap_registers=293	side_2_read_count=123	side_2_redundant=0	total_non_overlap_reads=14
JC	797	.	NC_000913	354661	-1	NC_000913	354756	1	0	alignment_overlap=25	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=8.047e-02	junction_possible_overlap_registers=269	key=NC_000913__354661__-1__NC_000913__354731__1__25____300__300__0__0	max_left=246	max_left_minus=140	max_left_plus=246	max_min_left=74	max_min_left_minus=17	max_min_left_plus=74	max_min_right=135	max_min_right_minus=135	max_min_right_plus=29	max_pos_hash_score=540	max_right=258	max_right_minus=258	max_right_plus=232	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.047e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=6
JC	798	.	NC_000913	381260	1	NC_000913	1186823	-1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=12	flanking_left=300	flanking_right=300	frequency=3.093e-01	junction_possible_overlap_registers=293	key=NC_000913__381260__1__NC_000913__1186824__-1__1____300__300__1__0	max_left=296	max_left_minus=233	max_left_plus=296	max_min_left=137	max_min_left_minus=136	max_min_left_plus=137	max_min_right=139	max_min_right_minus=139	max_min_right_plus=73	max_pos_hash_score=588	max_right=291	max_right_minus=271	max_right_plus=291	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.33	new_junction_read_count=30	polymorphism_frequency=3.093e-01	pos_hash_score=23	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=29
JC	799	.	NC_000913	503127	-1	NC_000913	2067353	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.111e-01	junction_possible_overlap_registers=294	key=NC_000913__503127__-1__NC_000913__2067353__-1__0____300__300__0__0	max_left=297	max_left_minus=288	max_left_plus=297	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=37	max_min_right_minus=12	max_min_right_plus=37	max_pos_hash_score=590	max_right=37	max_right_minus=12	max_right_plus=37	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.111e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=10
JC	800	.	NC_000913	517162	1	NC_000913	574591	1	0	alignment_overlap=1	coverage_minus=49	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__517161__1__NC_000913__574591__1__1____300__300__0__1	max_left=297	max_left_minus=285	max_left_plus=297	max_min_left=142	max_min_left_minus=142	max_min_left_plus=135	max_min_right=148	max_min_right_minus=148	max_min_right_plus=140	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=283	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.00	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=87
JC	801	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=17	flanking_left=300	flanking_right=300	frequency=3.026e-01	junction_possible_overlap_registers=292	key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0	max_left=225	max_left_minus=218	max_left_plus=225	max_min_left=147	max_min_left_minus=145	max_min_left_plus=147	max_min_right=147	max_min_right_minus=147	max_min_right_plus=143	max_pos_hash_score=586	max_right=176	max_right_minus=176	max_right_plus=160	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.56	new_junction_read_count=51	polymorphism_frequency=3.026e-01	pos_hash_score=22	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.40	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=34
JC	802	.	NC_000913	574852	-1	NC_000913	574919	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.545e-01	junction_possible_overlap_registers=284	key=NC_000913__574852__-1__NC_000913__574909__1__10____300__300__0__1	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.545e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	803	.	NC_000913	574852	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.244e-02	junction_possible_overlap_registers=284	key=NC_000913__574852__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=242	max_right_minus=161	max_right_plus=242	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.244e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	804	.	NC_000913	688112	-1	NC_000913	688179	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.735e-01	junction_possible_overlap_registers=284	key=NC_000913__688112__-1__NC_000913__688169__1__10____300__300__0__1	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.735e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	805	.	NC_000913	688112	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.232e-02	junction_possible_overlap_registers=284	key=NC_000913__688112__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=242	max_right_minus=161	max_right_plus=242	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.232e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	806	.	NC_000913	696469	-1	NC_000913	696802	1	-6	alignment_overlap=-6	coverage_minus=8	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=2.170e-01	junction_possible_overlap_registers=288	key=NC_000913__696469__-1__NC_000913__696802__1__-6__TAGAAT__300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=277	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=124	max_min_right_minus=109	max_min_right_plus=124	max_pos_hash_score=578	max_right=124	max_right_minus=109	max_right_plus=124	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.21	new_junction_read_count=19	polymorphism_frequency=2.170e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=TAGAAT
JC	807	.	NC_000913	696830	-1	NC_000913	696940	1	0	alignment_overlap=77	coverage_minus=6	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=2.450e-01	junction_possible_overlap_registers=217	key=NC_000913__696830__-1__NC_000913__696863__1__77____300__300__0__0	max_left=220	max_left_minus=197	max_left_plus=220	max_min_left=100	max_min_left_minus=100	max_min_left_plus=0	max_min_right=94	max_min_right_minus=55	max_min_right_plus=94	max_pos_hash_score=436	max_right=197	max_right_minus=197	max_right_plus=94	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.19	new_junction_read_count=13	polymorphism_frequency=2.450e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=77	side_1_possible_overlap_registers=294	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=13
JC	808	.	NC_000913	732239	-1	NC_000913	732420	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.871e-02	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__732408__1__12____300__300__0__0	max_left=257	max_left_minus=157	max_left_plus=257	max_min_left=107	max_min_left_minus=107	max_min_left_plus=0	max_min_right=130	max_min_right_minus=130	max_min_right_plus=29	max_pos_hash_score=566	max_right=172	max_right_minus=172	max_right_plus=29	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.871e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=3
JC	809	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=2.174e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=257	max_left_minus=191	max_left_plus=257	max_min_left=140	max_min_left_minus=140	max_min_left_plus=83	max_min_right=127	max_min_right_minus=97	max_min_right_plus=127	max_pos_hash_score=566	max_right=201	max_right_minus=148	max_right_plus=201	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=2.174e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=6
JC	810	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.899e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=257	max_left_minus=191	max_left_plus=257	max_min_left=140	max_min_left_minus=140	max_min_left_plus=83	max_min_right=127	max_min_right_minus=97	max_min_right_plus=127	max_pos_hash_score=566	max_right=201	max_right_minus=148	max_right_plus=201	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=1.899e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=6
JC	811	.	NC_000913	780554	1	NC_000913	781016	-1	-33	alignment_overlap=-33	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.454e-02	junction_possible_overlap_registers=261	key=NC_000913__780554__1__NC_000913__781016__-1__-33__CTTGCGGGATTATGCTGCCTTAATCATTCAGGA__300__300__0__0	max_left=77	max_left_minus=77	max_left_plus=76	max_min_left=77	max_min_left_minus=77	max_min_left_plus=76	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=524	max_right=241	max_right_minus=241	max_right_plus=170	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.454e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CTTGCGGGATTATGCTGCCTTAATCATTCAGGA
JC	812	.	NC_000913	781016	-1	NC_000913	2521253	1	-33	alignment_overlap=-33	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.691e-02	junction_possible_overlap_registers=261	key=NC_000913__781016__-1__NC_000913__2521253__1__-33__TCCTGAATGATTAAGGCAGCATAATCCCGCAAG__300__300__0__0	max_left=241	max_left_minus=170	max_left_plus=241	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=76	max_min_right_plus=77	max_pos_hash_score=524	max_right=77	max_right_minus=76	max_right_plus=77	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.691e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.45	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=TCCTGAATGATTAAGGCAGCATAATCCCGCAAG
JC	813	.	NC_000913	781282	-1	NC_000913	781772	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.081e-01	junction_possible_overlap_registers=293	key=NC_000913__781282__-1__NC_000913__781772__1__-1__C__300__300__0__0	max_left=85	max_left_minus=85	max_left_plus=68	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=80	max_min_right_minus=80	max_min_right_plus=0	max_pos_hash_score=588	max_right=249	max_right_minus=249	max_right_plus=249	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.081e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=C
JC	814	.	NC_000913	855204	-1	NC_000913	855560	1	-1	alignment_overlap=-1	coverage_minus=7	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=1.560e-01	junction_possible_overlap_registers=293	key=NC_000913__855204__-1__NC_000913__855560__1__-1__A__300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=0	max_min_left=146	max_min_left_minus=146	max_min_left_plus=0	max_min_right=149	max_min_right_minus=149	max_min_right_plus=0	max_pos_hash_score=588	max_right=285	max_right_minus=285	max_right_plus=0	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=1.560e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.40	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=A
JC	815	.	NC_000913	855208	-1	NC_000913	855563	1	0	alignment_overlap=9	coverage_minus=21	coverage_plus=18	flanking_left=300	flanking_right=300	frequency=5.438e-01	junction_possible_overlap_registers=285	key=NC_000913__855208__-1__NC_000913__855554__1__9____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=281	max_min_left=144	max_min_left_minus=144	max_min_left_plus=142	max_min_right=139	max_min_right_minus=139	max_min_right_plus=129	max_pos_hash_score=572	max_right=286	max_right_minus=286	max_right_plus=286	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.50	new_junction_read_count=44	polymorphism_frequency=5.438e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=39
JC	816	.	NC_000913	1034134	1	NC_000913	4507459	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=12	flanking_left=300	flanking_right=300	frequency=2.297e-01	junction_possible_overlap_registers=292	key=NC_000913__1034132__1__NC_000913__4507459__1__2____300__300__0__1	max_left=292	max_left_minus=247	max_left_plus=292	max_min_left=118	max_min_left_minus=118	max_min_left_plus=94	max_min_right=85	max_min_right_minus=85	max_min_right_plus=82	max_pos_hash_score=586	max_right=287	max_right_minus=180	max_right_plus=287	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.19	new_junction_read_count=17	polymorphism_frequency=2.297e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	817	.	NC_000913	1084084	1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.447e-01	junction_possible_overlap_registers=294	key=NC_000913__1084084__1__NC_000913__1470516__-1__0____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=192	max_min_left=126	max_min_left_minus=70	max_min_left_plus=126	max_min_right=111	max_min_right_minus=27	max_min_right_plus=111	max_pos_hash_score=590	max_right=284	max_right_minus=230	max_right_plus=284	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.12	new_junction_read_count=11	polymorphism_frequency=1.447e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	818	.	NC_000913	1084085	-1	NC_000913	1469296	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.410e-01	junction_possible_overlap_registers=292	key=NC_000913__1084087__-1__NC_000913__1469296__1__2____300__300__0__1	max_left=268	max_left_minus=268	max_left_plus=218	max_min_left=144	max_min_left_minus=93	max_min_left_plus=144	max_min_right=144	max_min_right_minus=144	max_min_right_plus=127	max_pos_hash_score=586	max_right=207	max_right_minus=204	max_right_plus=207	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.12	new_junction_read_count=11	polymorphism_frequency=1.410e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	819	.	NC_000913	1097040	-1	NC_000913	1097584	1	0	alignment_overlap=80	coverage_minus=20	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=5.701e-01	junction_possible_overlap_registers=214	key=NC_000913__1097040__-1__NC_000913__1097504__1__80____300__300__0__0	max_left=190	max_left_minus=143	max_left_plus=190	max_min_left=106	max_min_left_minus=106	max_min_left_plus=27	max_min_right=109	max_min_right_minus=109	max_min_right_plus=63	max_pos_hash_score=430	max_right=218	max_right_minus=218	max_right_plus=191	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.44	new_junction_read_count=29	polymorphism_frequency=5.701e-01	pos_hash_score=22	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=80	side_1_possible_overlap_registers=294	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=28
JC	820	.	NC_000913	1186819	1	NC_000913	1651548	-1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=15	flanking_left=300	flanking_right=300	frequency=2.235e-01	junction_possible_overlap_registers=293	key=NC_000913__1186818__1__NC_000913__1651548__-1__1____300__300__0__1	max_left=259	max_left_minus=182	max_left_plus=259	max_min_left=116	max_min_left_minus=17	max_min_left_plus=116	max_min_right=148	max_min_right_minus=142	max_min_right_plus=148	max_pos_hash_score=588	max_right=279	max_right_minus=279	max_right_plus=270	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.21	new_junction_read_count=19	polymorphism_frequency=2.235e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	821	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.180e-02	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=275	max_left_minus=163	max_left_plus=275	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=5	max_min_right_minus=1	max_min_right_plus=5	max_pos_hash_score=550	max_right=276	max_right_minus=1	max_right_plus=276	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.180e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	822	.	NC_000913	1287329	-1	NC_000913	1287624	1	0	alignment_overlap=87	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=2.138e-01	junction_possible_overlap_registers=207	key=NC_000913__1287329__-1__NC_000913__1287537__1__87____300__300__0__0	max_left=188	max_left_minus=188	max_left_plus=170	max_min_left=92	max_min_left_minus=92	max_min_left_plus=78	max_min_right=101	max_min_right_minus=101	max_min_right_plus=33	max_pos_hash_score=416	max_right=209	max_right_minus=139	max_right_plus=209	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.19	new_junction_read_count=12	polymorphism_frequency=2.138e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=87	side_1_possible_overlap_registers=294	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=11
JC	823	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=46	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=146	max_min_left_minus=127	max_min_left_plus=146	max_min_right=140	max_min_right_minus=134	max_min_right_plus=140	max_pos_hash_score=582	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.23	new_junction_read_count=111	polymorphism_frequency=9.783e-01	pos_hash_score=60	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	824	.	NC_000913	1300365	-1	NC_000913	1300432	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__1300375__-1__NC_000913__1300432__1__10____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=10	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	825	.	NC_000913	1300432	1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.122e-02	junction_possible_overlap_registers=284	key=NC_000913__1300432__1__NC_000913__2066477__1__10____300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=242	max_right_minus=161	max_right_plus=242	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=6.122e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	826	.	NC_000913	1390324	-1	NC_000913	1396044	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=3.016e-01	junction_possible_overlap_registers=294	key=NC_000913__1390324__-1__NC_000913__1396044__1__0____300__300__0__1	max_left=296	max_left_minus=283	max_left_plus=296	max_min_left=148	max_min_left_minus=105	max_min_left_plus=148	max_min_right=146	max_min_right_minus=138	max_min_right_plus=146	max_pos_hash_score=590	max_right=268	max_right_minus=195	max_right_plus=268	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.21	new_junction_read_count=19	polymorphism_frequency=3.016e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	827	.	NC_000913	1390324	-1	NC_000913	2067353	-1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.412e-02	junction_possible_overlap_registers=291	key=NC_000913__1390324__-1__NC_000913__2067356__-1__3____300__300__0__0	max_left=293	max_left_minus=280	max_left_plus=293	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=19	max_min_right_minus=19	max_min_right_plus=6	max_pos_hash_score=584	max_right=19	max_right_minus=19	max_right_plus=6	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=8.412e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=3	side_1_possible_overlap_registers=294	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=4
JC	828	.	NC_000913	1396019	1	NC_000913	1399593	-1	0	alignment_overlap=1	coverage_minus=359	coverage_plus=298	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1396019__1__NC_000913__1399594__-1__1____300__300__0__0	max_left=297	max_left_minus=296	max_left_plus=297	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=147	max_min_right_minus=147	max_min_right_plus=146	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=291	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=7.33	new_junction_read_count=669	polymorphism_frequency=1.000e+00	pos_hash_score=185	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=657
JC	829	.	NC_000913	1396910	-1	NC_000913	1396977	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.770e-02	junction_possible_overlap_registers=284	key=NC_000913__1396920__-1__NC_000913__1396977__1__10____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.770e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=10	side_2_possible_overlap_registers=294	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=3
JC	830	.	NC_000913	1396977	1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.800e-02	junction_possible_overlap_registers=284	key=NC_000913__1396977__1__NC_000913__2066477__1__10____300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=242	max_right_minus=161	max_right_plus=242	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.800e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	831	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=275	max_left_plus=294	max_min_left=142	max_min_left_minus=132	max_min_left_plus=142	max_min_right=148	max_min_right_minus=148	max_min_right_plus=139	max_pos_hash_score=590	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.98	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	832	.	NC_000913	1459406	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1459406__1__NC_000913__2101749__1__0____300__300__0__1	max_left=299	max_left_minus=291	max_left_plus=299	max_min_left=133	max_min_left_minus=133	max_min_left_plus=133	max_min_right=149	max_min_right_minus=149	max_min_right_plus=132	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=284	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	833	.	NC_000913	1467910	1	NC_000913	1671446	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=5.319e-02	junction_possible_overlap_registers=293	key=NC_000913__1467910__1__NC_000913__1671445__1__1____300__300__1__0	max_left=231	max_left_minus=231	max_left_plus=0	max_min_left=87	max_min_left_minus=87	max_min_left_plus=0	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=588	max_right=210	max_right_minus=210	max_right_plus=0	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.319e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	834	.	NC_000913	1469240	-1	NC_000913	1671450	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.456e-01	junction_possible_overlap_registers=294	key=NC_000913__1469240__-1__NC_000913__1671450__-1__0____300__300__1__0	max_left=297	max_left_minus=272	max_left_plus=297	max_min_left=114	max_min_left_minus=110	max_min_left_plus=114	max_min_right=114	max_min_right_minus=105	max_min_right_plus=114	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=275	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.456e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=15
JC	835	.	NC_000913	1469296	1	NC_000913	1995730	-1	0	alignment_overlap=2	coverage_minus=20	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=2.990e-01	junction_possible_overlap_registers=292	key=NC_000913__1469296__1__NC_000913__1995732__-1__2____300__300__1__0	max_left=263	max_left_minus=263	max_left_plus=260	max_min_left=117	max_min_left_minus=117	max_min_left_plus=116	max_min_right=123	max_min_right_minus=121	max_min_right_plus=123	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=286	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.32	new_junction_read_count=29	polymorphism_frequency=2.990e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=29
JC	836	.	NC_000913	1470516	-1	NC_000913	1995729	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=2.353e-01	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__1995729__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=269	max_min_left=140	max_min_left_minus=140	max_min_left_plus=126	max_min_right=121	max_min_right_minus=121	max_min_right_plus=77	max_pos_hash_score=590	max_right=277	max_right_minus=277	max_right_plus=272	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.22	new_junction_read_count=20	polymorphism_frequency=2.353e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=19
JC	837	.	NC_000913	1470516	-1	NC_000913	2042477	1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.458e-01	junction_possible_overlap_registers=293	key=NC_000913__1470516__-1__NC_000913__2042476__1__1____300__300__1__0	max_left=295	max_left_minus=288	max_left_plus=295	max_min_left=129	max_min_left_minus=129	max_min_left_plus=116	max_min_right=98	max_min_right_minus=98	max_min_right_plus=94	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=266	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.23	new_junction_read_count=21	polymorphism_frequency=1.458e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=123	side_2_redundant=0	total_non_overlap_reads=20
JC	838	.	NC_000913	1743496	1	NC_000913	2067353	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.091e-02	junction_possible_overlap_registers=294	key=NC_000913__1743496__1__NC_000913__2067353__-1__0____300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=285	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=47	max_min_right_minus=28	max_min_right_plus=47	max_pos_hash_score=590	max_right=47	max_right_minus=28	max_right_plus=47	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=9.091e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=5
JC	839	.	NC_000913	1743496	1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=19	flanking_left=300	flanking_right=300	frequency=3.151e-01	junction_possible_overlap_registers=294	key=NC_000913__1743496__1__NC_000913__2290113__-1__0____300__300__0__1	max_left=287	max_left_minus=287	max_left_plus=285	max_min_left=147	max_min_left_minus=125	max_min_left_plus=147	max_min_right=120	max_min_right_minus=28	max_min_right_plus=120	max_pos_hash_score=590	max_right=288	max_right_minus=175	max_right_plus=288	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.25	new_junction_read_count=23	polymorphism_frequency=3.151e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	840	.	NC_000913	1743499	-1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=3.448e-01	junction_possible_overlap_registers=294	key=NC_000913__1743499__-1__NC_000913__2101749__1__0____300__300__0__1	max_left=298	max_left_minus=286	max_left_plus=298	max_min_left=137	max_min_left_minus=137	max_min_left_plus=136	max_min_right=146	max_min_right_minus=119	max_min_right_plus=146	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=281	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.33	new_junction_read_count=30	polymorphism_frequency=3.448e-01	pos_hash_score=24	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	841	.	NC_000913	1757510	-1	NC_000913	1757553	1	0	alignment_overlap=6	coverage_minus=30	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=288	key=NC_000913__1757510__-1__NC_000913__1757547__1__6____300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=289	max_min_left=138	max_min_left_minus=138	max_min_left_plus=125	max_min_right=142	max_min_right_minus=88	max_min_right_plus=142	max_pos_hash_score=578	max_right=283	max_right_minus=281	max_right_plus=283	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.04	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	842	.	NC_000913	1907165	1	NC_000913	3720633	1	0	alignment_overlap=0	coverage_minus=48	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1907165__1__NC_000913__3720633__1__0____300__300__0__0	max_left=295	max_left_minus=263	max_left_plus=295	max_min_left=145	max_min_left_minus=145	max_min_left_plus=143	max_min_right=148	max_min_right_minus=148	max_min_right_plus=147	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.17	new_junction_read_count=107	polymorphism_frequency=9.906e-01	pos_hash_score=59	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=107
JC	843	.	NC_000913	1907167	-1	NC_000913	3722075	-1	0	alignment_overlap=2	coverage_minus=43	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1907168__-1__NC_000913__3722076__-1__2____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=294	max_min_left=117	max_min_left_minus=101	max_min_left_plus=117	max_min_right=144	max_min_right_minus=133	max_min_right_plus=144	max_pos_hash_score=586	max_right=297	max_right_minus=295	max_right_plus=297	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.81	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=72
JC	844	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=134	max_min_left_minus=131	max_min_left_plus=134	max_min_right=150	max_min_right_minus=145	max_min_right_plus=150	max_pos_hash_score=590	max_right=292	max_right_minus=272	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=88
JC	845	.	NC_000913	1995507	1	NC_000913	2170171	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=14	flanking_left=300	flanking_right=300	frequency=2.269e-01	junction_possible_overlap_registers=294	key=NC_000913__1995507__1__NC_000913__2170171__1__0____300__300__0__1	max_left=269	max_left_minus=269	max_left_plus=243	max_min_left=131	max_min_left_minus=49	max_min_left_plus=131	max_min_right=108	max_min_right_minus=108	max_min_right_plus=96	max_pos_hash_score=590	max_right=289	max_right_minus=277	max_right_plus=289	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.29	new_junction_read_count=27	polymorphism_frequency=2.269e-01	pos_hash_score=21	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	846	.	NC_000913	1995509	-1	NC_000913	2171428	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=15	flanking_left=300	flanking_right=300	frequency=2.581e-01	junction_possible_overlap_registers=294	key=NC_000913__1995509__-1__NC_000913__2171428__-1__0____300__300__0__1	max_left=297	max_left_minus=284	max_left_plus=297	max_min_left=120	max_min_left_minus=120	max_min_left_plus=77	max_min_right=133	max_min_right_minus=133	max_min_right_plus=129	max_pos_hash_score=590	max_right=296	max_right_minus=286	max_right_plus=296	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.35	new_junction_read_count=32	polymorphism_frequency=2.581e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=32
JC	847	.	NC_000913	2066420	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.972e-02	junction_possible_overlap_registers=284	key=NC_000913__2066420__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=257	max_left_minus=257	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=31	max_min_right_minus=31	max_min_right_plus=0	max_pos_hash_score=570	max_right=242	max_right_minus=161	max_right_plus=242	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.972e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=4
JC	848	.	NC_000913	2066420	-1	NC_000913	2102077	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.794e-02	junction_possible_overlap_registers=284	key=NC_000913__2066420__-1__NC_000913__2102067__1__10____300__300__0__1	max_left=257	max_left_minus=257	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=31	max_min_right_minus=31	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.794e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	849	.	NC_000913	2066477	1	NC_000913	2102000	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.725e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__2102010__-1__10____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.725e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.09	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=3
JC	850	.	NC_000913	2066477	1	NC_000913	2289170	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.272e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__2289180__-1__10____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.272e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.19	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=17	side_2_redundant=0	total_non_overlap_reads=3
JC	851	.	NC_000913	2066477	1	NC_000913	3131089	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.135e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__3131079__1__10____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=6.135e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=3
JC	852	.	NC_000913	2066477	1	NC_000913	3365807	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.319e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__3365817__-1__10____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.319e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=3
JC	853	.	NC_000913	2066477	1	NC_000913	3652287	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.566e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__3652297__-1__10____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.566e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.12	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=3
JC	854	.	NC_000913	2102010	-1	NC_000913	2102077	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.796e-01	junction_possible_overlap_registers=284	key=NC_000913__2102010__-1__NC_000913__2102067__1__10____300__300__0__1	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.796e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.09	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=8	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	855	.	NC_000913	2153316	-1	NC_000913	2153652	1	0	alignment_overlap=16	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.390e-02	junction_possible_overlap_registers=278	key=NC_000913__2153316__-1__NC_000913__2153636__1__16____300__300__0__0	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=16	max_min_left_minus=16	max_min_left_plus=8	max_min_right=132	max_min_right_minus=67	max_min_right_plus=132	max_pos_hash_score=558	max_right=273	max_right_minus=268	max_right_plus=273	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.390e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	856	.	NC_000913	2239316	1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2239316__1__NC_000913__2290113__-1__0____300__300__0__1	max_left=298	max_left_minus=295	max_left_plus=298	max_min_left=144	max_min_left_minus=143	max_min_left_plus=144	max_min_right=139	max_min_right_minus=139	max_min_right_plus=130	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=96	polymorphism_frequency=9.793e-01	pos_hash_score=59	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=93
JC	857	.	NC_000913	2239319	-1	NC_000913	2288919	1	0	alignment_overlap=2	coverage_minus=40	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__2239321__-1__NC_000913__2288919__1__2____300__300__0__1	max_left=294	max_left_minus=280	max_left_plus=294	max_min_left=143	max_min_left_minus=120	max_min_left_plus=143	max_min_right=149	max_min_right_minus=149	max_min_right_plus=137	max_pos_hash_score=586	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=93
JC	858	.	NC_000913	2288919	1	NC_000913	3131469	1	0	alignment_overlap=1	coverage_minus=33	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__3131468__1__1____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=283	max_min_left=144	max_min_left_minus=131	max_min_left_plus=144	max_min_right=145	max_min_right_minus=143	max_min_right_plus=145	max_pos_hash_score=588	max_right=283	max_right_minus=248	max_right_plus=283	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.78	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	859	.	NC_000913	2288919	1	NC_000913	3262484	1	0	alignment_overlap=1	coverage_minus=75	coverage_plus=81	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__3262483__1__1____300__300__1__0	max_left=292	max_left_minus=288	max_left_plus=292	max_min_left=147	max_min_left_minus=138	max_min_left_plus=147	max_min_right=148	max_min_right_minus=135	max_min_right_plus=148	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=280	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.74	new_junction_read_count=159	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=156
JC	860	.	NC_000913	2289180	-1	NC_000913	2289247	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.545e-01	junction_possible_overlap_registers=284	key=NC_000913__2289180__-1__NC_000913__2289237__1__10____300__300__0__1	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.545e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	861	.	NC_000913	2290113	-1	NC_000913	3262487	-1	0	alignment_overlap=0	coverage_minus=75	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__3262487__-1__0____300__300__1__0	max_left=293	max_left_minus=288	max_left_plus=293	max_min_left=146	max_min_left_minus=146	max_min_left_plus=117	max_min_right=149	max_min_right_minus=149	max_min_right_plus=110	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.42	new_junction_read_count=130	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=128
JC	862	.	NC_000913	2305740	-1	NC_000913	2306377	1	0	alignment_overlap=6	coverage_minus=20	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=5.529e-01	junction_possible_overlap_registers=288	key=NC_000913__2305740__-1__NC_000913__2306371__1__6____300__300__0__0	max_left=290	max_left_minus=285	max_left_plus=290	max_min_left=114	max_min_left_minus=114	max_min_left_plus=105	max_min_right=140	max_min_right_minus=140	max_min_right_plus=131	max_pos_hash_score=578	max_right=290	max_right_minus=290	max_right_plus=287	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.49	new_junction_read_count=44	polymorphism_frequency=5.529e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.45	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.35	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=44
JC	863	.	NC_000913	2357655	-1	NC_000913	2357840	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.562e-02	junction_possible_overlap_registers=293	key=NC_000913__2357655__-1__NC_000913__2357840__1__-1__C__300__300__0__0	max_left=157	max_left_minus=157	max_left_plus=118	max_min_left=118	max_min_left_minus=0	max_min_left_plus=118	max_min_right=142	max_min_right_minus=142	max_min_right_plus=0	max_pos_hash_score=588	max_right=195	max_right_minus=142	max_right_plus=195	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.562e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=C
JC	864	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.783e-02	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=178	max_left_minus=178	max_left_plus=96	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=129	max_min_right_minus=129	max_min_right_plus=0	max_pos_hash_score=510	max_right=240	max_right_minus=129	max_right_plus=240	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=5.783e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=114	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=6
JC	865	.	NC_000913	2521006	-1	NC_000913	2521127	1	0	alignment_overlap=76	coverage_minus=9	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=3.948e-01	junction_possible_overlap_registers=218	key=NC_000913__2521006__-1__NC_000913__2521051__1__76____300__300__0__0	max_left=202	max_left_minus=202	max_left_plus=179	max_min_left=109	max_min_left_minus=109	max_min_left_plus=108	max_min_right=86	max_min_right_minus=58	max_min_right_plus=86	max_pos_hash_score=438	max_right=212	max_right_minus=212	max_right_plus=156	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.34	new_junction_read_count=23	polymorphism_frequency=3.948e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=22
JC	866	.	NC_000913	2521632	-1	NC_000913	2522077	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.356e-02	junction_possible_overlap_registers=284	key=NC_000913__2521632__-1__NC_000913__2522067__1__10____300__300__0__0	max_left=146	max_left_minus=146	max_left_plus=146	max_min_left=8	max_min_left_minus=8	max_min_left_plus=8	max_min_right=56	max_min_right_minus=56	max_min_right_plus=56	max_pos_hash_score=570	max_right=90	max_right_minus=90	max_right_plus=90	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.356e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=4
JC	867	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=36	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=290	max_left_minus=270	max_left_plus=290	max_min_left=145	max_min_left_minus=141	max_min_left_plus=145	max_min_right=142	max_min_right_minus=125	max_min_right_plus=142	max_pos_hash_score=574	max_right=276	max_right_minus=268	max_right_plus=276	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.92	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	868	.	NC_000913	2662401	-1	NC_000913	2662584	1	0	alignment_overlap=50	coverage_minus=8	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=3.384e-01	junction_possible_overlap_registers=244	key=NC_000913__2662401__-1__NC_000913__2662534__1__50____300__300__0__0	max_left=213	max_left_minus=161	max_left_plus=213	max_min_left=120	max_min_left_minus=117	max_min_left_plus=120	max_min_right=98	max_min_right_minus=88	max_min_right_plus=98	max_pos_hash_score=490	max_right=247	max_right_minus=247	max_right_plus=229	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.24	new_junction_read_count=18	polymorphism_frequency=3.384e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=50	side_1_possible_overlap_registers=294	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=18
JC	869	.	NC_000913	2817942	-1	NC_000913	2818492	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.348e-02	junction_possible_overlap_registers=274	key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0	max_left=275	max_left_minus=206	max_left_plus=275	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=57	max_min_right_plus=5	max_pos_hash_score=550	max_right=57	max_right_minus=57	max_right_plus=5	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.348e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=3
JC	870	.	NC_000913	2818275	-1	NC_000913	2818551	1	0	alignment_overlap=79	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.371e-02	junction_possible_overlap_registers=215	key=NC_000913__2818275__-1__NC_000913__2818472__1__79____300__300__0__0	max_left=211	max_left_minus=211	max_left_plus=122	max_min_left=87	max_min_left_minus=87	max_min_left_plus=70	max_min_right=99	max_min_right_minus=86	max_min_right_plus=99	max_pos_hash_score=432	max_right=150	max_right_minus=133	max_right_plus=150	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=9.371e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=79	side_1_possible_overlap_registers=294	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=5
JC	871	.	NC_000913	2876678	1	NC_000913	3130146	1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2876678__1__NC_000913__3130146__1__0____300__300__0__1	max_left=298	max_left_minus=290	max_left_plus=298	max_min_left=139	max_min_left_minus=139	max_min_left_plus=138	max_min_right=146	max_min_right_minus=146	max_min_right_plus=146	max_pos_hash_score=590	max_right=295	max_right_minus=293	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=93
JC	872	.	NC_000913	2876681	-1	NC_000913	3131340	-1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2876681__-1__NC_000913__3131340__-1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=148	max_min_left_minus=148	max_min_left_plus=138	max_min_right=149	max_min_right_minus=149	max_min_right_plus=113	max_pos_hash_score=590	max_right=295	max_right_minus=294	max_right_plus=295	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.75	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=67
JC	873	.	NC_000913	2877790	-1	NC_000913	2878035	1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.130e-01	junction_possible_overlap_registers=277	key=NC_000913__2877790__-1__NC_000913__2878018__1__17____300__300__0__0	max_left=254	max_left_minus=254	max_left_plus=133	max_min_left=133	max_min_left_minus=118	max_min_left_plus=133	max_min_right=29	max_min_right_minus=29	max_min_right_plus=0	max_pos_hash_score=556	max_right=209	max_right_minus=209	max_right_plus=187	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=1.130e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=17	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=7
JC	874	.	NC_000913	2878096	-1	NC_000913	2878404	1	0	alignment_overlap=30	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.347e-02	junction_possible_overlap_registers=264	key=NC_000913__2878096__-1__NC_000913__2878374__1__30____300__300__0__0	max_left=149	max_left_minus=149	max_left_plus=149	max_min_left=60	max_min_left_minus=0	max_min_left_plus=60	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=530	max_right=197	max_right_minus=50	max_right_plus=197	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.347e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=30	side_1_possible_overlap_registers=294	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=264	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=4
JC	875	.	NC_000913	3105438	-1	NC_000913	3105787	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.762e-02	junction_possible_overlap_registers=283	key=NC_000913__3105438__-1__NC_000913__3105776__1__11____300__300__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=76	max_pos_hash_score=568	max_right=76	max_right_minus=76	max_right_plus=76	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.762e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=3
JC	876	.	NC_000913	3131012	-1	NC_000913	3131079	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.564e-01	junction_possible_overlap_registers=284	key=NC_000913__3131022__-1__NC_000913__3131079__1__10____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=570	max_right=129	max_right_minus=95	max_right_plus=129	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=7.564e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=10	side_2_possible_overlap_registers=294	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=3
JC	877	.	NC_000913	3203595	1	NC_000913	3281168	-1	0	alignment_overlap=6	coverage_minus=6	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=2.702e-01	junction_possible_overlap_registers=288	key=NC_000913__3203595__1__NC_000913__3281174__-1__6____300__300__0__0	max_left=261	max_left_minus=261	max_left_plus=255	max_min_left=138	max_min_left_minus=89	max_min_left_plus=138	max_min_right=143	max_min_right_minus=118	max_min_right_plus=143	max_pos_hash_score=578	max_right=290	max_right_minus=205	max_right_plus=290	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.36	new_junction_read_count=32	polymorphism_frequency=2.702e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=30
JC	878	.	NC_000913	3260457	-1	NC_000913	3260818	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.296e-02	junction_possible_overlap_registers=283	key=NC_000913__3260457__-1__NC_000913__3260807__1__11____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=171	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=568	max_right=48	max_right_minus=48	max_right_plus=48	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.296e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.65	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=151	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	879	.	NC_000913	3270072	1	NC_000913	4137788	1	-25	alignment_overlap=-25	coverage_minus=5	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=4.733e-02	junction_possible_overlap_registers=269	key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0	max_left=247	max_left_minus=247	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=41	max_min_right_plus=0	max_pos_hash_score=540	max_right=41	max_right_minus=41	max_right_plus=0	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.733e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.40	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA
JC	880	.	NC_000913	3365817	-1	NC_000913	3365884	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.626e-01	junction_possible_overlap_registers=284	key=NC_000913__3365817__-1__NC_000913__3365874__1__10____300__300__0__1	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.626e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.17	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	881	.	NC_000913	3469040	-1	NC_000913	3469344	1	0	alignment_overlap=20	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.828e-02	junction_possible_overlap_registers=274	key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0	max_left=254	max_left_minus=101	max_left_plus=254	max_min_left=101	max_min_left_minus=101	max_min_left_plus=101	max_min_right=26	max_min_right_minus=0	max_min_right_plus=26	max_pos_hash_score=550	max_right=164	max_right_minus=164	max_right_plus=164	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.828e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	882	.	NC_000913	3533427	-1	NC_000913	3533620	1	0	alignment_overlap=10	coverage_minus=20	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=4.702e-01	junction_possible_overlap_registers=284	key=NC_000913__3533427__-1__NC_000913__3533610__1__10____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=243	max_min_left=126	max_min_left_minus=76	max_min_left_plus=126	max_min_right=144	max_min_right_minus=144	max_min_right_plus=141	max_pos_hash_score=570	max_right=289	max_right_minus=281	max_right_plus=289	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.46	new_junction_read_count=41	polymorphism_frequency=4.702e-01	pos_hash_score=30	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=47	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=40
JC	883	.	NC_000913	3535342	-1	NC_000913	3535348	1	0	alignment_overlap=3	coverage_minus=37	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__3535342__-1__NC_000913__3535345__1__3____300__300__0__0	max_left=285	max_left_minus=265	max_left_plus=285	max_min_left=142	max_min_left_minus=142	max_min_left_plus=142	max_min_right=147	max_min_right_minus=140	max_min_right_plus=147	max_pos_hash_score=584	max_right=287	max_right_minus=287	max_right_plus=275	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.94	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	884	.	NC_000913	3621836	-1	NC_000913	3622017	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=282	key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0	max_left=228	max_left_minus=191	max_left_plus=228	max_min_left=140	max_min_left_minus=140	max_min_left_plus=83	max_min_right=127	max_min_right_minus=97	max_min_right_plus=127	max_pos_hash_score=566	max_right=201	max_right_minus=148	max_right_plus=201	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=8.390e-01	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=5
JC	885	.	NC_000913	3652297	-1	NC_000913	3652364	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.202e-01	junction_possible_overlap_registers=284	key=NC_000913__3652297__-1__NC_000913__3652354__1__10____300__300__0__1	max_left=129	max_left_minus=129	max_left_plus=95	max_min_left=129	max_min_left_minus=129	max_min_left_plus=95	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=284	max_right_minus=161	max_right_plus=284	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.202e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	886	.	NC_000913	3708541	-1	NC_000913	3708644	1	0	alignment_overlap=10	coverage_minus=12	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=3.809e-01	junction_possible_overlap_registers=284	key=NC_000913__3708541__-1__NC_000913__3708634__1__10____300__300__0__0	max_left=272	max_left_minus=233	max_left_plus=272	max_min_left=137	max_min_left_minus=137	max_min_left_plus=61	max_min_right=143	max_min_right_minus=143	max_min_right_plus=83	max_pos_hash_score=570	max_right=267	max_right_minus=267	max_right_plus=262	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.26	new_junction_read_count=23	polymorphism_frequency=3.809e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.39	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=23
JC	887	.	NC_000913	3708634	-1	NC_000913	3708634	1	-65	alignment_overlap=-65	coverage_minus=4	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=1.089e-01	junction_possible_overlap_registers=229	key=NC_000913__3708634__-1__NC_000913__3708634__1__-65__ACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAG__300__300__0__0	max_left=96	max_left_minus=96	max_left_plus=0	max_min_left=96	max_min_left_minus=96	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=460	max_right=163	max_right_minus=163	max_right_plus=0	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=1.089e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.47	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=ACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAG
JC	888	.	NC_000913	3764827	-1	NC_000913	3765008	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.668e-01	junction_possible_overlap_registers=282	key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0	max_left=228	max_left_minus=191	max_left_plus=228	max_min_left=140	max_min_left_minus=140	max_min_left_plus=83	max_min_right=127	max_min_right_minus=97	max_min_right_plus=127	max_pos_hash_score=566	max_right=201	max_right_minus=148	max_right_plus=201	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.668e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=5
JC	889	.	NC_000913	3890273	-1	NC_000913	3890310	1	0	alignment_overlap=1	coverage_minus=77	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3890273__-1__NC_000913__3890309__1__1____300__300__0__0	max_left=298	max_left_minus=298	max_left_plus=298	max_min_left=148	max_min_left_minus=129	max_min_left_plus=148	max_min_right=148	max_min_right_minus=127	max_min_right_plus=148	max_pos_hash_score=588	max_right=285	max_right_minus=285	max_right_plus=282	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.55	new_junction_read_count=141	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=140
JC	890	.	NC_000913	4001896	-1	NC_000913	4002071	1	0	alignment_overlap=9	coverage_minus=9	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=2.858e-01	junction_possible_overlap_registers=285	key=NC_000913__4001896__-1__NC_000913__4002062__1__9____300__300__0__0	max_left=288	max_left_minus=284	max_left_plus=288	max_min_left=119	max_min_left_minus=119	max_min_left_plus=62	max_min_right=144	max_min_right_minus=144	max_min_right_plus=114	max_pos_hash_score=572	max_right=289	max_right_minus=289	max_right_plus=282	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.26	new_junction_read_count=23	polymorphism_frequency=2.858e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=22
JC	891	.	NC_000913	4190521	-1	NC_000913	4190728	1	0	alignment_overlap=7	coverage_minus=18	coverage_plus=18	flanking_left=300	flanking_right=300	frequency=3.742e-01	junction_possible_overlap_registers=287	key=NC_000913__4190521__-1__NC_000913__4190721__1__7____300__300__0__0	max_left=291	max_left_minus=237	max_left_plus=291	max_min_left=136	max_min_left_minus=136	max_min_left_plus=126	max_min_right=144	max_min_right_minus=144	max_min_right_plus=138	max_pos_hash_score=576	max_right=292	max_right_minus=292	max_right_plus=283	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.40	new_junction_read_count=36	polymorphism_frequency=3.742e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=36
JC	892	.	NC_000913	4343759	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__4343759__1__NC_000913__4498181__1__0____300__300__0__1	max_left=295	max_left_minus=276	max_left_plus=295	max_min_left=139	max_min_left_minus=135	max_min_left_plus=139	max_min_right=138	max_min_right_minus=138	max_min_right_plus=135	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=270	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=109
JC	893	.	NC_000913	4343763	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__4343763__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=293	max_min_left=148	max_min_left_minus=148	max_min_left_plus=146	max_min_right=139	max_min_right_minus=137	max_min_right_plus=139	max_pos_hash_score=590	max_right=293	max_right_minus=284	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	894	.	NC_000913	4464478	-1	NC_000913	4464780	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.211e-02	junction_possible_overlap_registers=282	key=NC_000913__4464478__-1__NC_000913__4464768__1__12____300__300__0__0	max_left=264	max_left_minus=264	max_left_plus=254	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=34	max_min_right_minus=24	max_min_right_plus=34	max_pos_hash_score=566	max_right=178	max_right_minus=178	max_right_plus=178	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.211e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=4
JC	895	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.263e-01	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=123	max_min_left=37	max_min_left_minus=0	max_min_left_plus=37	max_min_right=99	max_min_right_minus=99	max_min_right_plus=88	max_pos_hash_score=412	max_right=203	max_right_minus=99	max_right_plus=203	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.11	new_junction_read_count=7	polymorphism_frequency=1.263e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=7
UN	896	.	NC_000913	15648	15649
UN	897	.	NC_000913	15651	15658
UN	898	.	NC_000913	15660	16470
UN	899	.	NC_000913	16473	16473
UN	900	.	NC_000913	16484	16484
UN	901	.	NC_000913	20061	20285
UN	902	.	NC_000913	224014	224510
UN	903	.	NC_000913	225177	225326
UN	904	.	NC_000913	227265	228423
UN	905	.	NC_000913	257908	258683
UN	906	.	NC_000913	270795	270795
UN	907	.	NC_000913	270798	270798
UN	908	.	NC_000913	270802	270802
UN	909	.	NC_000913	270808	271004
UN	910	.	NC_000913	271006	271006
UN	911	.	NC_000913	271011	271011
UN	912	.	NC_000913	271016	271016
UN	913	.	NC_000913	271018	271018
UN	914	.	NC_000913	271020	271020
UN	915	.	NC_000913	274248	274865
UN	916	.	NC_000913	274867	274867
UN	917	.	NC_000913	279424	279427
UN	918	.	NC_000913	279429	279429
UN	919	.	NC_000913	279431	279434
UN	920	.	NC_000913	279436	279671
UN	921	.	NC_000913	279673	279673
UN	922	.	NC_000913	290918	291129
UN	923	.	NC_000913	315504	315504
UN	924	.	NC_000913	315506	315507
UN	925	.	NC_000913	315509	316210
UN	926	.	NC_000913	316216	316218
UN	927	.	NC_000913	381526	381527
UN	928	.	NC_000913	381529	381529
UN	929	.	NC_000913	381531	381531
UN	930	.	NC_000913	381533	382325
UN	931	.	NC_000913	382330	382330
UN	932	.	NC_000913	382333	382333
UN	933	.	NC_000913	391975	392697
UN	934	.	NC_000913	507082	517161
UN	935	.	NC_000913	526094	526094
UN	936	.	NC_000913	526096	526459
UN	937	.	NC_000913	567055	567756
UN	938	.	NC_000913	567762	567762
UN	939	.	NC_000913	567766	567766
UN	940	.	NC_000913	567768	567768
UN	941	.	NC_000913	574861	578108
UN	942	.	NC_000913	579271	579271
UN	943	.	NC_000913	579502	579502
UN	944	.	NC_000913	579811	579811
UN	945	.	NC_000913	580020	580020
UN	946	.	NC_000913	580119	580119
UN	947	.	NC_000913	580302	580302
UN	948	.	NC_000913	608274	609092
UN	949	.	NC_000913	688131	688765
UN	950	.	NC_000913	770718	770718
UN	951	.	NC_000913	1094509	1095233
UN	952	.	NC_000913	1095235	1095235
UN	953	.	NC_000913	1196374	1211413
UN	954	.	NC_000913	1299499	1300697
UN	955	.	NC_000913	1396332	1396950
UN	956	.	NC_000913	1399594	1423230
UN	957	.	NC_000913	1423544	1428906
UN	958	.	NC_000913	1429906	1459405
UN	959	.	NC_000913	1468173	1468173
UN	960	.	NC_000913	1468180	1468974
UN	961	.	NC_000913	1469553	1469553
UN	962	.	NC_000913	1469561	1470234
UN	963	.	NC_000913	1528520	1528521
UN	964	.	NC_000913	1528529	1528529
UN	965	.	NC_000913	1528531	1528531
UN	966	.	NC_000913	1528534	1528935
UN	967	.	NC_000913	1634388	1634388
UN	968	.	NC_000913	1634404	1634404
UN	969	.	NC_000913	1651100	1651270
UN	970	.	NC_000913	1651276	1651276
UN	971	.	NC_000913	1757511	1757552
UN	972	.	NC_000913	1978495	1979270
UN	973	.	NC_000913	2067003	2067003
UN	974	.	NC_000913	2067006	2067035
UN	975	.	NC_000913	2069196	2070005
UN	976	.	NC_000913	2102011	2102663
UN	977	.	NC_000913	2170425	2170425
UN	978	.	NC_000913	2170433	2171164
UN	979	.	NC_000913	2289197	2289834
UN	980	.	NC_000913	2304762	2304762
UN	981	.	NC_000913	2514536	2515355
UN	982	.	NC_000913	2558699	2565488
UN	983	.	NC_000913	2726307	2726308
UN	984	.	NC_000913	2726314	2726314
UN	985	.	NC_000913	2726318	2729009
UN	986	.	NC_000913	2729815	2730744
UN	987	.	NC_000913	2730746	2730747
UN	988	.	NC_000913	2996630	2997425
UN	989	.	NC_000913	3130424	3131468
UN	990	.	NC_000913	3186385	3187156
UN	991	.	NC_000913	3187163	3187163
UN	992	.	NC_000913	3365836	3366473
UN	993	.	NC_000913	3423935	3424376
UN	994	.	NC_000913	3424924	3426914
UN	995	.	NC_000913	3426918	3426918
UN	996	.	NC_000913	3427210	3428298
UN	997	.	NC_000913	3535343	3535347
UN	998	.	NC_000913	3583700	3583912
UN	999	.	NC_000913	3619531	3620814
UN	1000	.	NC_000913	3621308	3621308
UN	1001	.	NC_000913	3621316	3621317
UN	1002	.	NC_000913	3621327	3621327
UN	1003	.	NC_000913	3621329	3621329
UN	1004	.	NC_000913	3621331	3622071
UN	1005	.	NC_000913	3622073	3622074
UN	1006	.	NC_000913	3622076	3622076
UN	1007	.	NC_000913	3652306	3652955
UN	1008	.	NC_000913	3762516	3762517
UN	1009	.	NC_000913	3762519	3763795
UN	1010	.	NC_000913	3763797	3763798
UN	1011	.	NC_000913	3764334	3765003
UN	1012	.	NC_000913	3765040	3765040
UN	1013	.	NC_000913	3890274	3890309
UN	1014	.	NC_000913	3942297	3942297
UN	1015	.	NC_000913	3942300	3942300
UN	1016	.	NC_000913	3942303	3942303
UN	1017	.	NC_000913	3942306	3942306
UN	1018	.	NC_000913	3942312	3942312
UN	1019	.	NC_000913	3942315	3943130
UN	1020	.	NC_000913	3944348	3945289
UN	1021	.	NC_000913	4035434	4036809
UN	1022	.	NC_000913	4036813	4036813
UN	1023	.	NC_000913	4038100	4038100
UN	1024	.	NC_000913	4038104	4038413
UN	1025	.	NC_000913	4038980	4038980
UN	1026	.	NC_000913	4038986	4038987
UN	1027	.	NC_000913	4038994	4038994
UN	1028	.	NC_000913	4038998	4039135
UN	1029	.	NC_000913	4039674	4040326
UN	1030	.	NC_000913	4166585	4166594
UN	1031	.	NC_000913	4166926	4166926
UN	1032	.	NC_000913	4166928	4167942
UN	1033	.	NC_000913	4168848	4171378
UN	1034	.	NC_000913	4176824	4176852
UN	1035	.	NC_000913	4176854	4176854
UN	1036	.	NC_000913	4176857	4176859
UN	1037	.	NC_000913	4176862	4176862
UN	1038	.	NC_000913	4208386	4209469
UN	1039	.	NC_000913	4210304	4212841
UN	1040	.	NC_000913	4212843	4212844
UN	1041	.	NC_000913	4273339	4273339
UN	1042	.	NC_000913	4325976	4326206
UN	1043	.	NC_000913	4498476	4499230
UN	1044	.	NC_000913	4499239	4499239
UN	1045	.	NC_000913	4507747	4508415
UN	1046	.	NC_000913	4508418	4508418
UN	1047	.	NC_000913	4508420	4508423
UN	1048	.	NC_000913	4508425	4508425