mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 44 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,988,387 | 0 | A | C | 75.9% | 222.5 / 64.3 | 108 | I56L (ATC→CTC) | yecR | lipoprotein YecR |
| * | NC_000913 | 190,843 | 0 | C | A | 46.5% | 120.8 / 20.8 | 101 | intergenic (+244/‑14) | rpsB/tsf | 30S ribosomal subunit protein S2/protein chain elongation factor EF‑Ts |
| * | NC_000913 | 2,477,265 | 0 | A | C | 35.9% | 128.2 / 48.9 | 92 | L122* (TTA→TGA) | dsdC | DNA‑binding transcriptional dual regulator DsdC |
| * | NC_000913 | 232,229 | 0 | C | A | 33.9% | 185.8 / 11.9 | 115 | P102T (CCG→ACG) | yafE | putative S‑adenosylmethionine‑dependent methyltransferase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 32.1% | 68.7 / 42.9 | 53 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 866,319 | 0 | C | A | 31.7% | 174.4 / 10.8 | 105 | E16* (GAG→TAG) | moeA | molybdopterin molybdotransferase |
| * | NC_000913 | 3,911,533 | 0 | C | A | 31.3% | 254.7 / 21.1 | 147 | intergenic (‑8/+306) | pstS/glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| * | NC_000913 | 161,559 | 0 | G | A | 31.2% | 156.0 / 12.5 | 78 | S158L (TCG→TTG) | thpR | RNA 2',3'‑cyclic phosphodiesterase |
| * | NC_000913 | 1,812,509 | 0 | G | T | 31.1% | 270.7 / 28.0 | 132 | L208L (CTC→CTA) | ydjO | protein YdjO |
| * | NC_000913 | 848,028 | 0 | G | T | 30.7% | 210.1 / 27.7 | 127 | intergenic (‑24/+380) | glnH/dps | L‑glutamine ABC transporter periplasmic binding protein/DNA protection during starvation protein |
| * | NC_000913 | 847,955 | 0 | G | A | 30.5% | 156.1 / 44.0 | 118 | A17V (GCG→GTG) | glnH | L‑glutamine ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,269,948 | 0 | T | C | 30.2% | 138.2 / 13.5 | 86 | intergenic (+346/+268) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| * | NC_000913 | 3,054,886 | 0 | G | T | 29.5% | 169.9 / 23.3 | 88 | Q187K (CAA→AAA) | ygfB | PF03695 family protein YgfB |
| * | NC_000913 | 1,015,488 | 0 | C | A | 29.3% | 185.6 / 10.5 | 99 | intergenic (+29/‑227) | pqiC/rmf | intermembrane transport lipoprotein PqiC/ribosome modulation factor |
| * | NC_000913 | 2,477,282 | 0 | G | A | 29.0% | 192.7 / 10.5 | 94 | C116C (TGC→TGT) | dsdC | DNA‑binding transcriptional dual regulator DsdC |
| * | NC_000913 | 2,990,480 | 0 | C | A | 29.0% | 296.3 / 10.3 | 155 | intergenic (‑120/‑788) | yqeK/ygeG | protein YqeK/TPR repeat‑containing putative chaperone YgeG |
| * | NC_000913 | 58,065 | 0 | C | A | 28.6% | 191.8 / 19.2 | 112 | P234P (CCC→CCA) | djlA | co‑chaperone protein DjlA |
| * | NC_000913 | 1,334,966 | 0 | A | C | 27.8% | 220.8 / 39.8 | 151 | intergenic (+137/‑182) | cysB/ymiA | DNA‑binding transcriptional dual regulator CysB/uncharacterized protein YmiA |
| * | NC_000913 | 1,286,870 | 0 | C | A | 27.8% | 98.1 / 20.1 | 54 | S54S (TCC→TCA) | ychS | putative uncharacterized protein YchS |
| * | NC_000913 | 2,365,840 | 0 | T | G | 27.4% | 278.9 / 19.2 | 175 | intergenic (‑220/‑70) | ais/arnB | putative lipopolysaccharide core heptose(II)‑phosphate phosphatase/UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 696741 | 67 (0.680) | 7 (0.100) | 5/442 | 7.0 | 12.2% | intergenic (‑1/+15) | metU/glnW | tRNA‑Met/tRNA‑Gln |
| ? | NC_000913 | 697135 = | 51 (0.700) | intergenic (‑2/+378) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | = 780629 | 101 (1.020) | 5 (0.070) | 5/446 | 7.1 | 6.8% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | 780919 = | 61 (0.830) | intergenic (+1/‑149) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
| * | ? | NC_000913 | = 696506 | 85 (0.860) | 4 (0.050) | 4/444 | 7.6 | 6.0% | intergenic (‑2/+36) | glnX/glnV | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | 696619 = | 62 (0.850) | intergenic (‑3/+45) | glnV/metU | tRNA‑Gln/tRNA‑Met | |||||
| * | ? | NC_000913 | = 1286906 | 48 (0.490) | 9 (0.100) | 6/558 | 7.8 | 16.7% | coding (198/276 nt) | ychS | putative uncharacterized protein YchS |
| ? | NC_000913 | 1287557 = | 45 (0.490) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 4094350 | 68 (0.690) | 4 (0.050) | 4/516 | 8.5 | 6.9% | intergenic (‑78/+373) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| ? | NC_000913 | 4094719 = | 49 (0.580) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | = 780733 | 83 (0.840) | 3 (0.030) +21 bp |
3/556 | 9.5 | 3.8% | intergenic (+104/‑32) | lysT/valT | tRNA‑Lys/tRNA‑Val |
| ? | NC_000913 | 780740 = | 80 (0.810) | intergenic (+111/‑25) | lysT/valT | tRNA‑Lys/tRNA‑Val | |||||