mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,911 | 0 | G | A | 44.0% | 19.2 / 11.6 | 25 | intergenic (‑122/+1) | fliA/fliX | RNA polymerase sigma factor FliA/small RNA FliX |
| * | NC_000913 | 4,604,344 | 0 | C | T | 44.0% | 26.2 / 10.6 | 25 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,813,272 | 0 | C | T | 37.5% | 31.0 / 10.5 | 32 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 4,256,069 | 0 | G | C | 37.0% | 37.7 / 10.1 | 27 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 2,921,173 | 0 | T | C | 34.2% | 64.4 / 12.4 | 42 | I310V (ATT→GTT) | gudP | galactarate/D‑glucarate transporter GudP |
| * | NC_000913 | 4,296,268 | 0 | T | C | 31.6% | 20.1 / 13.5 | 19 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,177,748 | 0 | C | A | 30.4% | 88.7 / 21.3 | 69 | E55* (GAG→TAG) | nudF | ADP‑sugar pyrophosphatase |
| * | NC_000913 | 1,514,000 | 0 | A | T | 29.7% | 66.8 / 10.0 | 37 | Y57F (TAT→TTT) | ydcU | putative ABC transporter membrane subunit YdcU |
| * | NC_000913 | 3,270,455 | 0 | G | T | 29.2% | 69.0 / 11.9 | 48 | noncoding (138/377 nt) | rnpB | RNase P catalytic RNA component |
| * | NC_000913 | 3,875,532 | 0 | A | T | 28.6% | 48.9 / 12.2 | 28 | H32L (CAT→CTT) | yidX | putative lipoprotein YidX |
| * | NC_000913 | 4,287,719 | 0 | T | A | 28.1% | 58.8 / 12.8 | 32 | intergenic (+52/‑45) | ytcB/nrfA | protein YtcB/cytochrome c552 nitrite reductase |
| * | NC_000913 | 106,122 | 0 | A | G | 25.0% | 80.2 / 10.2 | 44 | D273G (GAT→GGT) | ftsZ | cell division protein FtsZ |
| * | NC_000913 | 3,180,341 | 0 | G | T | 24.7% | 166.8 / 15.1 | 85 | G200C (GGT→TGT) | ygiB | DUF1190 domain‑containing protein YgiB |
| * | NC_000913 | 3,158,393 | 0 | G | A | 24.6% | 114.8 / 11.1 | 57 | E248E (GAG→GAA) | yqhG | DUF3828 domain‑containing protein YqhG |
| * | NC_000913 | 4,302,715 | 0 | T | G | 23.4% | 160.5 / 10.1 | 78 | T122P (ACC→CCC) | mdtO | putative multidrug efflux pump subunit MdtO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3229624 | 76 (1.890) | 5 (0.130) +CGA |
4/476 | 3.3 | 6.2% | coding (737/2352 nt) | ygjK | glycoside hydrolase |
| ? | NC_000913 | 3229625 = | 76 (1.890) | coding (738/2352 nt) | ygjK | glycoside hydrolase | |||||
| * | ? | NC_000913 | 4542682 = | 21 (0.520) | 3 (0.080) | 3/464 | 3.6 | 13.0% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 20 (0.520) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||