Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,888,435	Δ3,155 bp		[tnaC]–tnaB	[tnaC], tnaA, tnaB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3888435	3891589	3155	60 [0]	[0] 60	[tnaC]–tnaB	[tnaC],tnaA,tnaB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3888434	0 (0.000)	60 (0.920)	55/478	0.0	100%	intergenic (+242/‑1)	mnmE/tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
	?	NC_000913	3891590 =	0 (0.000)					intergenic (+107/‑25)	tnaB/mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL

GCTCGCAAGAAGTTTCCCAATCAGATGTTCACGGTCTGGGGCGGCAATCTTATTCCGGCGATTGTCATTCTCTTTGGTATAACCGTGATTTTGTGCTGGTTCGGCAACGTCTTTAACGTGTTACCTAAATTTGGCTAAATCCTTCAAGAAGCCAGCCATTCGCTGGCTTCTTGCCTCTCAGGAAATCACTTATGTCCAAATGGCAACTCGCCTGATCCTCCTTCACCACGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACC  >  NC_000913/3891346‑3891832                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                    aaccgcgcttacgaagccgcattctgactgtcagattcggcttcgcttcattgttaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatcattaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTAc                                                                                                                                                                                                                                                <  2:13077‑M2/6‑1 (MQ=255)      cgcttacgaagccgcattctgactgtcagatgcggcttcgcttcattgttaccactcctggtattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAg                                                                                                                                                                                                                                          <  2:344817‑M2/12‑1 (MQ=255)             gaagccgcattctgactgtcagatgcggcttcgcttcattgttaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCtt                                                                                                                                                                                                                                   <  2:443424‑M2/19‑1 (MQ=255)                              gtcagatgcggcttcgcttcattgttaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑tt                                                                                                                                                                                                                 <  2:321301‑M2/36‑1 (MQ=255)                                cagatgcttcttcgcttccttatcaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgcaccccgaacgagtgttattcgattcacatttaaacaatttcagaatatacaaaaactctgagtgtaataaggtatcctcgtgtgtcgcgaggataagtgcattCCTTACTACCAGGACGCTTTAGCCCATGTCCCGC‑tttt                                                                                                                                                                                                               <  1:311716‑M2/38‑1 (MQ=255)                                  gatgcggcttcgcttcattgttaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTg                                                                                                                                                                                                             <  1:364790‑M2/40‑1 (MQ=255)                                   atgcggcttcgcttcattgttaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGa                                                                                                                                                                                                            <  2:462645‑M2/41‑1 (MQ=255)                                     gcggctgctcttgattgttaccactccagttattcctcaaccctttttttaaaccttaaaattcttacgtagtttataatctttaaaaatagcatttaatattgctccccgcacgattgtgattcgaatcacatttaaacaatttcagaatagacaaaaactcttaggttaataatgtagcctcgtgtcttgagaggataagtgcattCCTTACTATCAGGCCGCTTTATCCACTATCCCGC‑TTTTtgagt                                                                                                                                                                                                          >  2:322741‑M2/209‑249 (MQ=255)                                              cttcattgttaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGtttt                                                                                                                                                                                                 >  1:414445‑M2/200‑251 (MQ=255)                                                     gttaccactcctgttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTg                                                                                                                                                                                           <  2:116859‑M2/58‑1 (MQ=255)                                                                 gttattcctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTAt                                                                                                                                                                               <  2:478614‑M2/70‑1 (MQ=255)                                                                    attcctcatcccattttttaagcattaaaatgcttacgtaatttataatctttaaaaaaagcatttaatagtgctccccgaacgattgtgagtctattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagtctcgtgtcttgctaggataagtgcattCCTTACTATCAGGTCGCTTTAGCCCATGTCCCGC‑TTGTTGATGTGTAGTTTTGCCCTGGTTTTACTTTATccc                                                                                                                                                                            <  2:51445‑M2/73‑1 (MQ=255)                                                                       cctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgttattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCccgcc                                                                                                                                                                         <  2:258380‑M2/76‑1 (MQ=255)                                                                        ctcaaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCgg                                                                                                                                                                       >  1:253764‑M2/174‑251 (MQ=255)                                                                          caaccctttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCgg                                                                                                                                                                       <  1:79490‑M2/78‑1 (MQ=255)                                                                              ccctttttttaaacattaaaattcttacgtaatttatatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGa                                                                                                                                                                 <  1:320614‑M2/84‑1 (MQ=255)                                                                                 ttttttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGatat                                                                                                                                                              >  1:205330‑M2/165‑251 (MQ=255)                                                                                     ttaaacattaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTAc                                                                                                                                                          >  2:115451‑M2/161‑251 (MQ=255)                                                                                           attaaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgatccgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGtt                                                                                                                                                    >  1:485034‑M2/155‑251 (MQ=255)                                                                                              aaaattcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgatccgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGt                                                                                                                                                 <  2:485034‑M2/100‑1 (MQ=255)                                                                                                 attcttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTa                                                                                                                                              <  2:65262‑M2/103‑1 (MQ=255)                                                                                                 attcttacgtaatttataatctctaacaaaagcatttaatattgctccacgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGgtttc                                                                                                                                              >  1:117834‑M2/149‑250 (MQ=255)                                                                                                 attcttacctaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTa                                                                                                                                              <  2:359986‑M2/103‑1 (MQ=255)                                                                                                    cttacgtaatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGCCGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTCGTTTTGCCCTGGTTTTCCTTTATCCCGCCGGGATTGCTATGTACCTCGTTGGTTTACcg                                                                                                                                           >  2:50197‑M2/146‑251 (MQ=255)                                                                                                           aatttataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATc                                                                                                                                     <  1:226035‑M2/112‑1 (MQ=255)                                                                                                                ataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCt                                                                                                                                                                                            <  2:239340‑M2/57‑1 (MQ=255)                                                                                                                ataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCt                                                                                                                                                                                            >  1:239340‑M2/134‑190 (MQ=255)                                                                                                                ataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCgccgcc                                                                                                                               <  1:350538‑M2/118‑1 (MQ=255)                                                                                                                ataatctttaaaaaaagcatttaatattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgaattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCgccgcc                                                                                                                               >  2:325571‑M2/134‑251 (MQ=255)                                                                                                                 taatctttaaaaaaagcatttaatattgctccccgaacgattgtgcttcgattaccatttcaacaatttcagaatagacaaaaactctgagtgtaatactgtagcatcgtgtcttgcgaggatacgtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATCTGTAGTTTTGCCCTGGTTTCACTTTATCCCGCCGGGATTGATATNTACCTCGTTGGTTTACCGCGCCTCTccgccg                                                                                                                              >  2:219894‑M2/133‑251 (MQ=255)                                                                                                                                       atattgctccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGGCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAgcgc                                                                                                         >  2:319472‑M2/111‑250 (MQ=255)                                                                                                                                         attgccccccgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGTTTTTACTTTACCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGt                                                                                                      <  2:47527‑M2/143‑1 (MQ=255)                                                                                                                                                  cgaacgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTg                                                                                             >  1:396782‑M2/100‑251 (MQ=255)                                                                                                                                                     acgattgtgattcgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGt                                                                                          <  1:389931‑M2/155‑1 (MQ=255)                                                                                                                                                                  gattcacatttaaaaaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgctttCCTTACTATCAGGACGCTTTAGCCCATGTCCCGT‑TTTTTGTTTTTTAGTTTTGCCCTGGTTTTACTTTACACCGCCGGGATTGATATTTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCt                                                                             <  1:218550‑M2/168‑1 (MQ=255)                                                                                                                                                                         atttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCgggg                                                                      >  1:438535‑M2/77‑251 (MQ=255)                                                                                                                                                                          tttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCgggg                                                                      >  1:13207‑M2/76‑250 (MQ=255)                                                                                                                                                                          tttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagccacgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCgggg                                                                      >  1:271919‑M2/76‑250 (MQ=255)                                                                                                                                                                              aacaatttcagaatagacaaaaactttaagtntaataatgtagcctcgtgtctggcgaggataagtgcattCCTTACTATCAGGACGTTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCTTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGc                                                                 <  2:249373‑M2/180‑1 (MQ=255)                                                                                                                                                                                    ttcagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGc                                                           >  1:483100‑M2/66‑251 (MQ=255)                                                                                                                                                                                      cagaatagacaaaaactctgagtgtaatactgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCCTGTCCCGC‑TTTTTGATTTGGAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGACGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATCTTGCGTTCTCCGTCTATATGGCGGGGATGGCAGCTGcgg                                                         >  2:468489‑M2/64‑250 (MQ=255)                                                                                                                                                                                      cagaatagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCg                                                          <  1:115451‑M2/187‑1 (MQ=255)                                                                                                                                                                                         aatagacaaaaactctgtgtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGt                                                      >  2:64377‑M2/61‑251 (MQ=255)                                                                                                                                                                                          atagacaaaaactctgagtgtaataatgttgcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGtt                                                     <  1:399787‑M2/192‑1 (MQ=255)                                                                                                                                                                                          atagacaaaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGtt                                                     >  1:41686‑M2/60‑251 (MQ=255)                                                                                                                                                                                            agacaaaaactctgagtgtaataacgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTAt                                                   >  2:471170‑M2/58‑251 (MQ=255)                                                                                                                                                                                                     ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGt                                           >  1:457723‑M2/49‑250 (MQ=255)                                                                                                                                                                                                         gatttgaatattgtatcctgttgtcttgcgaggataattgcattCCTTACTTTCAGGACGTTTTGGCCCATGTCCCGC‑TTTTGGTTTTGTAGTTTGGCCCTGGTTTTCCTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGt                                      <  2:261032‑M2/207‑1 (MQ=255)                                                                                                                                                                                                         gagtggaataatgtagcttcttgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTATCCTTTGTCCCGC‑TTTTTGATTTGTAGTTTTGCCTTGGTTTTACTTTATCCCGCCGTGATTGATATGTACCTCGTTGGTTTACCGCGCAGCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGTAGCTGCGATGTTATTTGCCGGTaaa                                        <  1:398594‑M2/205‑1 (MQ=255)                                                                                                                                                                                                          agtgtaataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGANGGCAGCTGCGATGTTATTTGCCGGCAAAGTg                                     >  2:254590‑M2/44‑251 (MQ=255)                                                                                                                                                                                                            gggaataatgtagccgcttgtcttgcgaggataagtgcattCCTTACTATCAGGCCGCTTTAGCCGTTGTCCCGC‑TTTTTTATTTGGAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCTTCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGGATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGc                                   <  2:396782‑M2/210‑1 (MQ=255)                                                                                                                                                                                                                ataatgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGGAAAGTGGCCGAt                               >  2:493217‑M2/38‑251 (MQ=255)                                                                                                                                                                                                                   atgtagcctcgtgtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCACTGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTTCGATGTTATTTTCCGGTAAAGTGGCCGGTCGt                            >  2:269368‑M2/35‑251 (MQ=255)                                                                                                                                                                                                                               gtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCTC‑TTTTTGATTTGTAGttt                                                                                                                                                                                                  <  2:414192‑M2/51‑1 (MQ=255)                                                                                                                                                                                                                               gtcttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGttt                                                                                                                                                                                                  >  1:414192‑M2/23‑73 (MQ=255)                                                                                                                                                                                                                                  ttgcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGcc              <  1:493217‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                                    gcgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTCAAGTGGCCGATcgttcagggagaccgctggt           >  1:255855‑M2/18‑243 (MQ=255)                                                                                                                                                                                                                                     ggaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTc          <  2:41686‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                     cgaggataagtgcattCCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTCCTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTc          <  2:271919‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                             ggtgcatcCCTTACGACCAGGACGCTTTACCNCA‑GTCCCCCTTTTTTGATTGTTAGTTTTGCCCTGGTTTTACTTTACCCCGCCGGGATTGATATGTTCCTCGTTGGTTTCCCGCGCACCGCCGCCGATCTCAATGCCAGCGAAGCGCAGGTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATAcc  <  2:255855‑M2/243‑1 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                    GCTCGCAAGAAGTTTCCCAATCAGATGTTCACGGTCTGGGGCGGCAATCTTATTCCGGCGATTGTCATTCTCTTTGGTATAACCGTGATTTTGTGCTGGTTCGGCAACGTCTTTAACGTGTTACCTAAATTTGGCTAAATCCTTCAAGAAGCCAGCCATTCGCTGGCTTCTTGCCTCTCAGGAAATCACTTATGTCCAAATGGCAACTCGCCTGATCCTCCTTCACCACGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGC‑TTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACC  >  NC_000913/3891346‑3891832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑