Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,888,435	Δ3,155 bp		[tnaC]–tnaB	[tnaC], tnaA, tnaB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3888435	3891589	3155	60 [0]	[0] 60	[tnaC]–tnaB	[tnaC],tnaA,tnaB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3888434	0 (0.000)	60 (0.920)	55/478	0.0	100%	intergenic (+242/‑1)	mnmE/tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
	?	NC_000913	3891590 =	0 (0.000)					intergenic (+107/‑25)	tnaB/mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL

AACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGATTAGATTCAATGTGATCTATTTGTTTGCTATATCTTAATTTTGCCTTTTGCAAAGGTCATCTCTCGTTTATTTACTTGTTTTAGTAAATGATGGTGCTTGCATATATATCTGGCGAATTAATCGGTATAGCA  >  NC_000913/3888191‑3888677                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    aaCCGCGCTTACGAAGCCGCATTCTGACTGTCAGATTCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCATTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttac                                                                                                                                                                                                                                               <  2:13077‑M1/250‑7 (MQ=255)      cgcTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGGTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcag                                                                                                                                                                                                                                         <  2:344817‑M1/251‑13 (MQ=255)             gAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctt                                                                                                                                                                                                                                  <  2:443424‑M1/251‑20 (MQ=255)                              gTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctt                                                                                                                                                                                                                 <  2:321301‑M1/251‑37 (MQ=255)                                cAGATGCTTCTTCGCTTCCTTATCACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCACCCCGAACGAGTGTTATTCGATTCACATTTAAACAATTTCAGAATATACAAAAACTCTGAGTGTAATAAGGTATCCTCGTGTGTCGCGAGGATAAGTGCATTccttactaccaggacgctttagcccatgtcccgctttt                                                                                                                                                                                                               <  1:311716‑M1/251‑39 (MQ=255)                                  gATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttg                                                                                                                                                                                                             <  1:364790‑M1/251‑41 (MQ=255)                                   aTGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttga                                                                                                                                                                                                            <  2:462645‑M1/251‑42 (MQ=255)                                     gCGGCTGCTCTTGATTGTTACCACTCCAGTTATTCCTCAACCCTTTTTTTAAACCTTAAAATTCTTACGTAGTTTATAATCTTTAAAAATAGCATTTAATATTGCTCCCCGCACGATTGTGATTCGAATCACATTTAAACAATTTCAGAATAGACAAAAACTCTTAGGTTAATAATGTAGCCTCGTGTCTTGAGAGGATAAGTGCATTccttactatcaggccgctttatccactatcccgctttttgagt                                                                                                                                                                                                          >  2:322741‑M1/1‑208 (MQ=255)                                              cttcATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagtttt                                                                                                                                                                                                 >  1:414445‑M1/1‑199 (MQ=255)                                                     gTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctg                                                                                                                                                                                           <  2:116859‑M1/250‑59 (MQ=255)                                                                 gTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttat                                                                                                                                                                               <  2:478614‑M1/250‑71 (MQ=255)                                                                    aTTCCTCATCCCATTTTTTAAGCATTAAAATGCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATAGTGCTCCCCGAACGATTGTGAGTCTATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGTCTCGTGTCTTGCTAGGATAAGTGCATTccttactatcaggtcgctttagcccatgtcccgcttgttgatgtgtagttttgccctggttttactttatccc                                                                                                                                                                            <  2:51445‑M1/250‑74 (MQ=255)                                                                       ccTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTTATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgcc                                                                                                                                                                         <  2:258380‑M1/250‑77 (MQ=255)                                                                        cTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgg                                                                                                                                                                       >  1:253764‑M1/1‑173 (MQ=255)                                                                          cAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgg                                                                                                                                                                       <  1:79490‑M1/249‑79 (MQ=255)                                                                             cccTTTTTTTAAACATTAAAATTCTTACGTAATTTAT‑ATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattga                                                                                                                                                                 <  1:320614‑M1/251‑85 (MQ=255)                                                                                 ttttttAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatat                                                                                                                                                              >  1:205330‑M1/1‑164 (MQ=255)                                                                                     ttAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtac                                                                                                                                                          >  2:115451‑M1/1‑160 (MQ=255)                                                                                           aTTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATCCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgtt                                                                                                                                                    >  1:485034‑M1/1‑154 (MQ=255)                                                                                              aaaaTTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATCCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggt                                                                                                                                                 <  2:485034‑M1/251‑101 (MQ=255)                                                                                                 aTTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggttta                                                                                                                                              <  2:65262‑M1/251‑104 (MQ=255)                                                                                                 aTTCTTACGTAATTTATAATCTCTAACAAAAGCATTTAATATTGCTCCACGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttc                                                                                                                                              >  1:117834‑M1/1‑148 (MQ=255)                                                                                                 aTTCTTACCTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggttta                                                                                                                                              <  2:359986‑M1/251‑104 (MQ=255)                                                                                                    cTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggccgctttagcccatgtcccgctttttgatttgtcgttttgccctggttttcctttatcccgccgggattgctatgtacctcgttggtttaccg                                                                                                                                           >  2:50197‑M1/1‑145 (MQ=255)                                                                                                           aaTTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatc                                                                                                                                     <  1:226035‑M1/250‑113 (MQ=255)                                                                                                                ataATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgcc                                                                                                                               <  1:350538‑M1/251‑119 (MQ=255)                                                                                                                ataATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccct                                                                                                                                                                                            <  2:239340‑M1/190‑58 (MQ=255)                                                                                                                ataATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccct                                                                                                                                                                                            >  1:239340‑M1/1‑133 (MQ=255)                                                                                                                ataATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGAATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgcc                                                                                                                               >  2:325571‑M1/1‑133 (MQ=255)                                                                                                                 taATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGCTTCGATTACCATTTCAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATACTGTAGCATCGTGTCTTGCGAGGATACGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatctgtagttttgccctggtttcactttatcccgccgggattgatatntacctcgttggtttaccgcgcctctccgccg                                                                                                                              >  2:219894‑M1/1‑132 (MQ=255)                                                                                                                                       atatTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatggcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgc                                                                                                         >  2:319472‑M1/1‑110 (MQ=255)                                                                                                                                         atTGCCCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctgtttttactttaccccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagt                                                                                                      <  2:47527‑M1/251‑144 (MQ=255)                                                                                                                                                  cGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattg                                                                                             >  1:396782‑M1/1‑99 (MQ=255)                                                                                                                                                     aCGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgt                                                                                          <  1:389931‑M1/251‑156 (MQ=255)                                                                                                                                                                  gattcACATTTAAAAAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCTTTccttactatcaggacgctttagcccatgtcccgttttttgttttttagttttgccctggttttactttacaccgccgggattgatatttacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatct                                                                             <  1:218550‑M1/251‑169 (MQ=255)                                                                                                                                                                         aTTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcgggg                                                                      >  1:438535‑M1/1‑76 (MQ=255)                                                                                                                                                                          tttAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcgggg                                                                      >  1:13207‑M1/1‑75 (MQ=255)                                                                                                                                                                          tttAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCACGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcgggg                                                                      >  1:271919‑M1/1‑75 (MQ=255)                                                                                                                                                                              aaCAATTTCAGAATAGACAAAAACTTTAAGTNTAATAATGTAGCCTCGTGTCTGGCGAGGATAAGTGCATTccttactatcaggacgttttagcccatgtcccgctttttgatttgtagttttgccttggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggc                                                                 <  2:249373‑M1/251‑181 (MQ=255)                                                                                                                                                                                    ttCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgc                                                           >  1:483100‑M1/1‑65 (MQ=255)                                                                                                                                                                                      cAGAATAGACAAAAACTCTGAGTGTAATACTGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccctgtcccgctttttgatttggagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgacgccgatctcaatgccagcgaagcgcagttgcatcttgcgttctccgtctatatggcggggatggcagctgcgg                                                         >  2:468489‑M1/1‑63 (MQ=255)                                                                                                                                                                                      cAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcg                                                          <  1:115451‑M1/250‑188 (MQ=255)                                                                                                                                                                                         aaTAGACAAAAACTCTGTGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgt                                                      >  2:64377‑M1/1‑60 (MQ=255)                                                                                                                                                                                          aTAGACAAAAACTCTGAGTGTAATAATGTTGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgtt                                                     <  1:399787‑M1/251‑193 (MQ=255)                                                                                                                                                                                          aTAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgtt                                                     >  1:41686‑M1/1‑59 (MQ=255)                                                                                                                                                                                            aGACAAAAACTCTGAGTGTAATAACGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttat                                                   >  2:471170‑M1/1‑57 (MQ=255)                                                                                                                                                                                                     ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccggt                                           >  1:457723‑M1/1‑48 (MQ=255)                                                                                                                                                                                                         gatttgaatattgtatcctgttgtcttgcgaggataattgcattccttactttcaggacgttttggcccatgtcccgcttttggttttgtagtttggccctggttttcctttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccggtaaagt                                      <  2:261032‑M1/230‑208 (MQ=255)                                                                                                                                                                                                         gAGTGGAATAATGTAGCTTCTTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttatcctttgtcccgctttttgatttgtagttttgccttggttttactttatcccgccgtgattgatatgtacctcgttggtttaccgcgcagcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggtagctgcgatgttatttgccggtaaa                                        <  1:398594‑M1/249‑206 (MQ=255)                                                                                                                                                                                                          aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcgggganggcagctgcgatgttatttgccggcaaagtg                                     >  2:254590‑M1/1‑43 (MQ=255)                                                                                                                                                                                                            gggaataatgtaGCCGCTTGTCTTGCGAGGATAAGTGCATTccttactatcaggccgctttagccgttgtcccgcttttttatttggagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcttcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccggatatctggcggggatggcagctgcgatgttatttgccggtaaagtggc                                   <  2:396782‑M1/248‑211 (MQ=255)                                                                                                                                                                                                                ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccgggaaagtggccgat                               >  2:493217‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                   atGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcactgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagcttcgatgttattttccggtaaagtggccggtcgt                            >  2:269368‑M1/1‑34 (MQ=255)                                                                                                                                                                                                                               gtCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtccctctttttgatttgtagttt                                                                                                                                                                                                  <  2:414192‑M1/73‑52 (MQ=255)                                                                                                                                                                                                                               gtCTTGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttt                                                                                                                                                                                                  >  1:414192‑M1/1‑22 (MQ=255)                                                                                                                                                                                                                                  ttGCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccggtaaagtggccgatcgttcagggagaaagcc              <  1:493217‑M1/250‑232 (MQ=255)                                                                                                                                                                                                                                    gCGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccggtcaagtggccgatcgttcagggagaccgctggt           >  1:255855‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                                     ggaGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttactttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccggtaaagtggccgatcgttcagggagaaagccggtc          <  2:41686‑M1/250‑236 (MQ=255)                                                                                                                                                                                                                                     cGAGGATAAGTGCATTccttactatcaggacgctttagcccatgtcccgctttttgatttgtagttttgccctggttttcctttatcccgccgggattgatatgtacctcgttggtttaccgcgcatcgccgccgatctcaatgccagcgaagcgcagttgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccggtaaagtggccgatcgttcagggagaaagccggtc          <  2:271919‑M1/251‑236 (MQ=255)                                                                                                                                                                                                                                             ggtGCATCccttacgaccaggacgctttaccncagtcccccttttttgattgttagttttgccctggttttactttaccccgccgggattgatatgttcctcgttggtttcccgcgcaccgccgccgatctcaatgccagcgaagcgcaggtgcatattgcgttctccgtatatctggcggggatggcagctgcgatgttatttgccggtaaagtggccgatcgttcagggagaaagccggtcgccatacc  <  2:255855‑M1/250‑244 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    AACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGATTAGATTCAATGTGATCTATTTGTTTGCTATATCTTAATTTTGCCTTTTGCAAAGGTCATCTCTCGTTTATTTACTTGTTTTAGTAAATGATGGTGCTTGCATATATATCTGGCGAATTAATCGGTATAGCA  >  NC_000913/3888191‑3888677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑