mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 847,444 | 0 | G | T | 30.0% | 78.3 / 11.5 | 40 | I187I (ATC→ATA) | glnH | L‑glutamine ABC transporter periplasmic binding protein |
| * | NC_000913 | 4,287,710 | 0 | G | A | 29.0% | 50.0 / 10.1 | 31 | intergenic (+43/‑54) | ytcB/nrfA | protein YtcB/cytochrome c552 nitrite reductase |
| * | NC_000913 | 3,556,200 | 0 | G | A | 28.9% | 55.5 / 16.0 | 39 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 2,248,424 | 0 | C | A | 25.6% | 73.5 / 12.9 | 39 | V37F (GTT→TTT) | lysP | lysine:H(+) symporter |
| * | NC_000913 | 1,174,626 | 0 | G | A | 24.5% | 80.5 / 15.0 | 49 | F180F (TTC→TTT) | ycfT | inner membrane protein YcfT |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 38 (0.740) | 3 (0.070) | 3/440 | 4.8 | 8.7% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 29 (0.630) | intergenic (‑552/+227) | ynaM/uspF | protein YnaM/universal stress protein F | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 3 (0.060) | 3/490 | 5.2 | 6.4% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3746424 = | 44 (0.860) | coding (331/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate:Na(+) symporter ‑ periplasmic binding protein | |||||
| * | ? | NC_000913 | 1894430 = | 34 (0.660) | 3 (0.060) +C |
3/490 | 5.2 | 10.9% | coding (298/300 nt) | yoaC | DUF1889 domain‑containing protein YoaC |
| ? | NC_000913 | = 4410036 | 15 (0.290) | intergenic (+30/‑97) | rlmB/yjfI | 23S rRNA 2'‑O‑ribose G2251 methyltransferase/DUF2170 domain‑containing protein YjfI | |||||
| * | ? | NC_000913 | = 1050545 | NA (NA) | 3 (0.060) | 3/490 | 5.2 | 6.4% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3746424 = | 44 (0.860) | coding (331/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate:Na(+) symporter ‑ periplasmic binding protein | |||||
| * | ? | NC_000913 | 194878 = | 47 (0.910) | 3 (0.060) | 3/492 | 5.2 | 5.8% | intergenic (+34/‑25) | ispZ/ispU | small regulatory RNA IspZ/ditrans,polycis‑undecaprenyl‑diphosphate synthase [(2E,6E)‑farnesyl‑diphosphate specific] |
| ? | NC_000913 | = 924246 | 51 (0.990) | coding (983/2277 nt) | clpA | ATP‑dependent Clp protease ATP‑binding subunit ClpA | |||||