Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,506,416	Δ45 bp	coding (245‑289/537 nt)	sutR →	DNA‑binding transcriptional dual regulator SutR

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1506416	1506460	45	37 [0]	[0] 37	sutR	DNA‑binding transcriptional dual regulator SutR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1506415	0 (0.000)	37 (1.040)	34/462	0.2	100%	coding (244/537 nt)	sutR	DNA‑binding transcriptional dual regulator SutR
	?	NC_000913	1506461 =	0 (0.000)					coding (290/537 nt)	sutR	DNA‑binding transcriptional dual regulator SutR

ACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACTGGCAGAAGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAATTGCCACCGGGTTGAACGTACCATTTTCAACATTTATTTCTCCGCCGCAGTCCGCTACGCCTTCAGTTTATGATCCACAACAGCAGGCGATGGTGATCACTTCGCTGTTTCCTTATGATCCACAACTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCATCCATTA  >  NC_000913/1506216‑1506695                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                           catggaaaatctcgctcgctttttatccaccacacttaaacaactacgccagcagcgcggctggagtctttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCt                                                                                                                                                                                                                                       <  1:277101‑M2/6‑1 (MQ=255)  atggaaaatctcgctcgctttttatccaccacccttaaacaactacgccagcagcgcggctggagtctttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGctg                                                                                                                                                                                                                                      <  2:195198‑M2/7‑2 (MQ=255)                 cgctttttatccaccacacttaaacaactacgccagcagcgcggctggagtctttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGAt                                                                                                                                                                                                                       <  2:2818‑M2/22‑1 (MQ=255)                                                  cagcagcgcggctggagtctttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacagttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGAc                                                                                                                                                                                      <  1:370270‑M2/55‑1 (MQ=255)                                                     cagcgcggctggagtctttcgcgacaggcagaagcgacgggcgtttctcaagcaatgttagggcagcttgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtacccttttcaacatttatttctccgccgcagtacgctacgccttcagtttatgatccacaacTCTGCTTTGACCACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGcc                                                                                                                                                                                   >  2:322577‑M2/194‑251 (MQ=255)                                                      atcgcggctggagactttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgcgtccagtccgacggtcgcgacattatggaaaattgccaccgggttggacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGCGCAATAAGCGAATCGACGccc                                                                                                                                                                                  >  2:256747‑M2/193‑251 (MQ=255)                                                      agcgcggctggagtctttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGccc                                                                                                                                                                                  >  1:101506‑M2/193‑251 (MQ=255)                                                        cgcggctggagtctttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacGCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCa                                                                                                                                                                                <  1:183753‑M2/61‑1 (MQ=255)                                                         gcggctggagtctttcgcgactggcagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCAt                                                                                                                                                                               <  2:275363‑M2/62‑1 (MQ=255)                                                                          cgactggaagaagcgacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATCAGCGAATCGACGCCCCGTGAGAAGGGGGTAATCg                                                                                                                                                               >  2:274948‑M2/173‑250 (MQ=255)                                                                                        gacgggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATgtcgtcgtc                                                                                                                                                 >  1:136388‑M2/159‑250 (MQ=255)                                                                                           gggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgaaacacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTg                                                                                                                                             >  1:110790‑M2/156‑251 (MQ=255)                                                                                            ggcgtttctaaagcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTg                                                                                                                                             >  1:61215‑M2/155‑250 (MQ=255)                                                                                                        gcaatgttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTg                                                                                                                                 >  1:237239‑M2/143‑250 (MQ=255)                                                                                                              ttagggcagattgagcgtaatgagtccagtccgacggtcgcgacattatggaaacttgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCtgtg                                                                                                                          >  1:147949‑M2/137‑251 (MQ=255)                                                                                                                             ggtaatgagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCATTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATg                                                                                                           <  2:259654‑M2/130‑1 (MQ=255)                                                                                                                                   gagtccagtccgacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGAc                                                                                                     <  1:288125‑M2/136‑1 (MQ=255)                                                                                                                                              gacggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccactacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATtgtg                                                                                          >  2:178428‑M2/105‑251 (MQ=255)                                                                                                                                               acggtcgcgacattatggaaaattgccaccgggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTgg                                                                                         <  1:170609‑M2/148‑1 (MQ=255)                                                                                                                                                                              ggttgaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACg                                                          <  2:61215‑M2/179‑1 (MQ=255)                                                                                                                                                                                  gaacgtaccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCata                                                      <  1:277963‑M2/183‑1 (MQ=255)                                                                                                                                                                                         ccattttcaacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCg                                               >  1:129008‑M2/62‑251 (MQ=255)                                                                                                                                                                                                 aacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATgtcgtcg                                                                                                                                                   <  2:268123‑M2/90‑1 (MQ=255)                                                                                                                                                                                                 aacatttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAAtggtg                                       <  2:41260‑M2/198‑1 (MQ=255)                                                                                                                                                                                                 aacatttatttctccgccgcagtccgctacgccttcagtttatgatcaacaccTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAAtggtg                                       >  2:54129‑M2/54‑251 (MQ=255)                                                                                                                                                                                                   catttatttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTggg                                     >  1:46795‑M2/52‑251 (MQ=255)                                                                                                                                                                                                          ttctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCaa                               >  2:83748‑M2/45‑250 (MQ=255)                                                                                                                                                                                                            ctccgccgcagtccgctacgccttcagtttctgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATACGCGAATCGACGCCCCCTGCGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGa                                   >  1:348377‑M2/43‑244 (MQ=255)                                                                                                                                                                                                            ctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGa                                   <  2:348377‑M2/202‑1 (MQ=255)                                                                                                                                                                                                            ctccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAAcc                            >  1:56880‑M2/43‑251 (MQ=255)                                                                                                                                                                                                             tccgccgcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCg                           >  1:82142‑M2/42‑251 (MQ=255)                                                                                                                                                                                                                   gcagtccgctacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCGTACAtt                     <  2:129008‑M2/216‑1 (MQ=255)                                                                                                                                                                                                                        ccgctacgccttcagtttatgatccgcaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAATGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATCGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGTAGCAAACCGTCCATTTTCa                 <  2:179430‑M2/220‑1 (MQ=255)                                                                                                                                                                                                                            tacgccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGCCGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCGTACATTTTCATTccc            >  2:23164‑M2/27‑251 (MQ=255)                                                                                                                                                                                                                                ccttcagtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCAt        <  2:101137‑M2/229‑1 (MQ=255)                                                                                                                                                                                                                                     agtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCATCCAtt   >  2:207406‑M2/18‑251 (MQ=255)                                                                                                                                                                                                                                      gtttatgatccacaacTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCATCCATTa  <  1:312745‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                           ACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACTGGCAGAAGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAATTGCCACCGGGTTGAACGTACCATTTTCAACATTTATTTCTCCGCCGCAGTCCGCTACGCCTTCAGTTTATGATCCACAACAGCAGGCGATGGTGATCACTTCGCTGTTTCCTTATGATCCACAACTCTGCTTTGAACACTTCTCGATTCAGATGGCATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATCTGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGTAATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCATCCATTA  >  NC_000913/1506216‑1506695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑