mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 244,775 | 0 | G | A | 52.9% | 10.9 / 112.6 | 90 | G150D (GGC→GAC) | yafJ | putative glutamine amidotransferase YafJ |
| * | NC_000913 | 245,662 | 0 | G | A | 49.2% | 6.0 / 95.9 | 65 | I48I (ATC→ATT) | dpaA | peptidoglycan meso‑diaminopimelic acid protein amidase A |
| * | NC_000913 | 3,875,532 | 0 | A | T | 27.3% | 49.3 / 11.2 | 33 | H32L (CAT→CTT) | yidX | putative lipoprotein YidX |
| * | NC_000913 | 377,402 | 0 | G | A | 24.2% | 88.1 / 35.9 | 62 | intergenic (+91/+133) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 4,457,105 | 0 | A | G | 23.5% | 129.8 / 13.9 | 68 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 377,407 | 0 | C | T | 22.8% | 88.6 / 33.3 | 58 | intergenic (+96/+128) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 375,671 | 0 | A | G | 20.4% | 244.7 / 10.6 | 111 | G71G (GGA→GGG) | mhpT | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 696741 | 27 (0.550) | 4 (0.120) | 4/338 | 2.9 | 15.8% | intergenic (‑1/+15) | metU/glnW | tRNA‑Met/tRNA‑Gln |
| ? | NC_000913 | 697135 = | 24 (0.720) | intergenic (‑2/+378) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||