| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,457,105 | 0 | A | G | 23.5% | 129.8 / 13.9 | 68 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| Reads supporting (aligned to +/- strand): ref base A (9/43); new base G (16/0); total (25/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGCCGCGCTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAAT > NC_000913/4456860‑4457355 | aGCCGCGCTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTTGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCTG‑TTGT‑GGTTGGATC‑CAt < 2:305786/251‑1 (MQ=255) gCCGCGCTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATc < 2:441076/251‑1 (MQ=255) gcTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑CTTT‑TGTGGGATA‑CATccgca > 1:360885/1‑246 (MQ=255) gcTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGACTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGGGATGAGCCACGGCGG‑TTTT‑GGGGGGaaaccagcgaa > 1:206869/1‑240 (MQ=255) gcTCGAAGACCATGAAGATGGTGATCTGCAAAGACGATCTGGCACCTGCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAGCCGGAGTATAGTCCGTGGCAGGGGGCAGAAGTGGCAGAAGCCTGGGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATAGGGTGTTG‑GAAAGCGCTCAGACTGGCGTACAGATTCGGGTGATGAGCAATGTCGG‑GTGT‑TGTGGAATC‑CATCAGaaa < 2:506590/251‑1 (MQ=255) aaTACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGGGGGGTC‑CATccaaaaatgct > 1:4540/1‑241 (MQ=255) aTACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑GTTT‑GGTGGGAGC‑CATCCGAAA‑ctgctg > 1:132063/1‑251 (MQ=255) cATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATAGTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCATGCGTTCAGCCTGCCCACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAGACCGCTCAGCCTGGCGACCATATTCTGGTGATGATCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATg < 1:36644/251‑1 (MQ=255) aTGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑atgcttggtgg > 1:412142/1‑245 (MQ=255) aTGAAAATGGGGATCTGCAAAGACGATCTGGCACCGTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTA‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATgg < 1:150533/251‑1 (MQ=255) aTGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGc < 1:19815/251‑1 (MQ=255) tGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑GTTT‑TGTGGGGTT‑CCTCACAAA‑CTGGTTGGTGGGCTggggagaaaagg > 2:372248/1‑241 (MQ=255) gCAAAGACGATCTGGCTCCTTCATAAGGTCGGGCCGATGAAGTCTGCCTGCTGCAACCGGCGCATATTCCGTGGCAGTTGGCAGAAGTTGCAGAAGCATGCGTTGAGCCGGCACACTGGAGTGGTGATGTGGATACGCTGGCTGATATGG‑GGTGGAAAACCGCTCAGCCTGGCGACCAGATTCTGGTGGTTAGCAACGGCGG‑TTTT‑GGTGGGATC‑CTGCATAAA‑CTGCTGGTTGGGGTGGGT‑AAGAAGGCg < 2:244790/251‑1 (MQ=255) gCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTTTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑aagaag < 2:482529/248‑1 (MQ=255) gCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCg < 2:48234/251‑1 (MQ=255) gCAAAGACGATCTGGCACCTTCAGTAGTTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGGGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCGCAGCCGGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTG‑GTTTGGATC‑CATCATAAA‑CGGCTGGAAGGGCTGGCT‑AAGAAGGc < 2:238491/250‑1 (MQ=255) cAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGAGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATCCGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTTTGGGGGGA‑C‑CATCCGAAA‑ATGCTGGATGGGcggggggagaaagcgg > 1:481232/1‑236 (MQ=255) cTGGCACCTTCATTAGGTCGTGCCGCGGAAGTCTTCCTGCTGCACCCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGACGCCTGCGTTCAGCCTGCACACTGGAGTGGCGAAGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGGCCATATTCTGGTGATGAGCAACGACGG‑GTTT‑GGTGGGGTCACA‑CAGAAA‑CTGCTGGCTGGGGTggaggcagaagcgggaacggcgcg > 2:359463/1‑229 (MQ=255) ggctcctgcatgagggcGTGCCGATGAAGTCTGCCTGCTGCAACCGGGGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTTCACACTGGATTGGCGATTTGGATACGCGGGCAGAGATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCAGATGCTGGTGATGAGCAACGGCGG‑CTTT‑GGTGGGATC‑CATCAGAAA‑CGGCTGGATGGGTTGGCG‑AAGGAGGCGG‑AAGcgtcgcag < 2:225450/234‑8 (MQ=255) ggCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCa < 1:215196/249‑1 (MQ=255) ccACCTTCGTTAGGTCGTGCCTATGAGGTCTGCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGGAGGAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGGTCAGCCTGGCGACCATATGCTGGTGATGAGCAACGGCGG‑TTTT‑TGTGTGATC‑CATCAGAAA‑CTGCTGGATGTGCTGGCG‑AAGAAAGCGG‑AAGCCGCTCAG‑Ta < 2:66911/250‑1 (MQ=255) caatAGGGCGTGCCGATGAAGTCGTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATGCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCGGGATGGGCTGTCG‑AAGAAGGCGG‑AAGGCGCGCAG‑TAATTCGGc < 1:438021/248‑1 (MQ=255) ggTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGCGCAACGGCGG‑TTTT‑TGGGGGATC‑CCTCATAAA‑CTGCTGGGTGGGGTGGCG‑AAGAAAGCGG‑GAGCCGCGCCG‑TAATTTGGcccta > 1:238661/1‑247 (MQ=255) cGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑GTTT‑TGTGGGGTT‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTCGCCCGata > 1:274556/1‑250 (MQ=255) gATGAAGTCTGCCTGCTGCAACCGGCGCATATTCCGTGGAAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGAGACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGAGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCGTAGCCAGAtata < 1:417499/251‑1 (MQ=255) aGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGCTATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑TGTGGGGGC‑CCTTCGACA‑CTGCCGGGTGGGCTGGCG‑GAGGAGGCGGGAGGCCG‑GCAGGAAATTCG‑CCTTAGGCCGATATAGTA‑Tg > 2:323947/1‑251 (MQ=255) cctCCTGCTGCAACCGGCGCATAGTCCGTGGCAGGTGGCAGAAGGGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTTGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑GAATTCGGCCTTAGCCAGATATAGTA‑TGCg < 2:350238/248‑1 (MQ=255) tgcAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGGGGGGGC‑CATCCGAAA‑AAGCTGGATGGGGTGGCGGAAAAAGG‑GG‑AAGCACCGGCG‑AAATTCGGCCTTAGCCAGGTATAGTA‑TGCGGAGGGCggg > 1:225073/1‑250 (MQ=255) ccGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAgg < 1:410702/251‑1 (MQ=255) ggCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑ATTT‑GGGGGGGTC‑CATCAGGAA‑ATGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAAACGCGCAG‑TAATTCGGGCTTATCCCGAAATAATA‑AGCGTAGGCCGGGAAAGGCg > 1:277306/1‑251 (MQ=255) cATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGGGGGGAC‑CATCAGAAA‑CTGCTGGGTGGGCGGGGG‑GAGGAGGCGG‑AAGGCGCGCAG‑GAATTTGGCCTTAGCCAGATATAGTA‑TTCGGAGGCCGGGTAAGGCggtc > 1:514024/1‑247 (MQ=255) tCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑GAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCAcgcc < 1:90701/250‑1 (MQ=255) gtggcaggttgtagAAGTGGCAGAAGCTTGCGTTCAGCCTTCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCAt < 2:269321/251‑1 (MQ=255) ggcaggtggcagAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑GTTT‑GGGGGGGTC‑CCTCAAAAA‑ACGCTGGGTTGGGTGGGG‑GAAAAGGCGG‑GAGCCGCGCCG‑GAATTAGGCCTTCTCCCGATATAGTT‑TGCGTAGGCCGGGGAAGGCGTTCAcgccccctcc > 2:227411/1‑245 (MQ=255) ggtggcagAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCGGATATAGTA‑TGCGTAGGCCGGATAAGGCTTTCACGCCGCATCCGGC‑a < 1:438927/251‑1 (MQ=255) gaagaagtggcagaagCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTg < 1:347511/249‑1 (MQ=255) gTTCAGCCTGCACACTGGAGGGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACg < 2:162924/251‑1 (MQ=255) ccTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGGTC‑CATCAAAAA‑ATGCTCGGTGGGCTGGCG‑AAGAAAGCGG‑AAGCCGCCCCG‑TAATTTAGCCTTAGACAGATTTAGTT‑TGCGTAGGCCGGGTAAGGCGTTTACGCCGCATCCCGC‑ATTTGAG‑CATAGAGCCTGATGCGGAGCTTG‑At > 1:174889/1‑251 (MQ=255) tGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGGG‑AAACCAGCTCAGCCTGGCGAACATATTCAGGTGATGAGCAACGGCGG‑TTTT‑TGTGGGGTC‑CCTTAGAAA‑CTAATGGGAGGGCTGGGG‑AAGAAGGGGG‑AAGACGCGCCG‑GAAATTGGCCTTAGCCAGATATAGAC‑TGCGGAGGCCGGATAAGGGGGTCACGCCGCATCCGGC‑GTTTGCG‑CCTAGTGACTGATGAGACGCTTG‑ATGc > 1:342534/1‑251 (MQ=255) acacTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCt < 1:349900/231‑1 (MQ=255) acacTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGGGGGAGC‑CATTAGAAA‑CTGCCGGAAGGGCTGGGG‑GAGAAAGGGG‑AAGGCGCGCCG‑GAATTCGGCCTTTGCCAGATATAGGA‑TTCGTAGGGCGGGTAAGGCGTGCAAGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCtagatcggaagaggggcgtgg > 2:349900/1‑231 (MQ=255) ggtgtcGATGTGTATACGCTGGCAGATATGGTGTTG‑AAAACCGCGCAGCCTGGCGACCATATTCTGGTGATTAGCATTGGCGG‑TTGT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATATTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAg < 2:468190/246‑1 (MQ=255) gCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTAGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCt < 1:94975/251‑1 (MQ=255) gtgGATACGCTGGCAGATATGGTGGGG‑AAAACCGCACAGCCTGGCGACCATATTCTGGTGATGAGCATCGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAGGGCGTGCACGCCGCATCCGGC‑ATGTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAg < 2:430664/250‑1 (MQ=255) tgGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCCTATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGGGGGGTC‑CCTCAAAAA‑ATTCTGGGTGGGCTGGGG‑AAGAAGGCGG‑AAGGCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGGGGAGGCCGGATAAAGGGGTCAAGCCGCCTCCGGCCTTTTGA‑‑CATAGTGCCTGATGCGTCGCtttgttagccttattagtcccaccggg > 2:126732/1‑226 (MQ=255) cAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CAACAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCg < 2:155070/251‑1 (MQ=255) ggtggtG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGGTC‑CATCAGAAA‑CTGCTGGATGGGGTGGCG‑AAGAAGGCGG‑AAGCCGCGCCG‑TAATTCGGCCTTTGCCAGATATAGGA‑TGCGGAGGCCGGGTAAGGCGGTCACGCCGCATCCGGC‑ATTTTAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATTAGGCCTACAGGGGCACCCTATCCGGCAAAcc > 1:167538/1‑251 (MQ=255) gttggg‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCa < 1:163464/246‑1 (MQ=255) tggtg‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGGATTTT‑GG‑GGGGCC‑CCCCAAACA‑CAGCTGGGTTGGGTGGGG‑CAGAAGGAGG‑GAGGCACGCAG‑GAATTCCACCTTAGCCAGATATAGTAATG‑GTAAGGCGGAGAAGGAGGTCAAGCCCCCTCCGGC‑ATTTGTGACA‑AGTGGCAGATGCGACACGTGTAT‑CGGCTTATCCGGCCCACAGGTGCACCGTATCCGGCCAACCa > 2:194870/1‑250 (MQ=255) aaaCCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑ATGCTGGATGGGCTGGCG‑AAAAAAGCGG‑GAGCCGCGCCG‑TAATTCGGCCTTAGCCAGAAATAGTA‑AGCGGAGGCCGGATAAGGCGTTCACCCCGCATCCGGC‑ATTTGTG‑CCTAAAGCCTGGAGCGACGCTTG‑ATGGGTCTTATTAGGCCTACAAGAGCACCGCAACCGGCAAACCCTACttcc > 1:37931/1‑248 (MQ=255) gCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATcaa < 1:404097/251‑1 (MQ=255) cAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATcaacaa < 1:435279/251‑1 (MQ=255) cAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATcaaca < 1:477655/250‑1 (MQ=255) cAGCCTGGCGACCATATTCTGGTGAGGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCAGACTCACATcaacaa < 2:379843/251‑1 (MQ=255) gccgggCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACg < 1:88241/247‑1 (MQ=255) ccTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGGGGGGTT‑CATCAGAAA‑CAGATGGCTGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAAGTTGGCCTTAGCAAGGTGTTGTA‑TGCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC‑ATTTGAG‑GCGAATGCCTGATGGGACGCTTG‑GTGCGGCCTATTTGGCCTACAGGGGCACCCTATCCCGCAAACAATACCCCCTTCAACAACg > 1:378680/1‑250 (MQ=255) ggCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGaa < 1:234317/249‑1 (MQ=255) atTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCtt < 1:429274/250‑1 (MQ=255) atTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTCATGGGTGGGGTGGCG‑AAGAAGGCGG‑GAACCGCGCAG‑TAATTTGGCCTTCGCCAGATATAGTA‑TGCGTAGGGCGGGTAAGGCGGTCACGCCCCATCCGGC‑ATTTTAG‑CCTATCGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCGCCGCATCCGGCAACCCATACTCACCTCAACAAAGaaactttcccctc > 1:261844/1‑241 (MQ=255) atTCTGGTGATGAGCAACGGCGG‑TTTT‑GGGGGGGTC‑CAACAGAAA‑ATGCTGGGTGGGCTGGCG‑AAGAAGGCGG‑GAGCCGCGCAG‑TAATTTGGCCTTAGCCCGATATAGTA‑TGCGTAGGCCGGGTAAGGCGGTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTCCAGGGGGACCGTATCCGGGCAACCCTACTCACATCAAAAACGAAAATTAACCTTc > 1:60849/1‑251 (MQ=255) tCTGGTGATGAGCAATGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCAGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCg < 1:468806/250‑1 (MQ=255) gTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTtctc < 1:483724/251‑1 (MQ=255) gttgaGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACAACAACAACGAAAAGTACCCTTCGTTCTCCg < 1:432706/249‑1 (MQ=255) gatgaGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCg < 1:323947/251‑1 (MQ=255) atgaGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGc < 1:497564/251‑1 (MQ=255) ggtttggttggtaTC‑CATC‑GAAATCTGCTGGCTGGGCTGGCT‑AAGAAGGCGA‑AAGCCGCGCAG‑TAATTCGTCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGTGTTGACGCCGCATCCGGC‑ATTTGCG‑CATAGTGCCTGATGCGACGCTTG‑ATTCGTCTTACCAGGCCTACAGGCGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAg < 2:265137/239‑1 (MQ=255) ttt‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGGG‑AAGAAGGCGG‑AAGCCGCGCAG‑GAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGAt < 2:384239/250‑1 (MQ=255) ggtggGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTg > 2:263909/1‑251 (MQ=255) ggggATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGa < 1:238986/250‑1 (MQ=255) gATC‑CATGAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCTG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATAGAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGaaaa < 2:277062/251‑1 (MQ=255) aTC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAAt > 1:73459/1‑251 (MQ=255) | AGCCGCGCTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTG‑AAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGG‑TTTT‑GGTGGGATC‑CATCAGAAA‑CTGCTGGATGGGCTGGCG‑AAGAAGGCGG‑AAGCCGCGCAG‑TAATTCGGCCTTAGCCAGATATAGTA‑TGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑ATTTGAG‑CATAGTGCCTGATGCGACGCTTG‑ATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAAT > NC_000913/4456860‑4457355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |