New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 696741	27 (0.550)	4 (0.120)	4/338	2.9	15.8%	intergenic (‑1/+15)	metU/glnW	tRNA‑Met/tRNA‑Gln
	?	NC_000913	697135 =	24 (0.720)					intergenic (‑2/+378)	metT/asnB	tRNA‑Met/asparagine synthetase B
Rejected: Frequency below/above cutoff threshold.

GGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGC  >  NC_000913/696508‑696975                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                            gggTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGAt                                                                                                                                                                                                                             <  1:27388/249‑1 (MQ=255)                             aTAAAGTGGCTGGGGTACGAGGATTCGAAACTCTGAATGCCGGAATCAGAATCCGGTGCCGTACCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATAGTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGaa                                                                                                                                                                                               <  2:411598/251‑1 (MQ=255)                                     gcaggggtacGAGGATTCGAACCGCGGACTGGCGGAAGCAGAATCCGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTGTTGAATGTGCCGAACATATTCGATACATTCAAAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAtcttttttttcgcgataccttatcggcgttgcggggcgcattatgcgtataga                                                                                                                                                                                        <  2:329249‑M1/248‑54 (MQ=255)                                     gCTGGGGTACGAGGATTCGAAACTCGGAATGCCGGAATCAGAATCCGGTGCCTTCCCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTa                                                                                                                                                                                       <  2:402237/251‑1 (MQ=255)                                        ggggTACGAGGATTCGAACATCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGCCGGGATTCGAAACTGTGACCCCATCATTATGAGTGATGTGCTCTACCCAACTGAGCAACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGAATc                                                                                                                                                                                     >  1:314142/1‑250 (MQ=255)                                             aCGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAtcttttttttcccgataccttatcggcgttgcggggtgcatgatgcgtatggagccatgcc                                                                                                                                                                                >  2:106018‑M1/1‑190 (MQ=255)                                                                   ggcggtaTCAGAATCCGGTGCTTTACTGCACGGCGATAC‑CCCAACCAATTGGTCTTGAATTTGCCGCACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGAt                                                                                                                                                         <  2:112513/245‑1 (MQ=38)                                                                            aGAATCGGGTGCCGTATCGATTGGCTATACTCCCAA‑AAATGTGTTGTGAAGTTTCCGAACGTACACGGTACATTCAGTATTGGGTGTCTACATCGGGATTAGATCCTTTGACCGCATCATTCTGAGCGATGAGCTCGAAGCATCCGAGTTACGTAGCCAGATTGTTACT‑ACAATGGCTGGGGTACCTGGATTCGAACCTGGGAATGCCGGTATCAAAAGCCGGTGCCTTACCGCTTGGCGATACCCCAAt                                                                                                                                                 <  2:180614/250‑1 (MQ=255)                                                                             gAATCCGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATaa                                                                                                                                               <  1:427941/251‑1 (MQ=255)                                                                               attcGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTTGTGAATTTGCCGAACAGATGCGATACATTCAGAACTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTAGGAGAGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATTCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAAcc                                                                                                                                             <  1:247918/248‑1 (MQ=38)                                                                                                    cGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGACTGGGGTACCTGGGTTCGAACCAGGGTATGCCGGTATCAAAACCCGGTGCCTTACCGCTTGGCGATACCCCATTAACCgtccgttgtccagcttaatct                                                                                                                        >  1:465938/1‑231 (MQ=37)                                                                                                       tAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGCTTCGAACCTGTGACCCCATCATTCTGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTTTTTCT‑TCGGTGACCTGGGTGCCTGGATTCGGACCAGTATATGCCGGGATCAAAAACCGGTGCATTACCGCTTGAAGATACACCAATAGCCGGGCAGTgcttggcttagttgagg                                                                                                                     >  1:188469/1‑235 (MQ=21)                                                                                                               acaaATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATgg                                                                                                              <  1:371765/251‑1 (MQ=255)                                                                                                                            gAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTTT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGGATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGTACCGCTTACTCGAGGAAAATGGCGGGGGTACCTgg                                                                                                 >  1:296371/1‑251 (MQ=255)                                                                                                                            aaacttGCCGAATATATTCGGGACATTCAGAATTTTGTCGCTAAGACGGGATGCGAACCTGTGGCCCCATCATGATGAGTGATGTGCACTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑ACGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAATCCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTg                                                                                                  <  2:400869/246‑1 (MQ=37)                                                                                                                                 ggCCGACCATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCTCAGCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGTAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAAGAACCGGTCGGTGAACCGCTTTCTCGAAGAAGATGGCTGGGGTACCTGGATTc                                                                                             <  1:297881/249‑1 (MQ=38)                                                                                                                                  tccgatccgcttcgctacaatcACAATGTGGTGGCGACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAtctttttgttctcgataccttatcggcgttgcggggcgcattatgcgtatagagccttgcagcgtcaacctctttttcaaggaaaattgctcgaaattgactgtttggtgaggttgcgaacagcgtggcgctatagtcgtcaat                                                                                             <  2:188469‑M1/240‑145 (MQ=255)                                                                                                                                  gCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGCGCCTTACCGCTTGGCGATACCCCAATACCCGAACGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCg                                                                                            >  1:160756/1‑250 (MQ=255)                                                                                                                                   ccGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATAGCTTGAGTACCAGGATTCGAACCAGGGAATGCCGGGATCAAAAACCGGTGCATTACCGCTTGGCGATACCCCAATAACCGGACGGTGAACGGCTTACTGGAAGAAGATGGCTGGGGTACCTGGATTCGa                                                                                           >  1:452824/1‑250 (MQ=38)                                                                                                                                          tatTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCCATGGCTGGGGCACCTGGATTCGAACCAGGGAATGCCGGGATCAAAAACCGGTGCATCACCGTTTGACGATACCCCAATAACAGGGCGGTGATCCGCTTACTCGATAAAGATGGCGGGGGTACCTGGAttataattaggg                                                                                    >  1:421771/1‑240 (MQ=25)                                                                                                                                                  cgctaaaaaatttggtggCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAtcttttttttcgcgataccttatcggcgttgcggggcgcattatgcgtatagagccttgcagcgtcaacctctttttcaaggaaaattgctcgaaagtgactgtttggttaggttgcgaacagcgtggcgctatattcgtcaattattgtttactttgtgt                                                                            <  1:106018‑M1/243‑162 (MQ=255)                                                                                                                                                    aTTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGCTTGTTTCT‑TCGATGGCTTGGGTACCTGGATTCGAAGCAGGGAATGCCGGTATCAAAACCCGGTGCCTTACCGCTTGGAGATACCCCAATAACCGCGCGGCGCACCGCTTACTCGAAGAAGATGTCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTAt                                                                         >  1:455052/1‑251 (MQ=38)                                                                                                                                                        aGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGCGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGCACCTGGCTTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGCACCGCTTACTCGAAGAAGATGGCAGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCaa                                                                      >  1:336641/1‑250 (MQ=255)                                                                                                                                                             ttGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAAt                                                                                                                                                                                              <  2:139076/125‑1 (MQ=255)                                                                                                                                                             ttGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAAt                                                                                                                                                                                              >  1:139076/1‑125 (MQ=255)                                                                                                                                                                  ggCTACGACGGGATTCGAACCTGTGACACCATCATTATGAGTGATGTGCTCTAACCAACCGAGCTACGTATCCAGATTGTGTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGcc                                                           <  1:152467/251‑1 (MQ=255)                                                                                                                                                                              aTTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGTCTGGGGTACCAGGATTCGTACCAGGGGATGCCGGTATCAAAAACCGGTGCCTTAACGCTTGGCGATACCCCAATCACCGAGCGGTGAACCGATTACTCGAAGAAGACGGCTGGGGGACCTGGATTCGAACCAGGGAATGCCGGTATCAAACACCGGTGCCTTACCGCTTGGc                                               >  1:77581/1‑251 (MQ=38)                                                                                                                                                                                         tgACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGAATCAAACACCGGTGCCTTACCGCTTGGCGATACCCCATc                                    >  1:377737/1‑251 (MQ=255)                                                                                                                                                                                                      aTGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGCAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACACCGCttt                       >  1:184372/1‑251 (MQ=255)                                                                                                                                                                                                               gtgCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAAt              >  1:99305/1‑251 (MQ=255)                                                                                                                                                                                                                           acttagttccgtcgataGATTGTTTCTATC‑ATCGCTGGGGTTCCTAGATTCGAACCCGGGAAGGCCTGTATCAAAACCCGCTGTCTTTCCGCTTGGCGATCCCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGc  <  1:382413/235‑1 (MQ=25)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                            GGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATAC‑CCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCT‑TCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGC  >  NC_000913/696508‑696975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.