mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,196,849 | 0 | G | T | 53.1% | 0.9 / 65.5 | 49 | intergenic (‑41/‑54) | rsd/nudC | regulator of sigma D/RNA decapping hydrolase |
| * | NC_000913 | 29,482 | 0 | G | C | 52.9% | ‑0.6 / 16.2 | 17 | intergenic (+287/‑169) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl‑phosphate synthetase small subunit |
| * | NC_000913 | 4,209,791 | 0 | G | A | 43.4% | 35.6 / 95.3 | 83 | noncoding (18/76 nt) | gltV | tRNA‑Glu |
| * | NC_000913 | 4,521,406 | 0 | A | T | 35.3% | 51.3 / 12.1 | 34 | F205L (TTT→TTA) | yjhF | putative transporter YjhF |
| * | NC_000913 | 3,943,634 | 0 | A | G | 33.3% | 30.9 / 31.1 | 39 | intergenic (+124/‑70) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 73,346 | 0 | T | A | 26.9% | 97.5 / 13.6 | 53 | L392F (TTA→TTT) | thiP | thiamine ABC transporter membrane subunit |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3823093 | 52 (1.270) | 3 (0.070) | 3/484 | 3.1 | 4.4% | coding (694/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| ? | NC_000913 | 3823465 = | 78 (1.930) | coding (1066/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase SpoT | |||||