| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 73,346 | 0 | T | A | 26.9% | 97.5 / 13.6 | 53 | L392F (TTA→TTT) | thiP | thiamine ABC transporter membrane subunit |
| Reads supporting (aligned to +/- strand): ref base T (32/6); new base A (0/14); total (33/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.19e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCAATCGACAGCACGCATGCAAAGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCACCGGTTGTGCCAGCACTTCCGGCAACTGGCGATTTACCCCATCGACG > NC_000913/73098‑73592 | ccAATCGACAGCACGCATGCAAAGGCCCGCGCCTGCGCCAGTGGGCGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTaa < 2:119245/251‑1 (MQ=255)ccAATCGACAGCACGCATGCAAAGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTa > 1:233857/1‑250 (MQ=255) aGCACGCATGCAAAGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGcc < 1:417746/251‑1 (MQ=255) aTGCAAAGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGCTTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAGGAAGCCGGGAGcc > 1:182875/1‑251 (MQ=255) aaaGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCACTCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGCTTGTGGCAGGCCGACA‑GCGTT‑GTTGAGCAGTAAAAAAAAGCCGGTCGcccgcc > 2:85539/1‑247 (MQ=255) aaaGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCCTCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGGTAAGTGT‑‑GTTGAGCAGTAAAAAGAAGCCGGTAgaccgc > 2:319417/1‑245 (MQ=255) gccagcgaaCGTTTCAGGGCGCGCCGCTCCACCACCTTTAAGCGTGAACAGCCTTAAATCCACAGCGCCTGACATAACATGATGTAGCGGGCGGTGATACAGCGCATCGGGTTTTCCAGCCCTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGGGAAAATCACACTGCAGTCA‑GCAGATTGTGGCCGGACGGTC‑GTGGT‑GTTGAGCAGTAAAACGAAGCCGGTAGCCAGCACAATACCCGGCagggg > 2:437631/9‑247 (MQ=255) ggcAGCCCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACTAGCTTTAGCGGGCGGTTATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGAATAAGGGAACGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCTCTCAt < 2:242154/250‑1 (MQ=255) gCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACCATGCCGTCA‑GCAGATTGTGGCAGACCGATC‑GTGTT‑GTTGAGCAGTCAAAAGAAGCCGGTAGCCAGGACAATCCCCGGCCAGGG‑GAGGATCAACATGCCGCTCaacccc > 2:438617/1‑246 (MQ=255) cTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTcc > 1:321631/1‑250 (MQ=255) tCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTcc > 1:404274/1‑249 (MQ=255) ttAAGCGAGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGAccc > 1:42196/1‑251 (MQ=255) aaGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGGGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGTATCAACATGCCGCTCATCTCCAGCACCTGACCCg < 1:397327/250‑1 (MQ=255) cGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAg < 1:403278/251‑1 (MQ=255) cAGCCTTCAACCCCCAGAGTATGACATAACATGCTGTAGCGGGCGGTGAAATCGCGCATCGGGTTTCCCAGCA‑TTTCAAGCGCATAAGGAATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCGGAGTGTGGCGGGCCGATA‑TTGTT‑GTTGAGCAGAAAAAAGAAGCGGGTAGCCAGCAAAACCCCCGGCATGGC‑GAGGATCACCAGGCCGCTCATCTCCAGCACCTATCCCGCCAGCAtttt < 1:320762/251‑1 (MQ=255) cTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGACGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGc > 1:20195/1‑251 (MQ=255) cAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCCAATCTCCAGCACCTGACCCGCCAGCAtttttggccgc > 2:99154/1‑244 (MQ=255) aTCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCgcgc > 1:166796/1‑251 (MQ=255) cGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCCCTTTCA‑GCGCATCAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGGTA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGc > 1:17604/1‑200 (MQ=255) aCTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCGTTTTCTGCCGCGCCCGCAGTTcg > 1:336937/1‑251 (MQ=255) aTGCTGTAGGGGGCGGTGATATCGCGCATCGGGTTTCCCAGCACTTTCA‑GCGCATAAGGGACCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGAAAAAAGAAGCCGGTAGCCAGCACAACCCCCGGCAGGGC‑GGGGATCAACATGCCGCTCATCTCCAGCCCCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCa < 1:207669/251‑1 (MQ=255) aTGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GGGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCAAGGC‑GAGGAACAACATGCCGCACATCTCCAGCACCCGACCCGCCAGCATTTTCTTGCGCGCCCGCAGTGCCAGACTGCTccc > 2:661/1‑250 (MQ=255) tGTAGCGGGCGGTGAGATCGGGCATCGGGTTTTCCATCATTTTCA‑GGGCAAAAGGGATCGCCTTTAACGCTTTGGGGAAAATCACAAGGCCGTCA‑GCAGATGGTGGCGGGCCTATA‑GGTTT‑GTGGAGCAGTAAAAAGACGCCGGTAGCCAGCACAACCCCCGGCGTGGC‑GAGGATAAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATag < 1:428677/250‑1 (MQ=255) gggcggTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCCTTGGTGAAAATCACACTGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGGAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCCGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCCGcatc > 2:256450/1‑251 (MQ=255) gcggTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCCTAGCAGcatcat > 1:229213/1‑251 (MQ=255) gTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGt > 1:88597/1‑251 (MQ=255) gATATCGCGCGTAGGGTTTTCCAGCTCTTTCA‑GCGCATAAGGGATCGCAATTAACGCATTGGAGAAAATCACCATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GGGTT‑GTTGAGAAGTAAAAAGTAGCCGGTAGCCCGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCGCCTCTCCAGCACCTGACCCGCCAGCATTCTCTGCCGCGCCCGCCGTTCGCGCATGCTccctaaccacatcctggac > 2:193784/1‑233 (MQ=255) atatCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTc > 1:89719/1‑249 (MQ=255) cgcATGGGTTTTTCCAGCACTTCCA‑GCGCATAAGGGATCGCTATAACCGCTTTGGTGAAAATCCCAATGCCGTCA‑GAAGATTGTGGCAGGCGGATA‑GTGTT‑GTGGAGCAGAAAAAAGAATCCGGTAGCCAGCACAACCCCCGGCATGGC‑GAGGATCAACATGCGGCTCACCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTAc < 1:29296/251‑1 (MQ=255) cgcATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GGGTT‑GTTGAGCAGTAAAAAGAAGCCGGCAGCCAGCACAATCCCCGGCATGGC‑GCGGATCAAAATGCCGCTCATCCCCACCACCTGACCCGCCCGCATTTTCTGCCGCGCCCGCAGTTCCCGACTGCCCCCTAGACGCAACATGGTCAGCCCTAc > 2:324671/1‑251 (MQ=255) cccatcgctttttCCTGCTCTTACA‑GCGCAAAAGGGAACGACATTATCGTATCGGGGAAAATCACAATGCCGTCA‑GAAATTTGGGGCGGGCTGA‑A‑GTTTTTGTGAAGCAGAAAAAAAACCCCGGTAGCCAGCACATCCCCCGCCATGGC‑GAGGATCACCATGCCCCTCCTCCCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATAGTCAGCACTAc < 1:327286/242‑1 (MQ=255) aGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATC‑GTGTT‑GTTGAGCAGTAAAACGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCCGCACTACGCACAATACACCTgc > 2:196162/1‑251 (MQ=255) cattttCA‑GCCCATAAGGGATCTCAATGAACGCTTGGGTAAAAATCACAA‑GCCCTCAAGCAGATTGGGGCAGCCCGATG‑GTGGT‑GTTGAGAAGAAAAAAGAAGCCGTTAGCCAGCACACCCCCCGCAATGGC‑GAGGATCAACATGCCCCCCACCTCCACCACCGGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTgccg < 1:239835/248‑1 (MQ=255) aGGGATCGCCATTAACGCATTGGTGCAAATCACAATGACGTCA‑GCAGATTGTGGCAGGCCGATA‑GAGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACCTGCCGCTCATCTCCAGAACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACCACGCACCATACCCCTGACGCCCGCGCAATACGc > 2:402486/1‑250 (MQ=255) gggttCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGGGGCAGGCCGATA‑GTGTT‑GTTGAGCAGAAAAAAGAAGCCGGTAGCCAGCACAACCCCCGGCTGGGC‑GAGGATCAACATGCCGCTCATCCCCAGCCCCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCaa < 1:209927/247‑1 (MQ=255) gATCGCCATTAACGCATTGGTGAAAATCACACTGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCCCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACg > 1:391442/1‑251 (MQ=255) cGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCCGCACAATCACAGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGACGCGCCCGCAGGTAGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACAACTGCCGCCAGCGCAATACGAAACGAgg > 1:255616/1‑251 (MQ=255) tAACGCATTGGTGAAAATCACAATGCCGTAA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCCGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCACATATCCAGCACCTGCCCCCCCAGCATTTTATGCCGCGCCCGCAGTTCGCGACTGCTCCATCGCAGCCTCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCCATACGCCACGAGGACcac > 2:419846/1‑250 (MQ=255) gattgggtaaaattCACAATGCCGTCA‑GCGGATTGTGGCAGGCGGATA‑GTGTT‑GTGGAGAAGAAAAAAGAAGCCGGTAGCCAGCACAACCCCGGGCAGGGC‑GTGGATCAACAGGCCGCTCATCCCCAGCCCCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACATTACACCTTCCGTCAGCGCAATACGCAACGAGGTCCACAgcgc < 1:415728/238‑1 (MQ=255) cATTGGTGAGAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATC‑GTGTT‑GTTCAAAAGTAAAAAGAAGCCGGTAGCCAGCCCAATCCCCGGCATGGC‑GCGGATCAACATGCCCCCCATCTCCAGCAACTGCCCCGCCAGCATTTTCTGCCGACCCCGCCGTTCGAGACCGCTCCATAGCAGCATCATGGGCAGCACCACGCACCATACACCTGCCGCCCGCGCCAAACGCAACGGGGTCCACAgaccc > 2:178952/1‑247 (MQ=255) aTTGGTGAAAATCACACTGCCTTCA‑GCAGTTGGGGGAAGGCCGAGT‑GTGTT‑GTGGAGCAGAAAAAGGAAGCCGGTAGCCAGCACAACCCCCGGCGTGGC‑GGGGAACAACTGGCCGCTCATCCCCAGCCCCTGCCCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCt < 2:226890/251‑1 (MQ=255) tGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGTTC‑GTGTT‑GTTGCGCAGTAACAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCACTTTCTGCCGCGCCCGCAGGTCGCGACTGCTCCATAGCAGCATCATGGTCAGCAATACGCACAATACACCTGCCGCCAGCGCAATACGAAACGAGGTACACAGAGCCTGCcac > 1:156693/1‑251 (MQ=255) aaaaacccaaaTGCCGCCA‑GAAGTTTGGGGCAGCCCGTTT‑GTTTT‑TTTGATCAGAAAAAAAAACCCGGTACCCAGCACAA‑CCCCCGCCTGGCCGAGGACCAACATCCCGCTCCCCCCCAGCCCCTGCCCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCcaca < 1:256450/242‑1 (MQ=255) accccaATGCCGTCG‑GCAGTTTGTGGCAGGCCTATG‑GTGTT‑TTGGACCAAAAAAAAGAGGCCGTTAGCCAGCACAACCCCCGTCATGGC‑GGGGATCAACATGCCGCTCATCTCCAGCCCCTTCCCCGCCAGCATTTTCTGCCGCGCCCGCATTTCGCGACTGCTCCATATCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCAc < 1:429405/247‑1 (MQ=255) aaggccgccA‑GCAGATGGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGAAAAAAAAAGCCGGTAGCCAGCACAACCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCCCCAGCCCCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAAt < 1:340136/190‑1 (MQ=255) aaTGCCGTCA‑GCAGATTGTGGCAGGCCGCTA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCCACTGCTCCATAGCAGCATCATGGTCAGCACTACGCCCACTACACCAGCCGCCCGCGCCATACCCCACGCAGTCCACAGCGCCCGCCACAGCACCGGtt > 2:71005/1‑251 (MQ=255) aaTGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGAACCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAAt > 2:340136/1‑193 (MQ=255) ggCCGTCC‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGAAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGCC‑GAGGATCAACATCCCGCTCACCTCCAGCCCCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCACCGGTtgt < 1:302903/250‑1 (MQ=255) cccGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGAAAAAAGAAGCCGGTACCCAGCACAACCCCCGGCATGGC‑GAGGATCAACATGCCCCTCATCTCCAGCCCCGGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCACCGGTtgtg < 1:138285/250‑1 (MQ=255) aTTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCACCGGTTGTGc > 1:300773/1‑241 (MQ=255) gggCAGGCCGATA‑GTGTT‑GTTGAGCAGAAAAAAGAAGCCGGTACCCACCACAACCCCCGGCAGGGC‑GAGGATCAACATGCCCCTCATCCCCAGCCCCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCACCGGTTGTGCCAGCACTTCCGGCa < 1:296692/250‑1 (MQ=255) aGGCCGATA‑GTGTT‑GTTGAGAAGTAAAAAGAAGCCGGTAGCCAGCACAATCACCGGCATGGC‑GAGGATCAAAATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATCCGCAACGCGGTCCACAGCGCCGGCCACAGCACCGGTTGTGCCAGCACTTCCGGCAACTg > 2:154065/1‑251 (MQ=255) cAGTAAAAAGAAGCCGGTAGCCAGCACAATCACAGCCATGGC‑GAGGATCACCATGCCGCTCATCTACAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCACCGGTTGTGCCAGCCCTTCCGGCAACTGGCGATTTACCCCATcgacg > 1:182113/1‑250 (MQ=255) | CCAATCGACAGCACGCATGCAAAGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCA‑GCGCATAAGGGATCGCCATTAACGCATTGGTGAAAATCACAATGCCGTCA‑GCAGATTGTGGCAGGCCGATA‑GTGTT‑GTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGC‑GAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCACAGCGCCTGCCACAGCACCGGTTGTGCCAGCACTTCCGGCAACTGGCGATTTACCCCATCGACG > NC_000913/73098‑73592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |