Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,196,8490GT53.1% 0.9 / 65.5 49intergenic (‑41/‑54)rsd/nudCregulator of sigma D/RNA decapping hydrolase
Reads supporting (aligned to +/- strand):  ref base G (9/14);  new base T (13/13);  total (22/27)
Fisher's exact test for biased strand distribution p-value = 5.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.16e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GTCCGGCAGACAAGTAATCGACCAGGCTCTGACAAAAATCATCAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGTCACGATATGGG  >  NC_000913/4196604‑4197099
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                          
gTCCGGCAGACAAGTAATCGACCAGGCTCTGACAAAAATCATCAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCACGTTTGTATTCAAAAACTGCTCAGTGATAAATg                                                                                                                                                                                                                                                       >  1:266932/1‑251 (MQ=255)
        gACAAGTAATCGACCAGGCTCTGACAAAAATCATCAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAAcc                                                                                                                                                                                                                                               >  1:236368/1‑251 (MQ=255)
                   gACCAGGCTCTGTCAAAAAACATCAAGGGCATTTGCGTTTAGCCTCTTGTGCGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTATTAAGCCACGAGCAGATGCTTACTTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCAGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTCTTCAAAAACTGCTCAGTGATAAATGTAAAAACCATTTTAAACag                                                                                                                                                                                                                                    <  2:142719/251‑2 (MQ=255)
                    aCCAGGCTCTGACAAAAATCATCAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATg                                                                                                                                                                                                                                   <  2:226096/251‑1 (MQ=255)
                             tGACAAAAATCATCAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATg                                                                                                                                                                                                                          >  1:357876/1‑251 (MQ=255)
                              gACAAAAATCATCAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGc                                                                                                                                                                                                                         >  2:321343/1‑251 (MQ=255)
                                cAAAAATCATCAAGGGCTTTTTCGTTTAACCGCATGTACGATTCTTTGCCAGGCTTAATGCAAACCAGATTGTAAGAAGCAACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACATCCTCTGACGCGCTACGTCAGGTTGACGAGCTGGTTAAGCGTGATTGACTCAGCAAGTTTGTATTCAAAAACTGCTCGGTGAGAAATGTAAAAACCATGTTAAACATGCCATTGATGCa                                                                                                                                                                                                                        >  2:328755/1‑250 (MQ=255)
                                     atcatcAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGAGGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACGTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTa                                                                                                                                                                                                                  <  1:67707/251‑1 (MQ=255)
                                               gCTTTTTCAATTAGCCTCATGTACGACTCTTTGACAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTAAGTACATGTAGCCAGCGATCAACCAGTTAGTTACTTCCTCTGACGAGCTCCGCCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGCTGCAAAGGTAGAGCAAGAGc                                                                                                                                                                                                        >  2:200580/1‑251 (MQ=255)
                                                cTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCTGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCt                                                                                                                                                                                                       >  2:376622/1‑251 (MQ=255)
                                                   tttCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCATATGCTTACGTCCATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGCCGCGCTCCGTCAGTTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTAt                                                                                                                                                                                                     <  2:236368/250‑1 (MQ=255)
                                                                   gTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGaaa                                                                                                                                                                                    <  1:248088/251‑1 (MQ=255)
                                                                         ttCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAAtt                                                                                                                                                                                >  2:107387/1‑249 (MQ=255)
                                                                                  aGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCt                                                                                                                                                                     >  1:226345/1‑251 (MQ=255)
                                                                                       tAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATAAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGAGCGTATAATTGAAAAATTAGATCACGGCtggt                                                                                                                                                                  <  1:430928/249‑1 (MQ=255)
                                                                                           gCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGgtcg                                                                                                                                                            <  2:340581/251‑1 (MQ=255)
                                                                                           gCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGgtcg                                                                                                                                                            <  1:153955/251‑1 (MQ=255)
                                                                                                           taAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCACAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGCTCACGGCTGGTGGGTCGTCAGCCATGAACaaa                                                                                                                                             >  2:167355/1‑250 (MQ=255)
                                                                                                                cACGAGCAGATGCTTACGTACATGTAGCCATCGATCAACCAGTGTGTTACTTCCGCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACAGGCCAGTGATGCAAAGGTAGTGCAAGAGTTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTAt                                                                                                                                       <  1:25712/251‑1 (MQ=255)
                                                                                                                cACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTAt                                                                                                                                       >  1:295109/1‑251 (MQ=255)
                                                                                                                cACGAGCAGATGCGTACGTACATGTAGCCAGCTATCATCCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTAt                                                                                                                                       <  2:327360/251‑1 (MQ=255)
                                                                                                                         aTGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGGTCGtat                                                                                                                                                                                            <  1:123652/189‑1 (MQ=255)
                                                                                                                         aTGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGtat                                                                                                                                                                                            >  2:123652/1‑189 (MQ=255)
                                                                                                                         aTGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCg                                                                                                                               >  1:177643/1‑250 (MQ=255)
                                                                                                                                    cATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTg                                                                                                                   >  1:307491/1‑251 (MQ=255)
                                                                                                                                    cATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTg                                                                                                                   >  1:222836/1‑251 (MQ=255)
                                                                                                                                        tAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCat                                                                                                               >  1:349840/1‑251 (MQ=255)
                                                                                                                                          gCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCatat                                                                                                             >  1:26471/1‑251 (MQ=255)
                                                                                                                                             cgCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCAGGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTATTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGGCAGTCATGAACAAAAATTATGGTTGCCGAAGGGAGAAGGGCCATATGGc                                                                                                          <  2:179006/250‑1 (MQ=255)
                                                                                                                                                 aTCAACTAGTTTTTTGCTTCCTCTTACGCGCTTCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTTATAAATGTAAAAACCATTTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAAGTAGATCACGGCTGGTGGGTCGTCAGCCAGGAACAAAAATTATGGTTGCCGAAGGGAGAATGGCCATATGGCGAAg                                                                                                      <  2:34776/251‑1 (MQ=255)
                                                                                                                                                             gTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCg                                                                                          <  2:26471/251‑1 (MQ=255)
                                                                                                                                                             gTTACTTCCTCTGACGCGCTCCGGCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCGCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCg                                                                                          <  2:116412/251‑1 (MQ=255)
                                                                                                                                                                        ggACGCGCGCCGGCAGGTTATCGTGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCGCGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGTAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGt                                                                               <  2:266932/250‑1 (MQ=255)
                                                                                                                                                                                       ggTTATTGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTa                                                                                                                                                                               >  1:120371/1‑140 (MQ=255)
                                                                                                                                                                                       ggTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTa                                                                                                                                                                               <  2:120371/140‑1 (MQ=255)
                                                                                                                                                                                            tCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCgg                                                           >  1:328715/1‑251 (MQ=255)
                                                                                                                                                                                              gAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGGGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCTAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTTGGTCAGCGCGCACTACAAATCGGCg                                                         <  2:401451/251‑1 (MQ=255)
                                                                                                                                                                                                    gTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGGCGTAAGACATGAACAAAAATTATGGATGCCGAAGGGAGAATTGCCATATGGAGAAGCGGCAAATTTCGATCTTGGGGGTCAGCGGGCACACCAAATAGGCGAATgg                                                    >  1:15640/1‑250 (MQ=255)
                                                                                                                                                                                                    gTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGc                                                   >  1:142483/1‑251 (MQ=255)
                                                                                                                                                                                                    gTTAAGCATGATTGACTCCGCAAGTGTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGc                                                   <  2:219534/251‑1 (MQ=255)
                                                                                                                                                                                                      tAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATTTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATTAACAAAAATTATGGTTGCCGAAGGGAGAATAGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                                  <  1:391320/250‑1 (MQ=255)
                                                                                                                                                                                                        aGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                               <  2:307491/251‑1 (MQ=255)
                                                                                                                                                                                                                 gACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGTTGAAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGt                                      <  2:325335/251‑1 (MQ=255)
                                                                                                                                                                                                                     ccGCAAGTTTGTATTCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTg                                   <  1:430333/250‑1 (MQ=255)
                                                                                                                                                                                                                                 aTTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcag                      <  1:67290/251‑1 (MQ=255)
                                                                                                                                                                                                                                  ttCAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagc                     >  1:70354/1‑251 (MQ=255)
                                                                                                                                                                                                                                    cAAAAACTGCTCAGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagcag                   <  1:321343/251‑1 (MQ=255)
                                                                                                                                                                                                                                               aaGTGATAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGTCAc          <  2:328715/248‑1 (MQ=255)
                                                                                                                                                                                                                                                aGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGTCACGat       <  2:142483/251‑1 (MQ=255)
                                                                                                                                                                                                                                                     gaAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGTCACGATATggg  <  1:107387/251‑1 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                          
GTCCGGCAGACAAGTAATCGACCAGGCTCTGACAAAAATCATCAAGGGCTTTTTCGTTTAGCCTCATGTACGATTCTTTGCCAGGCTTAATGCCAACCAGATTGTAGTAAGCCACGAGCAGATGCTTACGTACATGTAGCCAGCGATCAACCAGTTTGTTACTTCCTCTGACGCGCTCCGTCAGGTTATCGAGCTGGTTAAGCATGATTGACTCCGCAAGTTTGTATTCAAAAACTGCTCAGTGAGAAATGTAAAAACCATGTTAAACATGCCAGTGATGCAAAGGTAGTGCAAGAGCTATGGATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGTCACGATATGGG  >  NC_000913/4196604‑4197099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑