breseq  version 0.39.0   mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,825,056	0	G	A	38.5%	26.5 / 13.1	26	intergenic (‑119/+84)	ves/spy	HutD family protein Ves/ATP‑independent periplasmic chaperone
*	NC_000913	2,624,514	0	A	T	38.5%	28.3 / 12.6	26	I491F (ATT→TTT)	ppk	polyphosphate kinase
*	NC_000913	1,825,061	0	G	A	37.0%	30.8 / 12.2	27	intergenic (‑124/+79)	ves/spy	HutD family protein Ves/ATP‑independent periplasmic chaperone
*	NC_000913	4,604,350	0	C	T	34.3%	45.2 / 14.7	35	S64F (TCT→TTT)	bglJ	DNA‑binding transcriptional regulator BglJ
*	NC_000913	4,604,344	0	C	T	32.4%	50.5 / 12.4	35	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional regulator BglJ
*	NC_000913	119,384	0	T	G	29.2%	73.3 / 10.0	51	V35G (GTG→GGG)	ampE	protein AmpE
*	NC_000913	119,396	0	C	T	26.5%	80.2 / 10.7	51	S39F (TCT→TTT)	ampE	protein AmpE
*	NC_000913	3,875,532	0	A	T	22.7%	84.0 / 10.9	45	H32L (CAT→CTT)	yidX	putative lipoprotein YidX
*	NC_000913	3,595,044	0	T	A	22.2%	99.8 / 10.6	55	Y146F (TAC→TTC)	livM	branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3938983 =	44 (1.030)	4 (0.090)	4/492	2.1	8.3%	coding (757/993 nt)	rbsR	DNA‑binding transcriptional dual regulator RbsR
	?	NC_000913	4498181 =	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region