mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,556,207 | 0 | T | C | 29.5% | 77.3 / 12.2 | 44 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 3,595,044 | 0 | T | A | 25.0% | 103.8 / 14.9 | 54 | Y146F (TAC→TTC) | livM | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| * | NC_000913 | 4,223,644 | 0 | C | T | 24.5% | 102.7 / 14.8 | 49 | intergenic (‑16/‑184) | iclR/metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| * | NC_000913 | 3,813,272 | 0 | C | T | 24.4% | 68.9 / 10.3 | 46 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 696741 | 20 (0.480) | 3 (0.110) | 3/330 | 2.4 | 12.6% | intergenic (‑1/+15) | metU/glnW | tRNA‑Met/tRNA‑Gln |
| ? | NC_000913 | 697135 = | 28 (0.980) | intergenic (‑2/+378) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||