| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,595,044 | 0 | T | A | 25.0% | 103.8 / 14.9 | 54 | Y146F (TAC→TTC) | livM | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| Reads supporting (aligned to +/- strand): ref base T (36/3); new base A (1/12); total (39/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.67e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGGGATCTGACTGATTCCGTTCGGGCCGCCGGTAATTTCGGTGTTATTGAGCAGCAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCT > NC_000913/3594803‑3595284 | cGGGATCTGACTGATTCCGTTCGGGCCGCCGGTAATTTCGGTGTTATTGAGCAGCAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑ccgc > 1:201747/1‑251 (MQ=255)cGGGATCTGACTGATTCCGTTCGGGCCGCCGGTAATTTCGGTGTTATTGAGCAGCAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGGCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑ccgc > 2:112580/1‑251 (MQ=255) cctgattgaTTCCGTTCGGGCCGCCGGTAATTGCGTTGTTATTGAGCAGCAATATGCGCACAATTCCGCCGAAACCGAGGGTAACGATCGCCAGATAGCCACCGCGCAAACGCAGCACCGGAAACCC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAACCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTAc < 1:402996/250‑1 (MQ=255) ttCCGTTCGGGCCGCCGGTAATTTCGGTGTTATTGAGCAGCAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGGGGAAGCGCCGATGGCGGAAAAA‑CCGCCGTACCccagcacc > 2:206370/1‑251 (MQ=255) ttCGGGCCGCCGGTAATTTCGGTGTTATTGAGCAGCAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGCAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCCGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGGGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCccagcaccagccg > 2:101542/1‑249 (MQ=255) ccgccgGTAATTTCGGTGTTATTGAGCAGCAATATGCGCACAATTTCGGCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGACGCCC‑GCCGCCGCTGCCCTTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑CAGCGTAAGCGCCGATGGCGTAAAAA‑CAGCCGTACCCCAGCAACAGCAGAcc > 2:269533/1‑248 (MQ=255) agcagcAATATGCGCACAATTTCGCCGAAACCGCGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGccc > 1:249868/1‑251 (MQ=255) agcagcAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGGAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCCGAAAGACCAACAACC‑ACGTTCAGccc > 2:326109/1‑251 (MQ=255) agcagcAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGACC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGccc > 1:184258/1‑251 (MQ=255) gcaATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCg > 1:155794/1‑248 (MQ=255) caATATGCGCACAATTTCGCCGAAACCGCGGGTAACGATCGCCAGATAGTCCCCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCgagcc > 1:373639/1‑249 (MQ=255) gcgcACAATTTCGCCGAAACCGAAAGTAACGATCGCCAGATAGTCACCGCGCACACGCAGCACCGGAACACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCTGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGACAGACCAACAACA‑ACGGTCAGCCCGAGACCGAgg > 2:372777/1‑250 (MQ=255) gcACAATTTCGCCGAAACCGCGGGTAACGATCGCCAGATACTCCCCGCGCAAACGCAGCACCGGCAAAAC‑GAGCACGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GCAGCCCCAGCCGTAATAGTGCTTGCGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCCCCAGCAGACCAGAAAGACCAACAACC‑ACCTTCATccccagcccgctgct > 2:225667/1‑238 (MQ=255) cacaATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCCCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATa > 1:183718/1‑250 (MQ=255) aaTTTCGCCGAAACCGAGGGTAACGCTCGCCAGATAGTCACCGCGCAAACGCAGCACCGGACAACC‑GAGCAGGAAGCCC‑GCCACCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAACAGTGCTTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATg > 2:434813/1‑250 (MQ=255) cGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCCAACGCAGCACCGGAACAAC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGCGATTGAGCCGCGCAA‑AAGGGTAAGAGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCATACCAGCAAGACCA‑CAACCCACGTTCAGCCAGAGACAGCGCATAATGTAGATCATg > 2:389606/1‑251 (MQ=255) gAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATACTGTAGATCATGGTCAggg > 2:79785/1‑251 (MQ=255) gAGGGTAACGACCGCGAGATAGCCCCCGCGCAACCGCAGCCCCGAAAACCC‑GGGCAGGAGCCCC‑GCCGCCGCTGCCATAAACCCACAAACCGGCAGGCAGGCCCA‑GACCCCCAAGCCGTAATAGTGATTGGGCAGCGAAA‑AAGTGAAAGCGCCGATGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAggg < 1:377691/251‑1 (MQ=255) ggTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AGGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTgg > 2:153996/1‑251 (MQ=255) gTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCCCCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCCTTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGAcc > 1:22889/1‑221 (MQ=255) tAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGc > 1:291856/1‑250 (MQ=255) cgtccGCCAGATAGTCCCCGCACAACCCCA‑CCCCCGAAAACC‑GGGCCGGAACCCCCGCCGCCGCTGCCATTATTCCAGCATCCGGCAGGCAGGCCAA‑GAAGCCCAAGCCGTAATAGTGTTTGAGCGCCGCAA‑AAGTGGAAGCGCCTATGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAata < 1:372777/247‑1 (MQ=255) aTCGCCAGATAGTCACCGCGCAACCGCAGCACCGGAAAACA‑GAGCAGGAAGCCC‑GACGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GCAGCCCAAGCCGTAATAGCGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑ACGCCGTACCCCAGCACCAGCAGACCAGAAAGCCCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATc > 1:402372/1‑251 (MQ=255) aTCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGCAAGCCC‑GCCCCCGCTGCCATTCATCCAGCAATCGGCAGGCAGGACCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTCAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCACCAACC‑ACGTTCAGCCCGCGAACGAGGATAATGTAGATCATGGACCGGGTGGCAATATc > 2:442045/1‑251 (MQ=255) cACCGCGCAAAAGCAGCACCGGAAAACA‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAC‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAAAC‑ACGTTCAGCCCGAGCCCGAGGATAATGTAGCTCATGGTCAGGGTGGCAATCTCCACCGTCCCGCGt > 2:37884/1‑251 (MQ=255) caaaccgcgccccGGAAAACCCGGGCAGGAACCCC‑CCCGCCCCTGCCATAAACCCAGCAATCGGCGGGCGGGCCCA‑GAAGCCCAGGCCGTAATAGTGATTGAGCAGCGAAA‑AAGGGTAAGCGCCGATGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAAcc < 1:317408/240‑1 (MQ=255) agcaCCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACgg > 1:17632/1‑251 (MQ=255) gcaCCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGACATTAATCAAGCAATCGACAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCACGCGTGAAACCATAAACGgc > 1:357230/1‑251 (MQ=255) caCCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGAAAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGAGTGAAACCATAACCggac > 2:326279/1‑249 (MQ=255) ccccgccgcTCCCATAACCCCAGCAACGGGCAGGCAGGCCCA‑AAACCCCAAGCCGAAATATTGATTGAGCAGCGAAA‑AAGTGTAAGCCCCGATGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAgcg < 1:326109/249‑1 (MQ=255) gccgccgcTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAgcgc > 1:98229/1‑251 (MQ=255) cgccgcTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCCAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGAACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATcc > 1:265210/1‑196 (MQ=255) cgccgcTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAACAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGAAGATCATGGTCAGGGTGGCAATATCCACAGCCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCCACAGCGccc > 2:310222/1‑250 (MQ=255) cgccgcTGCCATTAATCCAGCAATCGGCAGGCAGGTCAA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGGGGCAATATCCACCGTCACGCGTGAAACAATAAACGGCCACGCCACCGCAAGCACCcacacagcc > 1:371253/1‑245 (MQ=255) ccATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAAc > 1:48557/1‑251 (MQ=255) tCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCt > 1:281102/1‑251 (MQ=255) cAGCAATGGGCTGGCAGGCCGA‑GAACCCCAAGCCTTAATGGTTATTGAGCAGCGCAA‑AGGGTTAAGCGCCGATGGGGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCTCGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGc < 1:393850/251‑1 (MQ=255) tCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACa > 1:338102/1‑237 (MQ=255) ggcaggcaGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGACAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGt > 1:148187/1‑251 (MQ=255) gagggaggTCCAAGAGGCCCAAGCCGAAATAGTGATGGAGCAGAACAA‑AAGGGTAGGCGCGGAGGGGGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTg < 2:138996/246‑1 (MQ=255) agggcaggCCCA‑AAACCCCAAGCCGAAATAGTGTTTGAGCGGCGAAA‑AAGTGTAAGCCCCGAGGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTgg < 1:206370/249‑1 (MQ=255) ggcccaagaggcccaggcataaaTAGTGATGGAGCAGC‑CAAGATGTGTAACCGCGGATGTCAAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCCTCACCGTGGAGCCa < 2:131761/230‑1 (MQ=255) gCCCAAGCCGTAATAGAGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGACACCATAAACGgcc > 2:170055/1‑182 (MQ=255) cAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGcc > 2:90325/1‑250 (MQ=255) gCCGTAATAGTGATGGAGCAGCGCAA‑AAGTGAAAGCGCCGAGGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGaa < 1:149414/251‑1 (MQ=255) tAATAGTGATTGAGCAGCGCAA‑AAGCGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTAAGGGTGGCAATATCAACCGTCCCGCGTGAAACCATAAACGGCCACGCTACCGCAAGCACCAACAGCGCCAAGAGGAACAGTTTCTGCTTCACCGTGAAGCCATCACTGGCGGGAAGAATaa > 2:345959/1‑250 (MQ=255) aaTAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAAc > 1:278885/1‑251 (MQ=255) aTAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGt > 1:36179/1‑147 (MQ=255) aaGTGATTGAGCAGCGAAA‑AAGTGTAAGCGCCGAGGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACtt < 1:90325/250‑1 (MQ=255) gATTGAGCAGCGAAA‑AAGTGAAAGCGCCGAGGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCgg < 1:326279/250‑1 (MQ=255) cctgatcAA‑ATGTGTAAGCCCTGAGGGCGAAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTGTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGaa < 2:252580/245‑1 (MQ=255) a‑aaGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGGCCGGaa > 1:252580/1‑243 (MQ=255) gtataaccgcCGA‑GGCGTAAAAAACCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCaa < 1:37884/244‑1 (MQ=255) cccGAGGGCGTAAACA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCt < 1:110842/250‑1 (MQ=255) | CGGGATCTGACTGATTCCGTTCGGGCCGCCGGTAATTTCGGTGTTATTGAGCAGCAATATGCGCACAATTTCGCCGAAACCGAGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACC‑GAGCAGGAAGCCC‑GCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCA‑GAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA‑AAGTGTAAGCGCCGATGGCGTAAAAA‑CCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACC‑ACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACCGTCCCGCGTGAAACCATAAACGGCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCT > NC_000913/3594803‑3595284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |