| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,731,420 | IS1 (–) +9 bp | coding (290‑298/993 nt) | xylF → | xylose ABC transporter periplasmic binding protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 26 (1.480) | 19/292 | 0.0 | 96.1% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3731420 = | 1 (0.060) | coding (290/993 nt) | xylF | xylose ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 21 (1.200) | 19/292 | 0.0 | 95.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3731428 | 1 (0.060) | coding (298/993 nt) | xylF | xylose ABC transporter periplasmic binding protein | |||||
AACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTTGTGAAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGA > NC_000913/3731182‑3731667 | aaCGTTGCTGCACACGCCAAAGAAGTCAAAATAGACATGCCGATTGATGATCTACGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTTGGGCAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACCGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAgga < 1:172254‑M2/250‑4 (MQ=255) aGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTTGTGAAAAAGGCAGAATCGCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAAGGAAGAAACACAAATGTCGCATATTGAAAACATGATAAACCGTGGTGTCGATGTTCTTGTCATTATTCCGTATAACTGTCAGGTATTAAGTAACGTTTTAAggtaatgactccaacttattgatagtgttttatgtt > 1:3751‑M2/1‑215 (MQ=255) tgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAaagaag < 1:66885‑M2/15‑1 (MQ=255) gAACGCTGGCAAAAAGATCGAGATATCTTTGTGAAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:406645‑M2/1‑187 (MQ=255) aaCGCTGGCAAAAAGATCGAGATATCTTTGGGAAAAAGGCAGAATCTCTCGGCGCGAAATTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGGCGCAGATTGAAAGCATGATAAACCGGGGTGTCTATGGTCTTGTCAGTAGTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAgg > 1:221512‑M2/1‑186 (MQ=255) ggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggaccgctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcaggaagttggcagcatcaccACGATGTAAAAGAAGCCAAACAAGAAgg > 1:239371‑M2/162‑189 (MQ=255) nagatATCTTTGTGAAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc < 1:279142‑M2/237‑71 (MQ=255) agcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACg < 1:404171‑M2/99‑1 (MQ=255) ngcAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc < 1:272113‑M2/250‑103 (MQ=255) gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagacaaagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTACAGTATTAGCTTACGACCGTATGCTTAACGATGCGGATATCGTTTTTTATATTTCTTTCGATAACGAAAAAGACGGTGAACTGCAg > 1:336775‑M2/127‑245 (MQ=255) aaaGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca > 1:30120‑M2/1‑130 (MQ=255) gccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAAc > 1:185917‑M2/119‑180 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTc > 1:165905‑M2/118‑251 (MQ=255) tGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttctatgttcagataatgcccgatgacgttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagat > 1:187053‑M2/1‑122 (MQ=255) ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacacaatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAACAAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGa > 1:63821‑M2/108‑164 (MQ=255) aaaatGGCAATGAATAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGGCGATGTTCTTGTCATTATGCCGTATAACGGTCAGGTATTAAGTAACGATGTAAggtaatgactccaacttattgatagtgtttgatgttaagagaaggcccgatgactttgtcatgcagagccaccgagttggagaacgacagtgacttacgtcccagccgtgccaggtgctgcctcagattcatgttatgcc > 1:370058‑M2/2‑111 (MQ=255) gCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctca < 1:253498‑M2/250‑146 (MQ=255) aagaaACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcgtgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcaggtgctgcctcagattcang > 1:349157‑M2/1‑99 (MQ=255) agggacagctgatagaaaccgaagccactggcgcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACACGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAgg > 1:344758‑M2/84‑203 (MQ=255) agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATgg < 1:189606‑M2/168‑1 (MQ=255) nctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTc > 1:263194‑M2/77‑251 (MQ=255) nnnnnnnnnnaannnnnatanacCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc > 2:279142‑M2/11‑84 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAgg > 1:36711‑M2/76‑195 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGcc < 1:298580‑M2/178‑1 (MQ=255) aaCATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgtgttatgtgcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccttgccaggtgctgcctcagattcaggttatgccgctcaattcgcttcgtatatcgcttgctgattacgtgc > 1:319045‑M2/1‑73 (MQ=255) tGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaactttttgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc > 1:198850‑M2/1‑69 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTCAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGCTGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCCAAAGCCCTGGTCGATATTGTTCCGCAAGGTCATTACTTCCTGATg > 1:61563‑M2/60‑226 (MQ=255) nactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGc > 1:262830‑M2/59‑74 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGc < 2:262830‑M2/16‑1 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGAATTaaa > 1:207323‑M2/59‑93 (MQ=255) cctcaaaagcaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGTCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTc < 1:161829‑M2/203‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTagn < 1:272983‑M2/43‑2 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGc > 2:272983‑M2/49‑91 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACAGTATGATTAACGATGCGGat > 1:319944‑M2/49‑119 (MQ=255) cctcaaaaacaccatcatacactaaatcagnaagntggcngcntcaccACTTTGTAAANGAAGCCAAACAAGAAGGCATGAAAGTATTAGCTGACGACCGTATNNTNNNCNATGCGGat < 2:319944‑M2/71‑1 (MQ=255) gtCGATGTTCTTGTCATTATTCCGTATAACGGTAAGGTATTAAGTAACGTTGTAAggtaatgactcccacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg < 1:367843‑M2/165‑111 (MQ=255) tcgttGTTCTTATCATTATTCCGTATCACGGTCAGTTATTAAGTAACGGTGTAAAAGAAGCCAAACAAGTAGGCATTAAAGTATTATCTTCCGCCCTTATGCTTAACGGTGCGAATATCTATTTTTATATTTCTGTCGATTACTAAATAGTCGGTGATCTGCAGTCGGACGCCCTTGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCTGTAGATAACAACGCCACGCTGTTCcg < 1:326067/246‑1 (MQ=255) caaaaacaccatcatacactaaatcagtaaggtggcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCTATTTTTATATTTCTTTCGAGAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCGGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTtccn < 1:78902‑M2/205‑2 (MQ=255) tGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg > 1:240864‑M2/1‑44 (MQ=255) gtaagttggcagcatcaccAAGTTGTAAAAGAAGACAAACAAGAAGGCATTACAGTATTAGCTTACGCCCGTATGATTACAGCTGCGGATATCGATATTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGAAGGAAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATATCAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAAcc > 1:432234‑M2/20‑251 (MQ=255) aaCGGTCANGNNNTNNGTAACGTTGTAAggtaatgactccaacttattgatagtgttttangttcagataatgcccnatnacttngtcntgcagctccaccgattttgagaacgacagcgacttccgtcccagccg < 2:318792‑M2/136‑109 (MQ=255) aaCGGTCAGGTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccg > 1:318792‑M2/1‑28 (MQ=255) gcagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTCCGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGAAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCAAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTg > 1:71688‑M2/12‑251 (MQ=255) nagcatcaccACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAact > 1:46013‑M2/11‑241 (MQ=255) gTATTAAGTAACGTTGTAAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtggcaggtgctgccgcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattgcgtgcagctttcccttcaggcgggattcatacagcggc > 1:200692‑M2/1‑19 (MQ=255) ncatcaccACGTTGTAAAAGAAGCCACACAAGAAGGCATTAACGTATTAGCTTACGACCGTATCATTAACGATGCGGATATCGATTTTTCTATTTCTTTCGATAACGAAAACGTCGGTGCACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGggcgg > 1:87843‑M2/9‑180 (MQ=255) gTAACGTTGTAAggtaatgactccaccttattgatagtgatttatgttcagataatgcccgatgaatttgtcatgcaactcaaccgcttttgagaacgacagcgacttccgtcccagccgtgccagatgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgt < 1:179110‑M2/251‑240 (MQ=255) | AACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTTGTGAAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGA > NC_000913/3731182‑3731667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |