| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,731,420 | IS1 (–) +9 bp | coding (290‑298/993 nt) | xylF → | xylose ABC transporter periplasmic binding protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 26 (1.480) | 19/292 | 0.0 | 96.1% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3731420 = | 1 (0.060) | coding (290/993 nt) | xylF | xylose ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 21 (1.200) | 19/292 | 0.0 | 95.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3731428 | 1 (0.060) | coding (298/993 nt) | xylF | xylose ABC transporter periplasmic binding protein | |||||
CACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3583948‑3584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACAAATACTTTCGCGCCGAGAGATTCTGCCTTTTTCACAAAGATATCTCGATCTTTTTGCCAGCGTTCAAGACGGAGATCATCAATCGCCATACCTATTTTGACTTCTTTGGCGTGTGCAGCAACGTT < NC_000913/3731428‑3731182 CACCCTTTGACGTGGCGCTATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGTCACGGATGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTT > 1:346803/1‑250 ACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCATCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAAGCGGTTGAGTTGCATGACAAATTCATCGGGCATTATCTGAACATAAATCACTATCAATAAGGTGGAGTCATTACCTTACAACGTTAC < 1:179110/251‑1 GCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGCAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGCGGCAGCACCTGCCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATAC > 1:200692/1‑230 GCACGTAATCAGCAAGCGATATACGAAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCAAGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGCACATAACACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTT > 1:319045/1‑251 TGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGC < 1:253498/250‑1 GGCATAACATGAATCTGAGGCAGCACCTGGCACGGCTGGGACGTAAGTCACTGTCGTTCTCCAACTCGGTGGCTCTGCATGACAAAGTCATCGGGCCTTCTCTTAACATCAAACACTATCAATAAGTTGGAGTCATTACCTTACATCGTTACTTAATACCTGACCGTTATACGGCATAATGACAAGAACATCGCCACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTATTCATTGCCATTTt > 1:370058/1‑250 CNTGAATCTGAGGCAGCACCTG‑CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCACGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTT > 1:349157/1‑231 ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAACGTCATCGGGCATTATCTGAACATAGAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACA > 1:187053/1‑250 CCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACA > 1:240864/1‑159 CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTGGGAGTCATTACCTTACAACGTTACTTAATACCTTACCGTTATACGGAATAATGACAAGAACATCGAC < 1:367843/165‑1 CGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTT > 1:318792/1‑136 CGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCANGACNAAGTNATNGGGCATTATCTGAACNTAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACNNANNNCNTGACCGTT < 2:318792/136‑1 GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACAAATACTTTCGCGCCGAGAGATTCTGCn < 1:272113/251‑2 GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAAAAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCA > 1:198850/1‑171 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACAAATACTTTCGCGCCGAGAGATTCTGCCTTTTTCACAAAGATATCTn < 1:279142/238‑2 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTNTATNNNNNTTnnnnnnnnnn > 2:279142/1‑144 TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACAAATACTTT > 1:30120/1‑195 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATACGTTGGAGTCATTACCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACAAATACTTTCGCGCCGAGAGATTCTGCCTTTTTCACAAAGATATCTCGATCTTTTTGCCAGCGTTC > 1:406645/1‑251 AACATAAAACACTATCAATAAGTTGGAGTCATTACCTTAAAACGTTACTTAATACCTGACAGTTATACGGAATAATGACAAGAACATCGACACCACGGTTTATCATGTTTTCAATATGCGACATTTGTGTTTCTTCCTTGCCATTTGCAGACTGTACAAATACTTTCGCGCCGAGCGATTCTGCCTTTTTCACAAAGATATCTCGATCTTTTTGCCAGCGTTCAAGACGGAGATCATCAATCGCCATACCT > 1:3751/1‑251 tCCTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACGGTACAAATACTTTCGCGCCGAGAGATTCTGCCTTTTGCCCAAAGATATCTCGATCTTTTTGCCAGCGTTCAAGACGTAGATCATCAATCGGCATGTCTATTTTGACTTCTTTGGCGTGTGCAGCAACGTT < 1:172254/249‑1 CCTTACAACGTTACTTAATACCTGACCGTTATACGGACTACTGACAAGACCATAGACACCCCGGTTTATCATGCTTTCAATCTGCGCCATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACAAATAATTTCGCGCCGAGAGATTCTGCCTTTTTCCCAAAGATATCTCGATCTTTTTGCCAGCGTT > 1:221512/1‑188 CACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3583948‑3584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTTTTCAATCTGCGACATTTGTGTTTCTTCATTGCCATTTGCAGACTGTACAAATACTTTCGCGCCGAGAGATTCTGCCTTTTTCACAAAGATATCTCGATCTTTTTGCCAGCGTTCAAGACGGAGATCATCAATCGCCATACCTATTTTGACTTCTTTGGCGTGTGCAGCAACGTT < NC_000913/3731428‑3731182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |