Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,731,420 IS1 (–) +9 bp coding (290‑298/993 nt) xylF → xylose ABC transporter periplasmic binding protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3583428 =NA (NA)26 (1.480) 19/292 0.0 96.1% noncoding (1/768 nt) IS1 repeat region
?NC_000913 3731420 = 1 (0.060)coding (290/993 nt) xylF xylose ABC transporter periplasmic binding protein
* ? NC_000913 = 3584195NA (NA)21 (1.200) 19/292 0.0 95.2% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 3731428 1 (0.060)coding (298/993 nt) xylF xylose ABC transporter periplasmic binding protein

AATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCG  >  NC_000913/3583188‑3583672
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                    
aaTGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtgctgc                                                                                                                                                                                                                                            <  1:127844/251‑1 (MQ=255)
                     aaGAATCCACCTGATTATCTTACTTTTTTAAGAGCAATGAATAGATTCGAAGTTAATGCATTACGACTATTTCGACTCTCGATTCCAGAAACTTAAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATATTGATGATTTAATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACACTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTat                                                                                                                                                                                                                       >  1:61321/1‑251 (MQ=255)
                      aGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTTATGCTGCCAACTTACTGATTTAg                                                                                                                                                                                                                            <  1:127390/245‑1 (MQ=255)
                          tCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACATTCAGTTAACAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATgg                                                                                                                                                                                                                  >  1:197740/1‑251 (MQ=255)
                                           cTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTAGAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGcc                                                                                                                                                                                                                                           <  1:320806/209‑1 (MQ=255)
                                                                gatTCGAAGTTAATGGAGTACGATTATGTAGCCGCTCGATTCCAGAACCTTCAGTTAAAAACCTTTGGGCCGTAAATGAATTTTATAGAAAGAATGATGATTACAGAAACCCTGATCTACAAGAACTGTGAGTGATCGGGGATTATAGCATTGCAATAGTTACTTATGACAGTAAGGGTGATGCTGCCAACATACTGAGTTAGTGTATGATGGGGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAg                                                                                                                                                                            <  1:447505/251‑1 (MQ=37)
                                                                           naTGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCaa                                                                                                                                                                                                                                         >  1:266730/2‑179 (MQ=255)
                                                                                         attTAGCCTCTCGATTCCAGATCCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGATCTGTTAGGGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGan                                                                                                                                                                                                                                                 <  1:51960/157‑2 (MQ=255)
                                                                                                         ncAGAACCTTCAGTTAAAAACCTTTT‑GCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACgg                                                                                                                                  >  1:55354/2‑251 (MQ=255)
                                                                                                          cAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtn                                                                                                                                             <  1:108773/240‑2 (MQ=255)
                                                                                                            nnaCNNNNNGTTNAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCaa                                                                                                                                                                                                                                         <  2:266730/144‑1 (MQ=255)
                                                                                                                        aaaaaCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGan                                                                                                                                                                                                        <  1:85542/167‑2 (MQ=255)
                                                                                                                                                       gAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTc                                                                                                                                                                                  >  1:144059/1‑158 (MQ=255)
                                                                                                                                                              tgatgaTTTCATAAACCCTGATCTACAAGAACTGTTAGTGATCGGGGATTAGAGCATTTCAATATTTACTTATGACATGAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATTATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTcc                                                                                                                                                                      <  1:303911/163‑1 (MQ=255)
                                                                                                                                                              tgatgaTTNCNNNANNCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCNATATTTACTTATGACNTTNAAGGNGATNCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTcc                                                                                                                                                                      >  2:303911/1‑163 (MQ=255)
                                                                                                                                                                                                   gTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaa                                                                                                                              >  1:425333/1‑166 (MQ=255)
                                                                                                                                                                                                          gggATTATATCATTTCAATATTTTCTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTGTTGAGGTGCTCCAGTGGCTTCTGTCTCTATCAGCTGTCCCTCCTGTTCAGCTAc                                                                                                                                                       <  1:38204/134‑1 (MQ=17)
                                                                                                                                                                                                          gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGan                                                                                                                                                                                                        <  1:280945/85‑2 (MQ=255)
                                                                                                                                                                                                          gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAg                                                                                                                                                                                                        >  2:280945/1‑85 (MQ=255)
                                                                                                                                                                                                                                          aTTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGATGCTTCAGTGGCATCTGTTTCTATCAGCTGTCACTCCTGTTCAGATCCTGACGGGGTGGTGCGTAACGGCAAAAGAACCGCCGGACATCAGAGCTATCTCTGCTCTCACTGACGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCCTTGATATGGCCATGAATGGCg  >  1:205491/1‑251 (MQ=11)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                    
AATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCG  >  NC_000913/3583188‑3583672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.