Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,237,684 IS5 (+) +4 bp coding (67‑70/1011 nt) mglC ← D‑galactose/methyl‑galactoside ABC transporter membrane subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2237684 =0 (0.000)27 (1.540) 22/292 0.0 100% coding (70/1011 nt) mglC D‑galactose/methyl‑galactoside ABC transporter membrane subunit
?NC_000913 2288919 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 22376870 (0.000)11 (0.630) 9/292 0.5 100% coding (67/1011 nt) mglC D‑galactose/methyl‑galactoside ABC transporter membrane subunit
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

GCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTG  >  NC_000913/2289893‑2290334
                                                                                                                                                                                                                            |                                                                                                                                                                                                                             
nccATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTg                                                                                                                                                                                                 >  1:90582/2‑251 (MQ=255)
                          gCTCGATGACTTCAACCATGTTTTGCCATGGAAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACAAGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAgagatcggaaga                                                                                                                                                                         >  1:143212/1‑241 (MQ=255)
                                                   ccATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCt                                                                                                                                              >  1:97304/1‑251 (MQ=255)
                                                        gCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGa                                                                                                                                          >  1:191255/1‑250 (MQ=255)
                                                                                     atcgcgtttCTGGGCTGACGGCGCTTACTTCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATAGCAGGGACTTGTGCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACATACCCAGATTGACGCGTTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTaaa                                                                                                            <  1:236271/245‑3 (MQ=21)
                                                                                                   cTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                                                                                                 <  1:26066/216‑1 (MQ=255)
                                                                                                                       aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACTCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGtn                                                                          <  1:115293/251‑2 (MQ=255)
                                                                                                                                   cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTg                                                                                                                                                                                                                      <  1:101582/99‑1 (MQ=40)
                                                                                                                                                        tgatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGCCTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTAtt                                         >  1:144792/1‑251 (MQ=255)
                                                                                                                                                              aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAg                                                                                <  1:202816/206‑1 (MQ=255)
                                                                                                                                                                   gTTCTATGGCTCCAGATGACAAACATGATCTCATATCCGGGACTTGTTAGCACCTTCCCTAACGCTGTCGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATAACCGGAGTCAGttttt                                                                       >  1:410332/1‑210 (MQ=255)
                                                                                                                                                                       tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAGTGGGTACAGAAAAGACCCATAGCTCCATACCCGGAGTCAGTTGTTAAAAACTGTTTAAAGAAATGCACAAGTATtgtg                                      <  1:372290/239‑1 (MQ=255)
                                                                                                                                                                          ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATa                                                                                               >  1:13463/1‑179 (MQ=255)
                                                                                                                                                                            cTCNAGATGACAAACNTGACCTCATATCAGGGACTTGTTCGTACNTTCCATAACGc                                                                                                                                                                                                                        <  2:75382/56‑1 (MQ=14)
                                                                                                                                                                            cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCATAActg                                                                                                                                                                                                                        >  1:75382/1‑54 (MQ=14)
                                                                                                                                                                                 gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAGTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTc                <  1:405068/251‑1 (MQ=255)
                                                                                                                                                                                    gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATACCGCTGTAGACACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTGTTCtt              <  1:353726/250‑1 (MQ=255)
                                                                                                                                                                                                ctcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGCAGCCACCAGAACAGCTATTGCGGAAAGACAACGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAACGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTg  >  1:407336/1‑250 (MQ=255)
                                                                                                                                                                                                         gggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCCGAACGACAAAGCGGAACAGAACCAGATTGATGCCTTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAGAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTCTTGTGATTGATTTTTTAGTTGTTTTTCTtgat           >  1:252003/1‑232 (MQ=255)
                                                                                                                                                                                                                   cgctccTTCCATAACGCTGTAGCCACCAGAACAGATATGGCGGAACGACAAAGAGAAACACAACCAGAGTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTa                                                                                                                           <  1:389138/106‑1 (MQ=255)
                                                                                                                                                                                                                       ccTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCa                                                                                                                                                             <  1:254733/72‑1 (MQ=255)
                                                                                                                                                                                                                         ttNCATNANNCNNTAGNCACCAGAACAGATATTGCGGANNGACAAAGAGNAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTNAAAGCAGTGNNTANAGAATNTNNNCNNNGCNCCATACCCGGAGTCAGTTTNTANNAACTGTNTAAAGAAATGCACAAGTATTGtgatt                                   <  2:97304/192‑1 (MQ=255)
                                                                                                                                                                                                                            |                                                                                                                                                                                                                             
GCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTG  >  NC_000913/2289893‑2290334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.