| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 168354 | 0 (0.000) | 22 (1.350) | 20/270 | 0.0 | 100% | coding (871/2244 nt) | fhuA | ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | = 182568 | 0 (0.000) | coding (106/1158 nt) | cdaR | DNA‑binding transcriptional activator CdaR | |||||
CCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTATCGGCAGCGGCGATCGTGAGCGTATTGGTGAATTGCACGAAGGTGCATTGCTGGTACTTTCACAGGGACGAGTCGTCGATATCGATGACGCGGTAGCACGTCATCTGCACGGTGTGCGGCAGGGGATTAATCTACCGTTACGGCTGGAAGGTGAAATTGTCGGCGTAATTGGCCTGACAGGTGAACCAGAGAATCTGCGTAAA > NC_000913/182325‑182771 | ccTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTATCGGCa < 1:147978/250‑1 (MQ=255) gggAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATATTCCTCATCCTTTAGGAATTTGCAACATGCCGTACGAAAGGTAAATCCTTATGCTACGCCGTGGATAACGGAGAACTTATGGCTGGCTGCCATCTTGATACCCAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaac < 1:315406‑M2/251‑17 (MQ=255) ccTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGACGCAGGATATCGTGGCACGTACAATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTATCg > 1:385609/1‑225 (MQ=255) aCAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggc > 1:143318‑M2/1‑218 (MQ=255) ccATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGAGACCAATAGCAACGTAATGTATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttcc > 1:329157‑M2/1‑193 (MQ=255) natACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggtt < 1:357661‑M2/211‑21 (MQ=255) gTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATAGCTGGATGAAATATTGGTACAAAAATGGCGCAGGATATCGAGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggattccggctcgttct < 1:396116‑M2/219‑67 (MQ=255) aCTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataacctgtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacg > 1:341620‑M2/1‑142 (MQ=255) ttCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATGCCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAGCGTAATGGATGCCCGTGGGCGAATTATCGGCAgcggn < 1:38827/151‑2 (MQ=255) aTGCTAAGCCGTGCATAACGGAGGACTTATGGCTGTCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctcgttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtg > 1:316809‑M2/1‑134 (MQ=255) tGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGAAGGATAACGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaatggttccctctttcggcacccagccgtcataacaggtttccggctcgttctggaagtacgaaaggaaggtaaaattggttttatcatccggacgccaggtgc < 1:431335‑M2/250‑118 (MQ=255) ggaCTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacg < 1:249279‑M2/251‑140 (MQ=255) ttATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCTCATCATCGATACCAATATCGACGTAATGGATGGCCTTGGTCGAATTAtctgcagcggctcaacggttccctctttcggcaaccagccgt > 1:286631‑M2/1‑108 (MQ=255) aTGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTTGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcagctcaacggttccctc > 1:162261‑M2/1‑106 (MQ=255) ctggcATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCCACGTAATGGATGCAAGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaacggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgacc < 1:424119‑M2/251‑154 (MQ=255) ctggcATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggtgccctctttc > 1:136426‑M2/1‑98 (MQ=255) ctggcATATTGCTACCAAAATGGCGCATGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggaaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgacc < 1:339452‑M2/251‑154 (MQ=255) cATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaagaaccggtttccggc > 1:355329‑M2/1‑94 (MQ=255) tGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCCAAAACAATATCAACGTACTGGCTGCCCATGGGCGAATTAtcgacagcagctcaacggttacctctttcggcaaacagccgtaataaccggtttcaggctcgttctggaagtaagaaaggaaggtaaaattggttttatcattaggacgccaggtgaaagacggtgcaatagcataacgatgctcttctgcccctttctgct < 1:297429‑M2/251‑163 (MQ=255) aTACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgg > 1:122141‑M2/1‑87 (MQ=255) ggATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgcctgtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcg > 1:261195‑M2/1‑71 (MQ=255) atCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgc > 1:170725‑M2/1‑67 (MQ=255) cgcATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggatcaccggttacctctttcggcaaccagacgtaataaccggtttccggc < 1:288683‑M2/108‑60 (MQ=255) cgtgccacgatatcaATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgcaagaccggtcaggcgataagag > 1:159695‑M2/8‑48 (MQ=255) tatCAACGTAATGGATTCCCGTGGGCGAATTAgcggcagcggctcaacggttccctctttcggcaac > 1:166323‑M2/1‑32 (MQ=255) | CCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTATCGGCAGCGGCGATCGTGAGCGTATTGGTGAATTGCACGAAGGTGCATTGCTGGTACTTTCACAGGGACGAGTCGTCGATATCGATGACGCGGTAGCACGTCATCTGCACGGTGTGCGGCAGGGGATTAATCTACCGTTACGGCTGGAAGGTGAAATTGTCGGCGTAATTGGCCTGACAGGTGAACCAGAGAATCTGCGTAAA > NC_000913/182325‑182771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |