New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 168354	0 (0.000)	22 (1.350)	20/270	0.0	100%	coding (871/2244 nt)	fhuA	ferrichrome outer membrane transporter/phage receptor
	?	NC_000913	= 182568	0 (0.000)					coding (106/1158 nt)	cdaR	DNA‑binding transcriptional activator CdaR

CTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/168152‑168354 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgccgaTAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCCTCCGTTATGCACGGCTTAGCATAAGGAAGTACGTAACGTACGGCATTGTGCAAATGCCTAAAGGATGATGAAGATGTATGGAGTTGTGGTGAAGTTCACAGATTGTAAGGAGAACCCCTTCCC  <  NC_000913/182568‑182334                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGATATCGtggcacg                                                                                                                                                                                             >  1:159695/1‑244                        CGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACAGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCC                                                                                                                                                                      >  1:261195/1‑251                                        CCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTAT                                                                                                                                                      >  1:122141/1‑251                                          AGCAGAAAGGGGCAGAAGAGCATCGTTATGCTATTGCACCGTCTTTCACCTGGCGTCCTAATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCTGAAACCGGTTATTACGGCTGTTTGCCGAAAGAGGTAACCGTTGAGCTGCTGTCGATAATTCGCCCATGGGCAGCCAGTACGTTGATATTGTTTTGGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCA                                                                                                                                                    <  1:297429/251‑1                                                   GGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTTCCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCATGCGCCATTTTGGTAGCAATATGCCAG                                                                                                                                           <  1:339452/251‑1                                                   GGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGTTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACTTGCATCCATTACGTGGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAG                                                                                                                                           <  1:424119/251‑1                                                             GCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGAT                                                                                                                                                                          >  1:170725/1‑210                                                                 CGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCC                                                                                                                             <  1:249279/251‑1                                                                                       gCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCGTACTTCCAGAACGAGCCGGAAACCTGTTATGACGGCTGGGTGCCGAAAGAGGGAACCATTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGTTATCCTTCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCCTCCGTTATGCACGGCTTAGCA                                                                                                        <  1:431335/249‑1                                                                                        CACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAACGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGACAGCCATAAGTCCTCCGTTATGCACGGCTTAGCAT                                                                                                       >  1:316809/1‑250                                                                                               CGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACAGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCCTCCGTTATGCACGGCTTAGCATAAGGAAGT                                                                                               >  1:341620/1‑251                                                                                                                                          AGAACGAGCCGGAATCCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCTCGATATCCTGCGCCATTTTTGTACCAATATTTCATCCAGCTATAAGTCCTCCGTTATGCACGGCTTAGCATAAGGAAGTACGTAACGTAC                                                                                    <  1:396116/219‑1                                                                                                                                                 GCCGGAAACCGGTTCTTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATG                                                                                                                                               >  1:355329/1‑153                                                                                                                                                 GCCGGAAACCGGTTATTACGTCTGGTTGCCGAAAGAGGTAACCGGTGATCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCG                                                                                                                                                                                            <  1:288683/108‑1                                                                                                                                                    GGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATACATTACGTTGCTATTGGTCTCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCCTCCGTTATGCACGGCTTAGCATAAGGAAGTACGTAACGTACGGCATTGTGCAAATGCCTAAAGGATGATGAAGATGTATGG                                            >  1:329157/1‑249                                                                                                                                                                  ACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCAGATAATTCGACCAAGGCCATCCATTACGTCGATATTGGTATCGATGATGAGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAA                                                                                                                                 >  1:286631/1‑150                                                                                                                                                                         GTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGCTAATTCGCCCACGGGAATCCATTACGTTGATA                                                                                                                                                                                                             >  1:166323/1‑67                                                                                                                                                                            GCCGAAAGAGGGAACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCCTCCGTTATGCACGGCTTAGCATAAGGAAGTACGTAACGTACGGCATTGTGCAAATGCCTAAAGGATGATGAAGATGTATGGAGTTGTGGTGAAGTTCACAGATTGT                   >  1:143318/1‑250                                                                                                                                                                               GAAAGAGGGCACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAG                                                                                                                                           >  1:136426/1‑127                                                                                                                                                                                   GAGGGAACCGTTGAGCTGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCAACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCAT                                                                                                                                   >  1:162261/1‑131                                                                                                                                                                                        AACCGTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCCTCCGTTATGCACGGCTTAGCATAAGGAAGTACGTAACGTACGGCATTGTGCAAATGCCTAAAGGATGATGAAGATGTATn                                             <  1:357661/212‑2                                                                                                                                                                                            GTTGAGCCGCTGCCGATAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTGGGTATCAAGATGGCAGCCAGCCATAAGTTCTCCGTTATCCACGGCGTAGCATAAGGATTTACCTTTCGTACGGCATGTTGCAAATTCCTAAAGGATGAGGAATATGTATGGAGTTGTGGTGAAGTTCACAGATTGTAAGGAGAACCCCTTCCC  <  1:315406/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/168152‑168354 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgccgaTAATTCGCCCACGGGCATCCATTACGTTGATATTGGTATCGATGATGCGCATGGTACGTGCCACGATATCCTGCGCCATTTTGGTATCAAGATGCCAGCCAGCCATAAGTCCTCCGTTATGCACGGCTTAGCATAAGGAAGTACGTAACGTACGGCATTGTGCAAATGCCTAAAGGATGATGAAGATGTATGGAGTTGTGGTGAAGTTCACAGATTGTAAGGAGAACCCCTTCCC  <  NC_000913/182568‑182334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.