New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 168354	0 (0.000)	22 (1.350)	20/270	0.0	100%	coding (871/2244 nt)	fhuA	ferrichrome outer membrane transporter/phage receptor
	?	NC_000913	= 182568	0 (0.000)					coding (106/1158 nt)	cdaR	DNA‑binding transcriptional activator CdaR

CTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAACGGTAAGCGTCTGCCGACAGACTTTAATGAAGGGGCGAAGAACAACACCTATTCTCGTAATGAGAAGATGGTCGGCTACAGCTTCGATCACGAATTTAACGACACCTTTACTGTGCGTCAGAACCTGCGCTTTGCTGAAAACAAAACCTCGCAAAACAGCGTTTATGGTTACGGCGTCTGCTCCGATCCGGCGAATGCTTACAGCAAACAGTGTGCGGCATTAGCGCCAGCGGA  >  NC_000913/168152‑168589                                                                                                                                                                                                           |                                                                                                                                                                                                                                            ctctTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattgatatcgtggcacg                                                                                                                                                                                             >  1:159695‑M1/1‑203 (MQ=255)                        cgcgTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACAGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcc                                                                                                                                                                      >  1:261195‑M1/1‑180 (MQ=255)                                        ccAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtat                                                                                                                                                      >  1:122141‑M1/1‑164 (MQ=255)                                          agcagAAAGGGGCAGAAGAGCATCGTTATGCTATTGCACCGTCTTTCACCTGGCGTCCTAATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCTGAAACCGGTTATTACGGCTGTTTGCCGAAAGAGGTAACCGTTGAGCTGCTGTCGAtaattcgcccatgggcagccagtacgttgatattgttttggatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatca                                                                                                                                                    <  1:297429‑M1/251‑90 (MQ=255)                                                   ggTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTTCCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcatgcgccattttggtagcaatatgccag                                                                                                                                           <  1:339452‑M1/251‑99 (MQ=255)                                                   ggTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGTTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacttgcatccattacgtggatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccag                                                                                                                                           <  1:424119‑M1/251‑99 (MQ=255)                                                             gcagcGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgat                                                                                                                                                                          >  1:170725‑M1/1‑143 (MQ=255)                                                                 cGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcc                                                                                                                             <  1:249279‑M1/251‑113 (MQ=255)                                                                                       gcaCCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCGTACTTCCAGAACGAGCCGGAAACCTGTTATGACGGCTGGGTGCCGAAAGAGGGAACCATTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgttatccttcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagca                                                                                                        <  1:431335‑M1/249‑134 (MQ=255)                                                                                        cACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAACGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagacagccataagtcctccgttatgcacggcttagcat                                                                                                       >  1:316809‑M1/1‑116 (MQ=255)                                                                                               cGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACAGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagt                                                                                               >  1:341620‑M1/1‑109 (MQ=255)                                                                                                                                          aGAACGAGCCGGAATCCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgcctcgatatcctgcgccatttttgtaccaatatttcatccagctataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtac                                                                                    <  1:396116‑M1/219‑154 (MQ=255)                                                                                                                                                 gCCGGAAACCGGTTCTTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatg                                                                                                                                               >  1:355329‑M1/1‑59 (MQ=255)                                                                                                                                                 gCCGGAAACCGGTTATTACGTCTGGTTGCCGAAAGAGGTAACCGGTGATCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcg                                                                                                                                                                                            <  1:288683‑M1/108‑50 (MQ=255)                                                                                                                                                    ggAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatacattacgttgctattggtctcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgtatgg                                            >  1:329157‑M1/1‑56 (MQ=255)                                                                                                                                                                  aCGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCAGAtaattcgaccaaggccatccattacgtcgatattggtatcgatgatgagcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataa                                                                                                                                 >  1:286631‑M1/1‑42 (MQ=255)                                                                                                                                                                         gTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGCtaattcgcccacgggaatccattacgttgata                                                                                                                                                                                                             >  1:166323‑M1/1‑35 (MQ=255)                                                                                                                                                                            gCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgtatggagttgtggtgaagttcacagattgt                   >  1:143318‑M1/1‑32 (MQ=255)                                                                                                                                                                               gAAAGAGGGCACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccag                                                                                                                                           >  1:136426‑M1/1‑29 (MQ=255)                                                                                                                                                                                   gagGGAACCGTTGAGCTGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgcaacgatatcctgcgccattttggtatcaagatgccagccagccat                                                                                                                                   >  1:162261‑M1/1‑25 (MQ=255)                                                                                                                                                                                        aaCCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgtatn                                             <  1:357661‑M1/212‑193 (MQ=255)                                                                                                                                                                                            gTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccatttgggtatcaagatggcagccagccataagttctccgttatccacggcgtagcataaggatttacctttcgtacggcatgttgcaaattcctaaaggatgaggaatatgtatggagttgtggtgaagttcacagattgtaaggagaaccccttccc  <  1:315406‑M1/251‑236 (MQ=255)                                                                                                                                                                                                           |                                                                                                                                                                                                                                            CTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAACGGTAAGCGTCTGCCGACAGACTTTAATGAAGGGGCGAAGAACAACACCTATTCTCGTAATGAGAAGATGGTCGGCTACAGCTTCGATCACGAATTTAACGACACCTTTACTGTGCGTCAGAACCTGCGCTTTGCTGAAAACAAAACCTCGCAAAACAGCGTTTATGGTTACGGCGTCTGCTCCGATCCGGCGAATGCTTACAGCAAACAGTGTGCGGCATTAGCGCCAGCGGA  >  NC_000913/168152‑168589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.