breseq  version 0.39.0  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
MC JC 1,299,499 Δ1,199 bp insH21 insH21
MC JC 1,978,503 Δ776 bp insB5–insA5 insB5, insA5
JC JC 1,995,620 IS5 (–) +4 bp intergenic (‑261/‑32) uvrY ← / → yecU DNA‑binding transcriptional activator UvrY/protein YecU
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 164561 164613 53 2 [1] [1] 2 hrpB/mrcB RNA‑dependent NTPase HrpB/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB
* * ÷ NC_000913 802103 802133 31 2 [1] [1] 2 ybhI putative tricarboxylate transporter
* * ÷ NC_000913 3239541 3239684 144 2 [1] [1] 2 [alx] [alx]
* * ÷ NC_000913 3423910–3424231 3424444–3424238 8–535 3 [1] [1] 2 rrlD 23S ribosomal RNA
* * ÷ NC_000913 3883419 3883471 53 2 [0] [0] 2 dnaA chromosomal replication initiator protein DnaA
* * ÷ NC_000913 4070460 4070487 28 2 [1] [1] 2 yihR/yihS putative sulfoquinovose mutarotase YihR/sulfoquinovose isomerase

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780514 (1.090)5 (0.430) 4/286 0.7 33.8% coding (305/630 nt) ycfK protein StfP
?NC_000913 = 1209602 7 (0.610)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase