Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3883419	3883471	53	2 [0]	[0] 2	dnaA	chromosomal replication initiator protein DnaA

CGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGG  >  NC_000913/3883472‑3883518 |                                               cGTTTGCGNNACNNGNTNGGAGCNGACTTCAAAACGCAGCTGTgggg  >  2:194881/1‑47 (MQ=255) cGTTTGCCTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTgggg  <  1:194881/47‑1 (MQ=255) |                                               CGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGG  >  NC_000913/3883472‑3883518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑