mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 321,260 | A→T | intergenic (+179/‑348) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| JC JC | 1,995,620 | IS5 (–) +4 bp | intergenic (‑261/‑32) | uvrY ← / → yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 354596 | 354671 | 76 | 83 [0] | [26] 28 | prpE/codB | propionyl‑CoA synthetase/cytosine transporter |
| * | * | ÷ | NC_000913 | 361657 | 362203 | 547 | 99 [0] | [0] 91 | [lacA]–[lacY] | [lacA],[lacY] |
| * | * | ÷ | NC_000913 | 3423839–3424232 | 3424457–3424239 | 8–619 | 29 [26] | [25] 28 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3883257 | 3883558 | 302 | 29 [27] | [27] 28 | dnaA | chromosomal replication initiator protein DnaA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 99 (1.110) | 64/586 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 361656 | 0 (0.000) | coding (205/612 nt) | lacA | galactoside O‑acetyltransferase | |||||
| * | ? | NC_000913 | = 71265 | 72 (0.810) | 82 (0.920) | 53/588 | 0.3 | 69.5% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 354595 | 0 (0.000) | intergenic (+3/‑327) | prpE/codB | propionyl‑CoA synthetase/cytosine transporter | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 90 (1.010) | 62/588 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 362204 = | 0 (0.000) | coding (976/1254 nt) | lacY | lactose permease | |||||
| * | ? | NC_000913 | 1207790 = | 25 (0.280) | 73 (0.860) | 53/556 | 0.3 | 74.2% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 27 (0.320) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 28 (0.310) | 57 (0.670) | 42/556 | 0.7 | 68.1% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 27 (0.320) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||