#=GENOME_DIFF	1.0
#=CREATED	03:16:23 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9762_S41_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9762_S41_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9762_S41_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9762_S41_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9762_S41_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	434169719
#=CONVERTED-READS	1470070
#=INPUT-BASES	434265568
#=INPUT-READS	1470398
#=MAPPED-BASES	414216149
#=MAPPED-READS	1403311
DEL	1	140,150	NC_000913	257908	776
SNP	2	24	NC_000913	309381	T
SNP	3	25	NC_000913	309985	A
SNP	4	27	NC_000913	321260	T
DEL	5	143,163	NC_000913	1299499	1199
DEL	6	144,166	NC_000913	1978503	776
MOB	7	164,167	NC_000913	1995620	IS5	-1	4
DEL	8	115,116	NC_000913	2173363	2
INS	9	132	NC_000913	3560455	G
INS	10	137,138	NC_000913	4296381	GC
RA	11	.	NC_000913	36	0	C	A	bias_e_value=0.105011	bias_p_value=2.26237e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.3	fisher_strand_p_value=1.0435e-09	frequency=2.083e-01	ks_quality_p_value=1	major_base=C	major_cov=71/24	major_frequency=7.917e-01	minor_base=A	minor_cov=2/23	new_cov=2/23	polymorphism_frequency=2.083e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=71/24	total_cov=73/47
RA	12	.	NC_000913	58065	0	C	A	bias_e_value=0.236849	bias_p_value=5.10269e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.5	fisher_strand_p_value=2.45001e-09	frequency=4.019e-01	ks_quality_p_value=1	major_base=C	major_cov=26/38	major_frequency=5.981e-01	minor_base=A	minor_cov=41/2	new_cov=41/2	polymorphism_frequency=4.019e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=26/38	total_cov=67/42
RA	13	.	NC_000913	70289	0	G	T	bias_e_value=2186380	bias_p_value=0.471035	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.5	fisher_strand_p_value=0.169888	frequency=5.116e-01	ks_quality_p_value=1	major_base=T	major_cov=41/69	major_frequency=5.116e-01	minor_base=G	minor_cov=49/56	new_cov=41/69	polymorphism_frequency=5.116e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=49/56	total_cov=90/126
RA	14	.	NC_000913	70371	0	T	C	bias_e_value=1350420	bias_p_value=0.290936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.2	fisher_strand_p_value=0.145732	frequency=5.513e-01	ks_quality_p_value=0.573284	major_base=C	major_cov=49/80	major_frequency=5.513e-01	minor_base=T	minor_cov=50/55	new_cov=49/80	polymorphism_frequency=5.513e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=50/55	total_cov=100/136
RA	15	.	NC_000913	70434	0	C	T	bias_e_value=3177820	bias_p_value=0.68463	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.9	fisher_strand_p_value=0.345356	frequency=4.912e-01	ks_quality_p_value=0.926608	major_base=C	major_cov=50/66	major_frequency=5.088e-01	minor_base=T	minor_cov=41/71	new_cov=41/71	polymorphism_frequency=4.912e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=50/66	total_cov=92/137
RA	16	.	NC_000913	70581	0	C	T	bias_e_value=2107250	bias_p_value=0.453986	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.7	fisher_strand_p_value=0.747382	frequency=4.615e-01	ks_quality_p_value=0.214646	major_base=C	major_cov=39/45	major_frequency=5.385e-01	minor_base=T	minor_cov=31/41	new_cov=31/41	polymorphism_frequency=4.615e-01	polymorphism_score=251.2	prediction=polymorphism	ref_cov=39/45	total_cov=70/86
RA	17	.	NC_000913	70740	0	T	G	bias_e_value=3461620	bias_p_value=0.745774	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.9	fisher_strand_p_value=0.378033	frequency=5.312e-01	ks_quality_p_value=1	major_base=G	major_cov=34/34	major_frequency=5.312e-01	minor_base=T	minor_cov=35/25	new_cov=34/34	polymorphism_frequency=5.312e-01	polymorphism_score=182.6	prediction=polymorphism	ref_cov=35/25	total_cov=69/59
RA	18	.	NC_000913	71079	0	C	T	bias_e_value=4598330	bias_p_value=0.990666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.1	fisher_strand_p_value=0.866517	frequency=4.718e-01	ks_quality_p_value=1	major_base=C	major_cov=35/40	major_frequency=5.282e-01	minor_base=T	minor_cov=33/34	new_cov=33/34	polymorphism_frequency=4.718e-01	polymorphism_score=224.3	prediction=polymorphism	ref_cov=35/40	total_cov=68/75
RA	19	.	NC_000913	71082	0	T	C	bias_e_value=4460920	bias_p_value=0.961062	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.0	fisher_strand_p_value=0.741008	frequency=4.690e-01	ks_quality_p_value=0.990872	major_base=T	major_cov=35/42	major_frequency=5.310e-01	minor_base=C	minor_cov=33/35	new_cov=33/35	polymorphism_frequency=4.690e-01	polymorphism_score=213.9	prediction=polymorphism	ref_cov=35/42	total_cov=68/77
RA	20	.	NC_000913	71085	0	T	C	bias_e_value=4533040	bias_p_value=0.9766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.6	fisher_strand_p_value=0.867761	frequency=4.755e-01	ks_quality_p_value=0.912252	major_base=T	major_cov=35/40	major_frequency=5.245e-01	minor_base=C	minor_cov=33/35	new_cov=33/35	polymorphism_frequency=4.755e-01	polymorphism_score=218.5	prediction=polymorphism	ref_cov=35/40	total_cov=68/75
RA	21	.	NC_000913	71109	0	T	C	bias_e_value=3977290	bias_p_value=0.856869	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.2	fisher_strand_p_value=0.616292	frequency=4.653e-01	ks_quality_p_value=0.835938	major_base=T	major_cov=35/42	major_frequency=5.347e-01	minor_base=C	minor_cov=34/33	new_cov=34/33	polymorphism_frequency=4.653e-01	polymorphism_score=215.8	prediction=polymorphism	ref_cov=35/42	total_cov=69/75
RA	22	.	NC_000913	71175	0	A	G	bias_e_value=4199780	bias_p_value=0.904802	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.6	fisher_strand_p_value=0.626295	frequency=5.135e-01	ks_quality_p_value=0.952749	major_base=G	major_cov=39/37	major_frequency=5.135e-01	minor_base=A	minor_cov=34/38	new_cov=39/37	polymorphism_frequency=5.135e-01	polymorphism_score=237.1	prediction=polymorphism	ref_cov=34/38	total_cov=74/75
RA	23	.	NC_000913	71214	0	T	C	bias_e_value=2916370	bias_p_value=0.628304	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.2	fisher_strand_p_value=0.499071	frequency=5.108e-01	ks_quality_p_value=0.548365	major_base=C	major_cov=38/33	major_frequency=5.108e-01	minor_base=T	minor_cov=32/36	new_cov=38/33	polymorphism_frequency=5.108e-01	polymorphism_score=224.5	prediction=polymorphism	ref_cov=32/36	total_cov=70/69
RA	24	.	NC_000913	309381	0	C	T	consensus_score=310.2	frequency=1	major_base=T	major_cov=39/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/52
RA	25	.	NC_000913	309985	0	T	A	consensus_score=317.0	frequency=1	major_base=A	major_cov=33/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/57
RA	26	.	NC_000913	314594	0	G	T	bias_e_value=0.0351704	bias_p_value=7.57713e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.8	fisher_strand_p_value=3.31951e-10	frequency=3.053e-01	ks_quality_p_value=1	major_base=G	major_cov=43/23	major_frequency=6.947e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.053e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=43/23	total_cov=43/52
RA	27	.	NC_000913	321260	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=549.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=67/88	major_frequency=9.873e-01	minor_base=C	minor_cov=1/1	new_cov=67/88	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/89
RA	28	.	NC_000913	581115	0	C	A	bias_e_value=30754.9	bias_p_value=0.00662585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.3	fisher_strand_p_value=0.00160276	frequency=2.547e-01	ks_quality_p_value=0.509752	major_base=C	major_cov=49/30	major_frequency=7.453e-01	minor_base=A	minor_cov=7/20	new_cov=7/20	polymorphism_frequency=2.547e-01	polymorphism_score=72.5	prediction=polymorphism	ref_cov=49/30	total_cov=56/50
RA	29	.	NC_000913	581121	0	A	C	bias_e_value=4703.86	bias_p_value=0.0010134	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.2	fisher_strand_p_value=0.000113633	frequency=2.368e-01	ks_quality_p_value=0.872741	major_base=A	major_cov=57/30	major_frequency=7.632e-01	minor_base=C	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.368e-01	polymorphism_score=77.2	prediction=polymorphism	ref_cov=57/30	total_cov=63/51
RA	30	.	NC_000913	581127	0	G	A	bias_e_value=4306.16	bias_p_value=0.000927722	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.8	fisher_strand_p_value=0.000113633	frequency=2.368e-01	ks_quality_p_value=0.791373	major_base=G	major_cov=57/30	major_frequency=7.632e-01	minor_base=A	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.368e-01	polymorphism_score=76.8	prediction=polymorphism	ref_cov=57/30	total_cov=63/51
RA	31	.	NC_000913	581130	0	G	A	bias_e_value=4015.98	bias_p_value=0.000865204	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.1	fisher_strand_p_value=0.00013105	frequency=2.348e-01	ks_quality_p_value=0.635197	major_base=G	major_cov=57/31	major_frequency=7.652e-01	minor_base=A	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.348e-01	polymorphism_score=76.0	prediction=polymorphism	ref_cov=57/31	total_cov=63/53
RA	32	.	NC_000913	581139	0	C	A	bias_e_value=447.049	bias_p_value=9.63126e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.8	fisher_strand_p_value=0.000313627	frequency=2.328e-01	ks_quality_p_value=0.023997	major_base=C	major_cov=56/33	major_frequency=7.672e-01	minor_base=A	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.328e-01	polymorphism_score=75.1	prediction=polymorphism	ref_cov=56/33	total_cov=62/54
RA	33	.	NC_000913	581141	0	G	A	bias_e_value=12334.9	bias_p_value=0.00265745	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.3	fisher_strand_p_value=0.000313627	frequency=2.328e-01	ks_quality_p_value=0.926706	major_base=G	major_cov=56/33	major_frequency=7.672e-01	minor_base=A	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.328e-01	polymorphism_score=73.7	prediction=polymorphism	ref_cov=56/33	total_cov=62/54
RA	34	.	NC_000913	581145	0	C	T	bias_e_value=15944.6	bias_p_value=0.00343511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.7	fisher_strand_p_value=0.000387944	frequency=2.288e-01	ks_quality_p_value=1	major_base=C	major_cov=56/35	major_frequency=7.712e-01	minor_base=T	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.288e-01	polymorphism_score=66.6	prediction=polymorphism	ref_cov=56/35	total_cov=62/56
RA	35	.	NC_000913	581154	0	A	G	bias_e_value=6263.62	bias_p_value=0.00134944	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.6	fisher_strand_p_value=0.000404864	frequency=2.250e-01	ks_quality_p_value=0.336651	major_base=A	major_cov=57/36	major_frequency=7.750e-01	minor_base=G	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.250e-01	polymorphism_score=75.2	prediction=polymorphism	ref_cov=57/36	total_cov=63/57
RA	36	.	NC_000913	581175	0	T	C	bias_e_value=4193.85	bias_p_value=0.000903526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.1	fisher_strand_p_value=0.0001753	frequency=2.250e-01	ks_quality_p_value=0.49819	major_base=T	major_cov=59/34	major_frequency=7.750e-01	minor_base=C	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.250e-01	polymorphism_score=73.9	prediction=polymorphism	ref_cov=59/34	total_cov=65/55
RA	37	.	NC_000913	581178	0	T	G	bias_e_value=5889.32	bias_p_value=0.0012688	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.7	fisher_strand_p_value=0.000300255	frequency=2.368e-01	ks_quality_p_value=0.42388	major_base=T	major_cov=55/32	major_frequency=7.632e-01	minor_base=G	minor_cov=6/21	new_cov=6/21	polymorphism_frequency=2.368e-01	polymorphism_score=72.1	prediction=polymorphism	ref_cov=55/32	total_cov=62/53
RA	38	.	NC_000913	581196	0	C	G	bias_e_value=35581.3	bias_p_value=0.00766566	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.6	fisher_strand_p_value=0.00119148	frequency=2.632e-01	ks_quality_p_value=0.809955	major_base=C	major_cov=50/34	major_frequency=7.368e-01	minor_base=G	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.632e-01	polymorphism_score=92.1	prediction=polymorphism	ref_cov=50/34	total_cov=58/57
RA	39	.	NC_000913	581199	0	A	C	bias_e_value=23840.6	bias_p_value=0.00513623	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.8	fisher_strand_p_value=0.000638765	frequency=2.609e-01	ks_quality_p_value=0.95729	major_base=A	major_cov=51/34	major_frequency=7.391e-01	minor_base=C	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.609e-01	polymorphism_score=84.6	prediction=polymorphism	ref_cov=51/34	total_cov=58/57
RA	40	.	NC_000913	581202	0	T	A	bias_e_value=32757.6	bias_p_value=0.00705732	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.3	fisher_strand_p_value=0.00253147	frequency=2.632e-01	ks_quality_p_value=0.346838	major_base=T	major_cov=48/36	major_frequency=7.368e-01	minor_base=A	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.632e-01	polymorphism_score=117.6	prediction=polymorphism	ref_cov=48/36	total_cov=55/60
RA	41	.	NC_000913	581206	0	A	G	bias_e_value=63956.6	bias_p_value=0.0137788	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.6	fisher_strand_p_value=0.00290343	frequency=2.609e-01	ks_quality_p_value=0.652948	major_base=A	major_cov=47/38	major_frequency=7.391e-01	minor_base=G	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.609e-01	polymorphism_score=83.2	prediction=polymorphism	ref_cov=47/38	total_cov=54/61
RA	42	.	NC_000913	581208	0	T	A	bias_e_value=109907	bias_p_value=0.0236783	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=0.00514883	frequency=2.727e-01	ks_quality_p_value=0.693041	major_base=T	major_cov=43/37	major_frequency=7.273e-01	minor_base=A	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.727e-01	polymorphism_score=117.9	prediction=polymorphism	ref_cov=43/37	total_cov=50/61
RA	43	.	NC_000913	581214	0	T	C	bias_e_value=118744	bias_p_value=0.0255823	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.3	fisher_strand_p_value=0.00557839	frequency=2.703e-01	ks_quality_p_value=0.700737	major_base=T	major_cov=43/38	major_frequency=7.297e-01	minor_base=C	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.703e-01	polymorphism_score=83.3	prediction=polymorphism	ref_cov=43/38	total_cov=50/61
RA	44	.	NC_000913	581220	0	C	T	bias_e_value=305810	bias_p_value=0.0658839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.7	fisher_strand_p_value=0.0168101	frequency=2.857e-01	ks_quality_p_value=0.724767	major_base=C	major_cov=37/38	major_frequency=7.143e-01	minor_base=T	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.857e-01	polymorphism_score=88.3	prediction=polymorphism	ref_cov=37/38	total_cov=47/61
RA	45	.	NC_000913	581223	0	C	T	bias_e_value=300989	bias_p_value=0.0648453	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.2	fisher_strand_p_value=0.0163871	frequency=2.752e-01	ks_quality_p_value=0.729128	major_base=C	major_cov=40/39	major_frequency=7.248e-01	minor_base=T	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.752e-01	polymorphism_score=89.8	prediction=polymorphism	ref_cov=40/39	total_cov=47/62
RA	46	.	NC_000913	581226	0	G	A	bias_e_value=371831	bias_p_value=0.0801075	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.3	fisher_strand_p_value=0.0163953	frequency=2.778e-01	ks_quality_p_value=0.94569	major_base=G	major_cov=39/39	major_frequency=7.222e-01	minor_base=A	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.778e-01	polymorphism_score=89.6	prediction=polymorphism	ref_cov=39/39	total_cov=46/62
RA	47	.	NC_000913	581227	0	A	G	bias_e_value=369361	bias_p_value=0.0795754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=0.0163953	frequency=2.778e-01	ks_quality_p_value=0.937909	major_base=A	major_cov=39/39	major_frequency=7.222e-01	minor_base=G	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.778e-01	polymorphism_score=81.0	prediction=polymorphism	ref_cov=39/39	total_cov=46/62
RA	48	.	NC_000913	581229	0	C	T	bias_e_value=367591	bias_p_value=0.079194	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.3	fisher_strand_p_value=0.0153252	frequency=2.913e-01	ks_quality_p_value=0.997441	major_base=C	major_cov=37/36	major_frequency=7.087e-01	minor_base=T	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.913e-01	polymorphism_score=89.2	prediction=polymorphism	ref_cov=37/36	total_cov=44/59
RA	49	.	NC_000913	581232	0	C	T	bias_e_value=342109	bias_p_value=0.0737041	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.2	fisher_strand_p_value=0.0157378	frequency=2.941e-01	ks_quality_p_value=0.888719	major_base=C	major_cov=36/36	major_frequency=7.059e-01	minor_base=T	minor_cov=7/23	new_cov=7/23	polymorphism_frequency=2.941e-01	polymorphism_score=87.5	prediction=polymorphism	ref_cov=36/36	total_cov=44/59
RA	50	.	NC_000913	581241	0	G	T	bias_e_value=252566	bias_p_value=0.0544129	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.0	fisher_strand_p_value=0.00964839	frequency=3.540e-01	ks_quality_p_value=0.999703	major_base=G	major_cov=37/36	major_frequency=6.460e-01	minor_base=T	minor_cov=10/30	new_cov=10/30	polymorphism_frequency=3.540e-01	polymorphism_score=95.6	prediction=polymorphism	ref_cov=37/36	total_cov=47/66
RA	51	.	NC_000913	581250	0	T	C	bias_e_value=385327	bias_p_value=0.083015	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.3	fisher_strand_p_value=0.0166321	frequency=4.167e-01	ks_quality_p_value=0.974407	major_base=T	major_cov=30/33	major_frequency=5.833e-01	minor_base=C	minor_cov=11/34	new_cov=11/34	polymorphism_frequency=4.167e-01	polymorphism_score=135.4	prediction=polymorphism	ref_cov=30/33	total_cov=41/67
RA	52	.	NC_000913	581253	0	T	C	bias_e_value=365674	bias_p_value=0.078781	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.9	fisher_strand_p_value=0.0152373	frequency=4.019e-01	ks_quality_p_value=0.996718	major_base=T	major_cov=30/34	major_frequency=5.981e-01	minor_base=C	minor_cov=10/33	new_cov=10/33	polymorphism_frequency=4.019e-01	polymorphism_score=123.5	prediction=polymorphism	ref_cov=30/34	total_cov=41/67
RA	53	.	NC_000913	581259	0	A	G	bias_e_value=1096830	bias_p_value=0.236302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.2	fisher_strand_p_value=0.0740172	frequency=4.220e-01	ks_quality_p_value=0.846908	major_base=A	major_cov=29/34	major_frequency=5.780e-01	minor_base=G	minor_cov=13/33	new_cov=13/33	polymorphism_frequency=4.220e-01	polymorphism_score=139.3	prediction=polymorphism	ref_cov=29/34	total_cov=42/67
RA	54	.	NC_000913	581275	0	G	A	bias_e_value=1312680	bias_p_value=0.282805	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.2	fisher_strand_p_value=0.0879415	frequency=4.355e-01	ks_quality_p_value=0.91306	major_base=G	major_cov=29/41	major_frequency=5.645e-01	minor_base=A	minor_cov=14/40	new_cov=14/40	polymorphism_frequency=4.355e-01	polymorphism_score=176.9	prediction=polymorphism	ref_cov=29/41	total_cov=43/81
RA	55	.	NC_000913	581286	0	G	C	bias_e_value=923307	bias_p_value=0.198918	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.3	fisher_strand_p_value=0.0504505	frequency=4.333e-01	ks_quality_p_value=0.985327	major_base=G	major_cov=28/40	major_frequency=5.667e-01	minor_base=C	minor_cov=12/40	new_cov=12/40	polymorphism_frequency=4.333e-01	polymorphism_score=171.4	prediction=polymorphism	ref_cov=28/40	total_cov=42/81
RA	56	.	NC_000913	581289	0	A	G	bias_e_value=1388740	bias_p_value=0.299192	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=0.086898	frequency=4.417e-01	ks_quality_p_value=1	major_base=A	major_cov=28/39	major_frequency=5.583e-01	minor_base=G	minor_cov=14/39	new_cov=14/39	polymorphism_frequency=4.417e-01	polymorphism_score=141.7	prediction=polymorphism	ref_cov=28/39	total_cov=42/79
RA	57	.	NC_000913	581290	0	C	A	bias_e_value=1801970	bias_p_value=0.388218	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=0.126586	frequency=4.355e-01	ks_quality_p_value=1	major_base=C	major_cov=28/42	major_frequency=5.645e-01	minor_base=A	minor_cov=14/40	new_cov=14/40	polymorphism_frequency=4.355e-01	polymorphism_score=162.0	prediction=polymorphism	ref_cov=28/42	total_cov=42/82
RA	58	.	NC_000913	581291	0	G	A	bias_e_value=1395920	bias_p_value=0.300738	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.9	fisher_strand_p_value=0.0875321	frequency=4.426e-01	ks_quality_p_value=1	major_base=G	major_cov=28/40	major_frequency=5.574e-01	minor_base=A	minor_cov=14/40	new_cov=14/40	polymorphism_frequency=4.426e-01	polymorphism_score=140.9	prediction=polymorphism	ref_cov=28/40	total_cov=42/82
RA	59	.	NC_000913	581295	0	T	C	bias_e_value=1801970	bias_p_value=0.388218	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.7	fisher_strand_p_value=0.126586	frequency=4.355e-01	ks_quality_p_value=1	major_base=T	major_cov=28/42	major_frequency=5.645e-01	minor_base=C	minor_cov=14/40	new_cov=14/40	polymorphism_frequency=4.355e-01	polymorphism_score=167.7	prediction=polymorphism	ref_cov=28/42	total_cov=42/82
RA	60	.	NC_000913	581301	0	C	T	bias_e_value=1801970	bias_p_value=0.388218	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.4	fisher_strand_p_value=0.126586	frequency=4.355e-01	ks_quality_p_value=1	major_base=C	major_cov=28/42	major_frequency=5.645e-01	minor_base=T	minor_cov=14/40	new_cov=14/40	polymorphism_frequency=4.355e-01	polymorphism_score=165.8	prediction=polymorphism	ref_cov=28/42	total_cov=42/82
RA	61	.	NC_000913	581322	0	C	T	bias_e_value=2666690	bias_p_value=0.574513	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.1	fisher_strand_p_value=0.29364	frequency=4.964e-01	ks_quality_p_value=0.798403	major_base=C	major_cov=30/39	major_frequency=5.036e-01	minor_base=T	minor_cov=23/45	new_cov=23/45	polymorphism_frequency=4.964e-01	polymorphism_score=231.5	prediction=polymorphism	ref_cov=30/39	total_cov=55/84
RA	62	.	NC_000913	581335	0	C	A	bias_e_value=2273730	bias_p_value=0.489854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.0	fisher_strand_p_value=0.182398	frequency=4.830e-01	ks_quality_p_value=0.990662	major_base=C	major_cov=34/42	major_frequency=5.170e-01	minor_base=A	minor_cov=24/47	new_cov=24/47	polymorphism_frequency=4.830e-01	polymorphism_score=216.3	prediction=polymorphism	ref_cov=34/42	total_cov=58/89
RA	63	.	NC_000913	581337	0	G	A	bias_e_value=1841460	bias_p_value=0.396726	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.3	fisher_strand_p_value=0.238199	frequency=4.825e-01	ks_quality_p_value=0.548847	major_base=G	major_cov=33/41	major_frequency=5.175e-01	minor_base=A	minor_cov=24/45	new_cov=24/45	polymorphism_frequency=4.825e-01	polymorphism_score=236.0	prediction=polymorphism	ref_cov=33/41	total_cov=57/86
RA	64	.	NC_000913	581380	0	C	G	bias_e_value=4640780	bias_p_value=0.999811	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.4	fisher_strand_p_value=1	frequency=3.972e-01	ks_quality_p_value=0.980639	major_base=C	major_cov=34/51	major_frequency=6.028e-01	minor_base=G	minor_cov=22/34	new_cov=22/34	polymorphism_frequency=3.972e-01	polymorphism_score=187.3	prediction=polymorphism	ref_cov=34/51	total_cov=57/88
RA	65	.	NC_000913	581381	0	A	G	bias_e_value=3754780	bias_p_value=0.808931	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.7	fisher_strand_p_value=0.731093	frequency=4.069e-01	ks_quality_p_value=0.614837	major_base=A	major_cov=35/51	major_frequency=5.931e-01	minor_base=G	minor_cov=22/37	new_cov=22/37	polymorphism_frequency=4.069e-01	polymorphism_score=181.0	prediction=polymorphism	ref_cov=35/51	total_cov=57/88
RA	66	.	NC_000913	581388	0	G	A	bias_e_value=2892640	bias_p_value=0.623191	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.7	fisher_strand_p_value=0.851551	frequency=3.543e-01	ks_quality_p_value=0.316774	major_base=G	major_cov=35/47	major_frequency=6.457e-01	minor_base=A	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.543e-01	polymorphism_score=143.3	prediction=polymorphism	ref_cov=35/47	total_cov=53/75
RA	67	.	NC_000913	581392	0	T	C	bias_e_value=4229480	bias_p_value=0.911202	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.6	fisher_strand_p_value=1	frequency=3.659e-01	ks_quality_p_value=0.609357	major_base=T	major_cov=31/47	major_frequency=6.341e-01	minor_base=C	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.659e-01	polymorphism_score=137.0	prediction=polymorphism	ref_cov=31/47	total_cov=49/75
RA	68	.	NC_000913	581394	0	T	C	bias_e_value=4483190	bias_p_value=0.965861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.9	fisher_strand_p_value=1	frequency=3.659e-01	ks_quality_p_value=0.750346	major_base=T	major_cov=31/47	major_frequency=6.341e-01	minor_base=C	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.659e-01	polymorphism_score=135.9	prediction=polymorphism	ref_cov=31/47	total_cov=49/75
RA	69	.	NC_000913	581397	0	T	C	bias_e_value=4638590	bias_p_value=0.999341	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.5	fisher_strand_p_value=1	frequency=3.629e-01	ks_quality_p_value=0.963917	major_base=T	major_cov=31/48	major_frequency=6.371e-01	minor_base=C	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.629e-01	polymorphism_score=134.0	prediction=polymorphism	ref_cov=31/48	total_cov=49/75
RA	70	.	NC_000913	581398	0	C	G	bias_e_value=4451320	bias_p_value=0.958994	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.8	fisher_strand_p_value=0.846601	frequency=3.719e-01	ks_quality_p_value=0.859492	major_base=C	major_cov=28/48	major_frequency=6.281e-01	minor_base=G	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.719e-01	polymorphism_score=157.4	prediction=polymorphism	ref_cov=28/48	total_cov=49/75
RA	71	.	NC_000913	581404	0	C	G	bias_e_value=4052960	bias_p_value=0.873172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.5	fisher_strand_p_value=0.846773	frequency=3.667e-01	ks_quality_p_value=0.638544	major_base=C	major_cov=29/47	major_frequency=6.333e-01	minor_base=G	minor_cov=18/26	new_cov=18/26	polymorphism_frequency=3.667e-01	polymorphism_score=154.5	prediction=polymorphism	ref_cov=29/47	total_cov=49/75
RA	72	.	NC_000913	581407	0	G	T	bias_e_value=4571280	bias_p_value=0.984839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.7	fisher_strand_p_value=1	frequency=3.629e-01	ks_quality_p_value=0.830998	major_base=G	major_cov=31/48	major_frequency=6.371e-01	minor_base=T	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.629e-01	polymorphism_score=120.0	prediction=polymorphism	ref_cov=31/48	total_cov=49/75
RA	73	.	NC_000913	581410	0	T	A	bias_e_value=4641640	bias_p_value=0.999996	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.3	fisher_strand_p_value=1	frequency=3.659e-01	ks_quality_p_value=0.997335	major_base=T	major_cov=30/48	major_frequency=6.341e-01	minor_base=A	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.659e-01	polymorphism_score=186.2	prediction=polymorphism	ref_cov=30/48	total_cov=48/76
RA	74	.	NC_000913	581412	0	G	T	bias_e_value=4585450	bias_p_value=0.987891	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.6	fisher_strand_p_value=0.848472	frequency=3.571e-01	ks_quality_p_value=1	major_base=G	major_cov=30/51	major_frequency=6.429e-01	minor_base=T	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.571e-01	polymorphism_score=117.8	prediction=polymorphism	ref_cov=30/51	total_cov=48/78
RA	75	.	NC_000913	581413	0	C	T	bias_e_value=4414360	bias_p_value=0.951031	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.8	fisher_strand_p_value=0.703839	frequency=3.600e-01	ks_quality_p_value=1	major_base=C	major_cov=29/51	major_frequency=6.400e-01	minor_base=T	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.600e-01	polymorphism_score=141.8	prediction=polymorphism	ref_cov=29/51	total_cov=47/78
RA	76	.	NC_000913	581416	0	A	G	bias_e_value=3921070	bias_p_value=0.844758	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.0	fisher_strand_p_value=0.555843	frequency=3.750e-01	ks_quality_p_value=0.894839	major_base=A	major_cov=25/50	major_frequency=6.250e-01	minor_base=G	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.750e-01	polymorphism_score=134.3	prediction=polymorphism	ref_cov=25/50	total_cov=43/77
RA	77	.	NC_000913	581421	0	T	A	bias_e_value=4601180	bias_p_value=0.991281	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.0	fisher_strand_p_value=1	frequency=3.409e-01	ks_quality_p_value=0.870886	major_base=T	major_cov=35/52	major_frequency=6.591e-01	minor_base=A	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.409e-01	polymorphism_score=183.8	prediction=polymorphism	ref_cov=35/52	total_cov=53/79
RA	78	.	NC_000913	581423	0	A	C	bias_e_value=4226300	bias_p_value=0.910516	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.8	fisher_strand_p_value=1	frequency=3.383e-01	ks_quality_p_value=0.607974	major_base=A	major_cov=35/53	major_frequency=6.617e-01	minor_base=C	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.383e-01	polymorphism_score=144.5	prediction=polymorphism	ref_cov=35/53	total_cov=53/80
RA	79	.	NC_000913	581425	0	G	A	bias_e_value=4366630	bias_p_value=0.940749	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.2	fisher_strand_p_value=1	frequency=3.409e-01	ks_quality_p_value=0.676135	major_base=G	major_cov=35/52	major_frequency=6.591e-01	minor_base=A	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.409e-01	polymorphism_score=143.5	prediction=polymorphism	ref_cov=35/52	total_cov=53/80
RA	80	.	NC_000913	581428	0	G	T	bias_e_value=3546460	bias_p_value=0.764052	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.0	fisher_strand_p_value=0.852842	frequency=3.538e-01	ks_quality_p_value=0.465878	major_base=G	major_cov=35/49	major_frequency=6.462e-01	minor_base=T	minor_cov=18/28	new_cov=18/28	polymorphism_frequency=3.538e-01	polymorphism_score=119.6	prediction=polymorphism	ref_cov=35/49	total_cov=53/77
RA	81	.	NC_000913	581434	0	A	G	bias_e_value=4421530	bias_p_value=0.952576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.7	fisher_strand_p_value=0.70829	frequency=3.385e-01	ks_quality_p_value=0.999984	major_base=A	major_cov=37/49	major_frequency=6.615e-01	minor_base=G	minor_cov=17/27	new_cov=17/27	polymorphism_frequency=3.385e-01	polymorphism_score=121.8	prediction=polymorphism	ref_cov=37/49	total_cov=54/76
RA	82	.	NC_000913	581437	0	G	A	bias_e_value=3792070	bias_p_value=0.816966	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.0	fisher_strand_p_value=0.709326	frequency=3.516e-01	ks_quality_p_value=0.648073	major_base=G	major_cov=37/46	major_frequency=6.484e-01	minor_base=A	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.516e-01	polymorphism_score=145.9	prediction=polymorphism	ref_cov=37/46	total_cov=55/74
RA	83	.	NC_000913	581440	0	C	G	bias_e_value=4389380	bias_p_value=0.945651	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.0	fisher_strand_p_value=0.851485	frequency=3.516e-01	ks_quality_p_value=0.809139	major_base=C	major_cov=36/47	major_frequency=6.484e-01	minor_base=G	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.516e-01	polymorphism_score=152.5	prediction=polymorphism	ref_cov=36/47	total_cov=55/74
RA	84	.	NC_000913	581443	0	C	G	bias_e_value=875689	bias_p_value=0.188659	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.3	fisher_strand_p_value=0.711139	frequency=3.488e-01	ks_quality_p_value=0.0651512	major_base=C	major_cov=37/47	major_frequency=6.512e-01	minor_base=G	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.488e-01	polymorphism_score=158.7	prediction=polymorphism	ref_cov=37/47	total_cov=55/74
RA	85	.	NC_000913	581455	0	G	A	bias_e_value=4050180	bias_p_value=0.872573	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.4	fisher_strand_p_value=0.586414	frequency=3.433e-01	ks_quality_p_value=0.920388	major_base=G	major_cov=39/49	major_frequency=6.567e-01	minor_base=A	minor_cov=18/28	new_cov=18/28	polymorphism_frequency=3.433e-01	polymorphism_score=144.4	prediction=polymorphism	ref_cov=39/49	total_cov=57/77
RA	86	.	NC_000913	581458	0	T	C	bias_e_value=1736050	bias_p_value=0.374015	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.3	fisher_strand_p_value=0.583196	frequency=3.459e-01	ks_quality_p_value=0.205426	major_base=T	major_cov=39/48	major_frequency=6.541e-01	minor_base=C	minor_cov=18/28	new_cov=18/28	polymorphism_frequency=3.459e-01	polymorphism_score=137.8	prediction=polymorphism	ref_cov=39/48	total_cov=57/77
RA	87	.	NC_000913	581460	0	C	A	bias_e_value=4420650	bias_p_value=0.952387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.4	fisher_strand_p_value=0.714356	frequency=3.358e-01	ks_quality_p_value=0.990727	major_base=C	major_cov=39/50	major_frequency=6.642e-01	minor_base=A	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.358e-01	polymorphism_score=124.1	prediction=polymorphism	ref_cov=39/50	total_cov=57/77
RA	88	.	NC_000913	581476	0	G	C	bias_e_value=3317870	bias_p_value=0.714803	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.3	fisher_strand_p_value=0.347499	frequency=3.307e-01	ks_quality_p_value=1	major_base=G	major_cov=38/47	major_frequency=6.693e-01	minor_base=C	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.307e-01	polymorphism_score=130.7	prediction=polymorphism	ref_cov=38/47	total_cov=55/77
RA	89	.	NC_000913	581482	0	A	G	bias_e_value=4586340	bias_p_value=0.988083	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.6	fisher_strand_p_value=0.849644	frequency=3.256e-01	ks_quality_p_value=1	major_base=A	major_cov=38/49	major_frequency=6.744e-01	minor_base=G	minor_cov=17/25	new_cov=17/25	polymorphism_frequency=3.256e-01	polymorphism_score=119.2	prediction=polymorphism	ref_cov=38/49	total_cov=55/74
RA	90	.	NC_000913	581485	0	C	G	bias_e_value=4543680	bias_p_value=0.978892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.8	fisher_strand_p_value=0.849644	frequency=3.256e-01	ks_quality_p_value=0.943572	major_base=C	major_cov=38/49	major_frequency=6.744e-01	minor_base=G	minor_cov=17/25	new_cov=17/25	polymorphism_frequency=3.256e-01	polymorphism_score=145.5	prediction=polymorphism	ref_cov=38/49	total_cov=55/74
RA	91	.	NC_000913	581488	0	A	C	bias_e_value=4421980	bias_p_value=0.952673	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.5	fisher_strand_p_value=0.708558	frequency=3.281e-01	ks_quality_p_value=1	major_base=A	major_cov=38/48	major_frequency=6.719e-01	minor_base=C	minor_cov=17/25	new_cov=17/25	polymorphism_frequency=3.281e-01	polymorphism_score=123.4	prediction=polymorphism	ref_cov=38/48	total_cov=55/73
RA	92	.	NC_000913	581512	0	A	G	bias_e_value=4539210	bias_p_value=0.97793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.8	fisher_strand_p_value=0.838384	frequency=2.773e-01	ks_quality_p_value=0.951111	major_base=A	major_cov=42/44	major_frequency=7.227e-01	minor_base=G	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=2.773e-01	polymorphism_score=92.0	prediction=polymorphism	ref_cov=42/44	total_cov=57/62
RA	93	.	NC_000913	581513	0	C	T	bias_e_value=4568630	bias_p_value=0.984268	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.2	fisher_strand_p_value=0.838384	frequency=2.773e-01	ks_quality_p_value=0.987547	major_base=C	major_cov=42/44	major_frequency=7.227e-01	minor_base=T	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=2.773e-01	polymorphism_score=101.4	prediction=polymorphism	ref_cov=42/44	total_cov=57/62
RA	94	.	NC_000913	581518	0	C	G	bias_e_value=4351210	bias_p_value=0.937426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.5	fisher_strand_p_value=0.684879	frequency=2.750e-01	ks_quality_p_value=0.97503	major_base=C	major_cov=44/43	major_frequency=7.250e-01	minor_base=G	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=2.750e-01	polymorphism_score=107.0	prediction=polymorphism	ref_cov=44/43	total_cov=59/61
RA	95	.	NC_000913	581524	0	G	A	bias_e_value=4006980	bias_p_value=0.863266	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.0	fisher_strand_p_value=0.53735	frequency=2.623e-01	ks_quality_p_value=0.976955	major_base=G	major_cov=47/43	major_frequency=7.377e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=2.623e-01	polymorphism_score=89.1	prediction=polymorphism	ref_cov=47/43	total_cov=61/61
RA	96	.	NC_000913	581527	0	G	C	bias_e_value=3026440	bias_p_value=0.652018	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.8	fisher_strand_p_value=0.411264	frequency=2.667e-01	ks_quality_p_value=0.711124	major_base=G	major_cov=47/41	major_frequency=7.333e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=2.667e-01	polymorphism_score=103.7	prediction=polymorphism	ref_cov=47/41	total_cov=61/61
RA	97	.	NC_000913	581530	0	C	G	bias_e_value=3605080	bias_p_value=0.77668	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.2	fisher_strand_p_value=0.411264	frequency=2.667e-01	ks_quality_p_value=1	major_base=C	major_cov=47/41	major_frequency=7.333e-01	minor_base=G	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=2.667e-01	polymorphism_score=101.2	prediction=polymorphism	ref_cov=47/41	total_cov=61/59
RA	98	.	NC_000913	847955	0	G	A	bias_e_value=6.53509e-06	bias_p_value=1.40792e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.2	fisher_strand_p_value=4.43487e-14	frequency=3.017e-01	ks_quality_p_value=1	major_base=G	major_cov=57/24	major_frequency=6.983e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.017e-01	polymorphism_score=35.8	prediction=polymorphism	ref_cov=57/24	total_cov=57/59
RA	99	.	NC_000913	1097118	0	C	A	bias_e_value=3261450	bias_p_value=0.702648	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.2	fisher_strand_p_value=0.433176	frequency=2.105e-01	ks_quality_p_value=0.776073	major_base=C	major_cov=10/20	major_frequency=7.895e-01	minor_base=A	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.105e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=10/20	total_cov=14/24
RA	100	.	NC_000913	1097158	0	C	T	bias_e_value=3817600	bias_p_value=0.822466	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.7	fisher_strand_p_value=0.467449	frequency=2.045e-01	ks_quality_p_value=0.998702	major_base=C	major_cov=14/21	major_frequency=7.955e-01	minor_base=T	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=2.045e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=14/21	total_cov=19/25
RA	101	.	NC_000913	1286870	0	C	A	bias_e_value=1109960	bias_p_value=0.239131	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.5	fisher_strand_p_value=0.0637103	frequency=2.063e-01	ks_quality_p_value=1	major_base=C	major_cov=23/27	major_frequency=7.937e-01	minor_base=A	minor_cov=10/3	new_cov=10/3	polymorphism_frequency=2.063e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=23/27	total_cov=33/30
RA	102	.	NC_000913	1427992	0	G	T	bias_e_value=0.0743115	bias_p_value=1.60097e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.7	fisher_strand_p_value=7.26292e-10	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=35/30	major_frequency=6.250e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=3.750e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=35/30	total_cov=35/69
RA	103	.	NC_000913	1466210	0	G	A	bias_e_value=621442	bias_p_value=0.133884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.5	fisher_strand_p_value=0.0296262	frequency=2.162e-01	ks_quality_p_value=1	major_base=G	major_cov=14/44	major_frequency=7.838e-01	minor_base=A	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=2.162e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=14/44	total_cov=23/51
RA	104	.	NC_000913	1466604	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.2	fisher_strand_p_value=1	frequency=2.041e-01	ks_quality_p_value=1	major_base=G	major_cov=25/14	major_frequency=7.959e-01	minor_base=A	minor_cov=7/3	new_cov=7/3	polymorphism_frequency=2.041e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=25/14	total_cov=32/17
RA	105	.	NC_000913	1470627	0	C	A	bias_e_value=7.55436e-11	bias_p_value=1.62751e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=340.1	fisher_strand_p_value=3.74762e-19	frequency=2.733e-01	ks_quality_p_value=1	major_base=C	major_cov=32/85	major_frequency=7.267e-01	minor_base=A	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=2.733e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=32/85	total_cov=76/85
RA	106	.	NC_000913	1502770	0	T	C	bias_e_value=0.138836	bias_p_value=2.99109e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.6	fisher_strand_p_value=1.3985e-09	frequency=3.168e-01	ks_quality_p_value=1	major_base=T	major_cov=40/29	major_frequency=6.832e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.168e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=40/29	total_cov=40/61
RA	107	.	NC_000913	1812509	0	G	T	bias_e_value=1.01965e-08	bias_p_value=2.19674e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.9	fisher_strand_p_value=5.72071e-17	frequency=2.847e-01	ks_quality_p_value=1	major_base=G	major_cov=73/30	major_frequency=7.153e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.847e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=73/30	total_cov=73/71
RA	108	.	NC_000913	1951203	0	A	T	bias_e_value=549944	bias_p_value=0.11848	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.4	fisher_strand_p_value=0.0253417	frequency=2.100e-01	ks_quality_p_value=1	major_base=A	major_cov=37/42	major_frequency=7.900e-01	minor_base=T	minor_cov=4/17	new_cov=4/17	polymorphism_frequency=2.100e-01	polymorphism_score=75.5	prediction=polymorphism	ref_cov=37/42	total_cov=41/59
RA	109	.	NC_000913	1951320	0	G	A	bias_e_value=1600010	bias_p_value=0.344708	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.8	fisher_strand_p_value=0.106956	frequency=2.688e-01	ks_quality_p_value=0.994437	major_base=G	major_cov=35/33	major_frequency=7.312e-01	minor_base=A	minor_cov=8/17	new_cov=8/17	polymorphism_frequency=2.688e-01	polymorphism_score=68.3	prediction=polymorphism	ref_cov=35/33	total_cov=43/50
RA	110	.	NC_000913	1951332	0	T	C	bias_e_value=1435360	bias_p_value=0.309234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=0.102519	frequency=2.526e-01	ks_quality_p_value=0.888113	major_base=T	major_cov=38/33	major_frequency=7.474e-01	minor_base=C	minor_cov=8/16	new_cov=8/16	polymorphism_frequency=2.526e-01	polymorphism_score=64.7	prediction=polymorphism	ref_cov=38/33	total_cov=46/50
RA	111	.	NC_000913	1951335	0	C	T	bias_e_value=1521710	bias_p_value=0.327839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.0	fisher_strand_p_value=0.0989516	frequency=2.449e-01	ks_quality_p_value=1	major_base=C	major_cov=41/33	major_frequency=7.551e-01	minor_base=T	minor_cov=8/16	new_cov=8/16	polymorphism_frequency=2.449e-01	polymorphism_score=69.5	prediction=polymorphism	ref_cov=41/33	total_cov=49/50
RA	112	.	NC_000913	1951338	0	C	T	bias_e_value=720893	bias_p_value=0.15531	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.3	fisher_strand_p_value=0.0597205	frequency=2.424e-01	ks_quality_p_value=0.600981	major_base=C	major_cov=43/32	major_frequency=7.576e-01	minor_base=T	minor_cov=8/16	new_cov=8/16	polymorphism_frequency=2.424e-01	polymorphism_score=72.3	prediction=polymorphism	ref_cov=43/32	total_cov=51/49
RA	113	.	NC_000913	1951386	0	C	T	bias_e_value=32819.6	bias_p_value=0.00707067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.8	fisher_strand_p_value=0.00221688	frequency=2.069e-01	ks_quality_p_value=0.396913	major_base=C	major_cov=60/32	major_frequency=7.931e-01	minor_base=T	minor_cov=7/17	new_cov=7/17	polymorphism_frequency=2.069e-01	polymorphism_score=67.5	prediction=polymorphism	ref_cov=60/32	total_cov=69/49
RA	114	.	NC_000913	1951387	0	A	C	bias_e_value=154402	bias_p_value=0.0332645	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.1	fisher_strand_p_value=0.0053367	frequency=2.137e-01	ks_quality_p_value=1	major_base=A	major_cov=60/32	major_frequency=7.863e-01	minor_base=C	minor_cov=8/17	new_cov=8/17	polymorphism_frequency=2.137e-01	polymorphism_score=67.1	prediction=polymorphism	ref_cov=60/32	total_cov=68/49
RA	115	.	NC_000913	2173363	0	C	.	bias_e_value=4641510	bias_p_value=0.99997	consensus_score=387.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992314	major_base=.	major_cov=47/33	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=47/33	polymorphism_frequency=9.877e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=48/33
RA	116	.	NC_000913	2173364	0	C	.	bias_e_value=4637200	bias_p_value=0.999041	consensus_score=387.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.956529	major_base=.	major_cov=47/33	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=47/33	polymorphism_frequency=9.877e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/0	total_cov=48/33
RA	117	.	NC_000913	2288418	0	G	T	bias_e_value=0.00309918	bias_p_value=6.67689e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.2	fisher_strand_p_value=2.6328e-11	frequency=3.256e-01	ks_quality_p_value=1	major_base=G	major_cov=52/35	major_frequency=6.744e-01	minor_base=T	minor_cov=1/41	new_cov=1/41	polymorphism_frequency=3.256e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=52/35	total_cov=53/76
RA	118	.	NC_000913	2466633	0	C	A	bias_e_value=9.33102	bias_p_value=2.01028e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.6	fisher_strand_p_value=1.18619e-07	frequency=2.617e-01	ks_quality_p_value=1	major_base=C	major_cov=38/41	major_frequency=7.383e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.617e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=38/41	total_cov=66/41
RA	119	.	NC_000913	2472817	0	C	A	bias_e_value=3.07857	bias_p_value=6.63249e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.2	fisher_strand_p_value=3.65965e-08	frequency=2.353e-01	ks_quality_p_value=1	major_base=C	major_cov=22/43	major_frequency=7.647e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.353e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=22/43	total_cov=42/44
RA	120	.	NC_000913	2477265	0	A	C	bias_e_value=6.7898e-08	bias_p_value=1.4628e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.9	fisher_strand_p_value=4.01296e-16	frequency=2.809e-01	ks_quality_p_value=1	major_base=A	major_cov=7/57	major_frequency=7.191e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=7/57	total_cov=32/57
RA	121	.	NC_000913	2586667	0	G	T	bias_e_value=11.8379	bias_p_value=2.55035e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.4	fisher_strand_p_value=1.52768e-07	frequency=2.604e-01	ks_quality_p_value=1	major_base=G	major_cov=39/32	major_frequency=7.396e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.604e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=39/32	total_cov=39/57
RA	122	.	NC_000913	2639066	0	G	T	bias_e_value=1673.32	bias_p_value=0.000360501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=3.174e-05	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=30/45	major_frequency=7.500e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.500e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=30/45	total_cov=30/70
RA	123	.	NC_000913	2767444	0	C	A	bias_e_value=0.011599	bias_p_value=2.49889e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.6	fisher_strand_p_value=1.04186e-10	frequency=2.821e-01	ks_quality_p_value=1	major_base=C	major_cov=13/43	major_frequency=7.179e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.821e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=13/43	total_cov=35/43
RA	124	.	NC_000913	2856087	0	G	T	bias_e_value=377.191	bias_p_value=8.12622e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.5	fisher_strand_p_value=6.25992e-06	frequency=2.941e-01	ks_quality_p_value=1	major_base=G	major_cov=28/32	major_frequency=7.059e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.941e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=28/32	total_cov=28/57
RA	125	.	NC_000913	2876715	0	G	T	bias_e_value=1.8156	bias_p_value=3.91153e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.2	fisher_strand_p_value=2.09378e-08	frequency=2.903e-01	ks_quality_p_value=1	major_base=G	major_cov=38/28	major_frequency=7.097e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.903e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=38/28	total_cov=38/55
RA	126	.	NC_000913	2990480	0	C	A	bias_e_value=13.1319	bias_p_value=2.82913e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.6	fisher_strand_p_value=1.70594e-07	frequency=3.519e-01	ks_quality_p_value=1	major_base=C	major_cov=40/30	major_frequency=6.481e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.519e-01	polymorphism_score=24.0	prediction=polymorphism	ref_cov=40/30	total_cov=78/30
RA	127	.	NC_000913	3054886	0	G	T	bias_e_value=0.0462236	bias_p_value=9.95843e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.9	fisher_strand_p_value=4.41809e-10	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=21/42	major_frequency=7.000e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.000e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=21/42	total_cov=48/42
RA	128	.	NC_000913	3054894	0	G	T	bias_e_value=16278.1	bias_p_value=0.00350696	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.4	fisher_strand_p_value=0.000397105	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=28/39	major_frequency=7.528e-01	minor_base=T	minor_cov=19/3	new_cov=19/3	polymorphism_frequency=2.472e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=28/39	total_cov=47/42
RA	129	.	NC_000913	3226224	0	G	T	bias_e_value=0.388766	bias_p_value=8.3756e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.8	fisher_strand_p_value=4.12464e-09	frequency=3.009e-01	ks_quality_p_value=1	major_base=G	major_cov=42/37	major_frequency=6.991e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.009e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=42/37	total_cov=43/71
RA	130	.	NC_000913	3269943	0	G	T	bias_e_value=141759	bias_p_value=0.0305407	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.7	fisher_strand_p_value=0.00482114	frequency=2.308e-01	ks_quality_p_value=1	major_base=G	major_cov=35/35	major_frequency=7.692e-01	minor_base=T	minor_cov=18/3	new_cov=18/3	polymorphism_frequency=2.308e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=35/35	total_cov=54/39
RA	131	.	NC_000913	3433680	0	C	A	bias_e_value=8.89318	bias_p_value=1.91595e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.7	fisher_strand_p_value=1.12714e-07	frequency=2.642e-01	ks_quality_p_value=1	major_base=C	major_cov=37/41	major_frequency=7.358e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.642e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=37/41	total_cov=65/41
RA	132	.	NC_000913	3560455	1	.	G	consensus_score=296.3	frequency=1	major_base=G	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	133	.	NC_000913	3602706	0	C	A	bias_e_value=1011890	bias_p_value=0.218002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.3	fisher_strand_p_value=0.0562038	frequency=2.241e-01	ks_quality_p_value=1	major_base=C	major_cov=21/24	major_frequency=7.759e-01	minor_base=A	minor_cov=2/11	new_cov=2/11	polymorphism_frequency=2.241e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=21/24	total_cov=23/35
RA	134	.	NC_000913	3722230	0	G	T	bias_e_value=9.75799	bias_p_value=2.10227e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.9	fisher_strand_p_value=1.24396e-07	frequency=2.324e-01	ks_quality_p_value=1	major_base=G	major_cov=55/54	major_frequency=7.676e-01	minor_base=T	minor_cov=1/32	new_cov=1/32	polymorphism_frequency=2.324e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=55/54	total_cov=56/86
RA	135	.	NC_000913	3911533	0	C	A	bias_e_value=0.000112232	bias_p_value=2.41794e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.9	fisher_strand_p_value=8.39383e-13	frequency=3.025e-01	ks_quality_p_value=1	major_base=C	major_cov=29/54	major_frequency=6.975e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.025e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=29/54	total_cov=65/54
RA	136	.	NC_000913	4296268	0	T	C	bias_e_value=4494580	bias_p_value=0.968316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.7	fisher_strand_p_value=0.759068	frequency=3.778e-01	ks_quality_p_value=1	major_base=T	major_cov=18/10	major_frequency=6.222e-01	minor_base=C	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=3.778e-01	polymorphism_score=32.2	prediction=polymorphism	ref_cov=18/10	total_cov=28/18
RA	137	.	NC_000913	4296380	1	.	C	bias_e_value=4640400	bias_p_value=0.999731	consensus_score=192.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.976894	major_base=C	major_cov=32/23	major_frequency=9.821e-01	minor_base=A	minor_cov=1/0	new_cov=32/23	polymorphism_frequency=9.821e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=34/23
RA	138	.	NC_000913	4296380	2	.	G	bias_e_value=3602810	bias_p_value=0.776191	consensus_score=195.2	fisher_strand_p_value=0.410714	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/22	major_frequency=9.821e-01	minor_base=T	minor_cov=0/1	new_cov=33/22	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/23
RA	139	.	NC_000913	4360965	0	C	A	bias_e_value=6.60556e-05	bias_p_value=1.42311e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.8	fisher_strand_p_value=4.84791e-13	frequency=2.632e-01	ks_quality_p_value=1	major_base=C	major_cov=24/60	major_frequency=7.368e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.632e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=24/60	total_cov=54/60
MC	140	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=106	right_inside_cov=2	right_outside_cov=108
MC	141	.	NC_000913	354596	354671	0	0	left_inside_cov=0	left_outside_cov=83	right_inside_cov=26	right_outside_cov=28
MC	142	.	NC_000913	361657	362203	0	0	left_inside_cov=0	left_outside_cov=99	right_inside_cov=0	right_outside_cov=91
MC	143	.	NC_000913	1299499	1300697	1197	0	left_inside_cov=0	left_outside_cov=120	right_inside_cov=0	right_outside_cov=121
MC	144	.	NC_000913	1978503	1979278	0	0	left_inside_cov=0	left_outside_cov=123	right_inside_cov=2	right_outside_cov=123
MC	145	.	NC_000913	3423839	3424457	393	218	left_inside_cov=26	left_outside_cov=29	right_inside_cov=25	right_outside_cov=28
MC	146	.	NC_000913	3883257	3883558	0	0	left_inside_cov=27	left_outside_cov=29	right_inside_cov=27	right_outside_cov=28
JC	147	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=72	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=286	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=149	max_min_right_minus=149	max_min_right_plus=134	max_pos_hash_score=588	max_right=286	max_right_minus=278	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.50	new_junction_read_count=134	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=132
JC	148	.	NC_000913	19796	1	NC_000913	361656	-1	0	alignment_overlap=1	coverage_minus=50	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__19796__1__NC_000913__361657__-1__1____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=275	max_min_left=148	max_min_left_minus=139	max_min_left_plus=148	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=586	max_right=297	max_right_minus=297	max_right_plus=285	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	149	.	NC_000913	71265	-1	NC_000913	354595	-1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=6.949e-01	junction_possible_overlap_registers=294	key=NC_000913__71265__-1__NC_000913__354595__-1__0____300__300__0__0	max_left=299	max_left_minus=299	max_left_plus=296	max_min_left=147	max_min_left_minus=147	max_min_left_plus=143	max_min_right=131	max_min_right_minus=131	max_min_right_plus=104	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=291	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=82	polymorphism_frequency=6.949e-01	pos_hash_score=53	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=78
JC	150	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=42	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=285	max_left_minus=285	max_left_plus=282	max_min_left=137	max_min_left_minus=86	max_min_left_plus=137	max_min_right=144	max_min_right_minus=142	max_min_right_plus=144	max_pos_hash_score=572	max_right=279	max_right_minus=279	max_right_plus=273	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.22	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	151	.	NC_000913	258675	-1	NC_000913	362204	1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__362204__1__0____300__300__1__0	max_left=291	max_left_minus=289	max_left_plus=291	max_min_left=148	max_min_left_minus=148	max_min_left_plus=146	max_min_right=148	max_min_right_minus=148	max_min_right_plus=147	max_pos_hash_score=588	max_right=296	max_right_minus=271	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	152	.	NC_000913	696567	-1	NC_000913	697083	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.335e-02	junction_possible_overlap_registers=282	key=NC_000913__696567__-1__NC_000913__697071__1__12____300__300__0__0	max_left=41	max_left_minus=41	max_left_plus=41	max_min_left=41	max_min_left_minus=41	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=564	max_right=257	max_right_minus=78	max_right_plus=257	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.335e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	153	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=8	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.660e-01	junction_possible_overlap_registers=216	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=155	max_left_minus=154	max_left_plus=155	max_min_left=65	max_min_left_minus=65	max_min_left_plus=65	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=432	max_right=106	max_right_minus=106	max_right_plus=106	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.18	new_junction_read_count=12	polymorphism_frequency=1.660e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=12
JC	154	.	NC_000913	781446	-1	NC_000913	781655	1	0	alignment_overlap=78	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.561e-02	junction_possible_overlap_registers=216	key=NC_000913__781446__-1__NC_000913__781577__1__78____300__300__0__0	max_left=113	max_left_minus=113	max_left_plus=74	max_min_left=74	max_min_left_minus=66	max_min_left_plus=74	max_min_right=109	max_min_right_minus=109	max_min_right_plus=0	max_pos_hash_score=432	max_right=220	max_right_minus=156	max_right_plus=220	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=9.561e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	155	.	NC_000913	781577	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.256e-01	junction_possible_overlap_registers=290	key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=243	max_left_minus=243	max_left_plus=126	max_min_left=121	max_min_left_minus=121	max_min_left_plus=47	max_min_right=139	max_min_right_minus=139	max_min_right_plus=45	max_pos_hash_score=580	max_right=252	max_right_minus=174	max_right_plus=252	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.256e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=GAAG
JC	156	.	NC_000913	1149703	-1	NC_000913	1150028	1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.341e-02	junction_possible_overlap_registers=281	key=NC_000913__1149703__-1__NC_000913__1150015__1__13____300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=199	max_min_left=81	max_min_left_minus=81	max_min_left_plus=81	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=562	max_right=147	max_right_minus=147	max_right_plus=147	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.341e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=13	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=6
JC	157	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=35	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=7.425e-01	junction_possible_overlap_registers=278	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=276	max_left_minus=276	max_left_plus=217	max_min_left=139	max_min_left_minus=111	max_min_left_plus=139	max_min_right=136	max_min_right_minus=136	max_min_right_plus=135	max_pos_hash_score=556	max_right=280	max_right_minus=275	max_right_plus=280	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=73	polymorphism_frequency=7.425e-01	pos_hash_score=53	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.28	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=73
JC	158	.	NC_000913	1207798	-1	NC_000913	1209608	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.180e-01	junction_possible_overlap_registers=293	key=NC_000913__1207798__-1__NC_000913__1209608__-1__-1__T__300__300__0__0	max_left=280	max_left_minus=0	max_left_plus=280	max_min_left=133	max_min_left_minus=0	max_min_left_plus=133	max_min_right=19	max_min_right_minus=0	max_min_right_plus=19	max_pos_hash_score=586	max_right=198	max_right_minus=0	max_right_plus=198	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.180e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.32	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.35	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=T
JC	159	.	NC_000913	1207800	1	NC_000913	1209610	1	-1	alignment_overlap=-1	coverage_minus=13	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=3.103e-01	junction_possible_overlap_registers=293	key=NC_000913__1207800__1__NC_000913__1209610__1__-1__A__300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=0	max_min_left=115	max_min_left_minus=115	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=586	max_right=283	max_right_minus=283	max_right_plus=0	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=13	polymorphism_frequency=3.103e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.32	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=A
JC	160	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=35	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=6.807e-01	junction_possible_overlap_registers=278	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=276	max_min_left=139	max_min_left_minus=139	max_min_left_plus=135	max_min_right=140	max_min_right_minus=140	max_min_right_plus=123	max_pos_hash_score=556	max_right=282	max_right_minus=282	max_right_plus=274	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.67	new_junction_read_count=57	polymorphism_frequency=6.807e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.31	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=57
JC	161	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=7	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.871e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=253	max_left_minus=253	max_left_plus=231	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=61	max_min_right_minus=61	max_min_right_plus=34	max_pos_hash_score=548	max_right=153	max_right_minus=61	max_right_plus=153	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.13	new_junction_read_count=11	polymorphism_frequency=1.871e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=10
JC	162	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.284e-01	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=136	max_min_left=127	max_min_left_minus=0	max_min_left_plus=127	max_min_right=49	max_min_right_minus=16	max_min_right_plus=49	max_pos_hash_score=548	max_right=153	max_right_minus=16	max_right_plus=153	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=1.284e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=7
JC	163	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=52	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=289	max_left_minus=285	max_left_plus=289	max_min_left=146	max_min_left_minus=127	max_min_left_plus=146	max_min_right=142	max_min_right_minus=115	max_min_right_plus=142	max_pos_hash_score=580	max_right=288	max_right_minus=281	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.36	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	164	.	NC_000913	1397238	-1	NC_000913	1995623	-1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1995623__-1__0____300__300__1__0	max_left=294	max_left_minus=293	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=136	max_min_right=147	max_min_right_minus=144	max_min_right_plus=147	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.44	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=125
JC	165	.	NC_000913	1777052	-1	NC_000913	1777566	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.243e-02	junction_possible_overlap_registers=285	key=NC_000913__1777052__-1__NC_000913__1777557__1__9____300__300__0__0	max_left=44	max_left_minus=44	max_left_plus=44	max_min_left=44	max_min_left_minus=44	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=62	max_right_minus=62	max_right_plus=62	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.243e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=4
JC	166	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=66	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=286	max_left_minus=275	max_left_plus=286	max_min_left=144	max_min_left_minus=132	max_min_left_plus=144	max_min_right=138	max_min_right_minus=138	max_min_right_plus=135	max_pos_hash_score=572	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.38	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	167	.	NC_000913	1995620	1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1995620__1__NC_000913__2290113__-1__0____300__300__0__1	max_left=296	max_left_minus=294	max_left_plus=296	max_min_left=149	max_min_left_minus=149	max_min_left_plus=143	max_min_right=146	max_min_right_minus=124	max_min_right_plus=146	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.29	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=115
JC	168	.	NC_000913	2036340	-1	NC_000913	2036754	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.170e-02	junction_possible_overlap_registers=283	key=NC_000913__2036340__-1__NC_000913__2036743__1__11____300__300__0__0	max_left=49	max_left_minus=49	max_left_plus=49	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=566	max_right=160	max_right_minus=75	max_right_plus=160	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.170e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	169	.	NC_000913	2198532	-1	NC_000913	2199042	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.764e-02	junction_possible_overlap_registers=287	key=NC_000913__2198532__-1__NC_000913__2199035__1__7____300__300__0__0	max_left=149	max_left_minus=149	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=30	max_min_right_minus=30	max_min_right_plus=30	max_pos_hash_score=574	max_right=30	max_right_minus=30	max_right_plus=30	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.764e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=4
JC	170	.	NC_000913	2303661	-1	NC_000913	2304140	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.369e-02	junction_possible_overlap_registers=284	key=NC_000913__2303661__-1__NC_000913__2304130__1__10____300__300__0__0	max_left=45	max_left_minus=45	max_left_plus=45	max_min_left=45	max_min_left_minus=45	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=568	max_right=81	max_right_minus=81	max_right_plus=81	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.369e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=5
JC	171	.	NC_000913	2357664	-1	NC_000913	2357848	1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.633e-02	junction_possible_overlap_registers=283	key=NC_000913__2357664__-1__NC_000913__2357837__1__11____300__300__0__0	max_left=236	max_left_minus=236	max_left_plus=160	max_min_left=116	max_min_left_minus=94	max_min_left_plus=116	max_min_right=129	max_min_right_minus=119	max_min_right_plus=129	max_pos_hash_score=566	max_right=263	max_right_minus=263	max_right_plus=263	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=6.633e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.43	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=8
JC	172	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.011e-02	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=258	max_left_minus=207	max_left_plus=258	max_min_left=82	max_min_left_minus=37	max_min_left_plus=82	max_min_right=129	max_min_right_minus=129	max_min_right_plus=2	max_pos_hash_score=508	max_right=256	max_right_minus=256	max_right_plus=198	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=9.011e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=10
JC	173	.	NC_000913	2521006	-1	NC_000913	2521467	1	-62	alignment_overlap=-62	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.537e-02	junction_possible_overlap_registers=232	key=NC_000913__2521006__-1__NC_000913__2521467__1__-62__CTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGA__300__300__0__0	max_left=100	max_left_minus=100	max_left_plus=85	max_min_left=100	max_min_left_minus=100	max_min_left_plus=85	max_min_right=9	max_min_right_minus=0	max_min_right_plus=9	max_pos_hash_score=464	max_right=151	max_right_minus=137	max_right_plus=151	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.537e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGA
JC	174	.	NC_000913	2603199	-1	NC_000913	2603490	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.063e-02	junction_possible_overlap_registers=283	key=NC_000913__2603199__-1__NC_000913__2603479__1__11____300__300__0__0	max_left=148	max_left_minus=148	max_left_plus=124	max_min_left=124	max_min_left_minus=0	max_min_left_plus=124	max_min_right=141	max_min_right_minus=141	max_min_right_plus=0	max_pos_hash_score=566	max_right=165	max_right_minus=141	max_right_plus=165	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.063e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	175	.	NC_000913	2817942	-1	NC_000913	2818492	1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.661e-02	junction_possible_overlap_registers=274	key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0	max_left=277	max_left_minus=277	max_left_plus=6	max_min_left=90	max_min_left_minus=90	max_min_left_plus=6	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=548	max_right=205	max_right_minus=205	max_right_plus=170	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.661e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=6
JC	176	.	NC_000913	3105438	-1	NC_000913	3105787	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.576e-02	junction_possible_overlap_registers=283	key=NC_000913__3105438__-1__NC_000913__3105776__1__11____300__300__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=91	max_min_right_minus=91	max_min_right_plus=91	max_pos_hash_score=566	max_right=91	max_right_minus=91	max_right_plus=91	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.576e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	177	.	NC_000913	3469040	-1	NC_000913	3469344	1	0	alignment_overlap=20	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.109e-01	junction_possible_overlap_registers=274	key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=149	max_min_left=126	max_min_left_minus=34	max_min_left_plus=126	max_min_right=113	max_min_right_minus=113	max_min_right_plus=67	max_pos_hash_score=548	max_right=254	max_right_minus=254	max_right_plus=254	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.109e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=9
JC	178	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=9	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.640e-01	junction_possible_overlap_registers=236	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=232	max_left_minus=232	max_left_plus=222	max_min_left=107	max_min_left_minus=107	max_min_left_plus=97	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=472	max_right=240	max_right_minus=224	max_right_plus=240	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.24	new_junction_read_count=17	polymorphism_frequency=1.640e-01	pos_hash_score=17	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=58	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=17
JC	179	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.267e-01	junction_possible_overlap_registers=253	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=215	max_left_minus=215	max_left_plus=203	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=107	max_min_right_minus=107	max_min_right_plus=106	max_pos_hash_score=506	max_right=246	max_right_minus=107	max_right_plus=246	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.12	new_junction_read_count=9	polymorphism_frequency=1.267e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=41	side_1_possible_overlap_registers=294	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=253	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=9
JC	180	.	NC_000913	4295870	-1	NC_000913	4296434	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.720e-02	junction_possible_overlap_registers=255	key=NC_000913__4295870__-1__NC_000913__4296395__1__39____300__300__0__0	max_left=88	max_left_minus=88	max_left_plus=88	max_min_left=88	max_min_left_minus=88	max_min_left_plus=88	max_min_right=22	max_min_right_minus=22	max_min_right_plus=0	max_pos_hash_score=510	max_right=110	max_right_minus=110	max_right_plus=110	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.720e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=3
JC	181	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.638e-02	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=268	max_left_minus=241	max_left_plus=268	max_min_left=114	max_min_left_minus=13	max_min_left_plus=114	max_min_right=133	max_min_right_minus=133	max_min_right_plus=40	max_pos_hash_score=570	max_right=278	max_right_minus=278	max_right_plus=177	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=4.638e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.57	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=140	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=6
JC	182	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.234e-02	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=282	max_left_minus=275	max_left_plus=282	max_min_left=141	max_min_left_minus=141	max_min_left_plus=101	max_min_right=129	max_min_right_minus=14	max_min_right_plus=129	max_pos_hash_score=570	max_right=262	max_right_minus=262	max_right_plus=187	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=5.234e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.66	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=148	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=7
UN	183	.	NC_000913	15654	15657
UN	184	.	NC_000913	15660	15660
UN	185	.	NC_000913	15662	16449
UN	186	.	NC_000913	16451	16453
UN	187	.	NC_000913	16455	16458
UN	188	.	NC_000913	16460	16467
UN	189	.	NC_000913	20058	20058
UN	190	.	NC_000913	20060	20291
UN	191	.	NC_000913	20293	20294
UN	192	.	NC_000913	70289	70289
UN	193	.	NC_000913	70434	70434
UN	194	.	NC_000913	70581	70581
UN	195	.	NC_000913	71175	71175
UN	196	.	NC_000913	71214	71214
UN	197	.	NC_000913	224016	224498
UN	198	.	NC_000913	225172	225174
UN	199	.	NC_000913	225176	225300
UN	200	.	NC_000913	225307	225307
UN	201	.	NC_000913	225314	225315
UN	202	.	NC_000913	227262	227262
UN	203	.	NC_000913	227266	227266
UN	204	.	NC_000913	227271	228436
UN	205	.	NC_000913	228441	228441
UN	206	.	NC_000913	257908	258683
UN	207	.	NC_000913	270815	271000
UN	208	.	NC_000913	271004	271004
UN	209	.	NC_000913	274248	274863
UN	210	.	NC_000913	279441	279670
UN	211	.	NC_000913	290916	291144
UN	212	.	NC_000913	291149	291149
UN	213	.	NC_000913	315509	315509
UN	214	.	NC_000913	315515	316219
UN	215	.	NC_000913	354596	354620
UN	216	.	NC_000913	361657	362203
UN	217	.	NC_000913	381539	381539
UN	218	.	NC_000913	381549	382315
UN	219	.	NC_000913	382321	382321
UN	220	.	NC_000913	391979	391979
UN	221	.	NC_000913	391984	392688
UN	222	.	NC_000913	526092	526092
UN	223	.	NC_000913	526094	526094
UN	224	.	NC_000913	526100	526100
UN	225	.	NC_000913	526103	526437
UN	226	.	NC_000913	526439	526439
UN	227	.	NC_000913	526442	526442
UN	228	.	NC_000913	567034	567034
UN	229	.	NC_000913	567042	567777
UN	230	.	NC_000913	574862	574862
UN	231	.	NC_000913	574868	575510
UN	232	.	NC_000913	575513	575514
UN	233	.	NC_000913	581337	581337
UN	234	.	NC_000913	608271	608271
UN	235	.	NC_000913	608274	608275
UN	236	.	NC_000913	608277	608277
UN	237	.	NC_000913	608280	608280
UN	238	.	NC_000913	608285	608285
UN	239	.	NC_000913	608288	609073
UN	240	.	NC_000913	609076	609076
UN	241	.	NC_000913	609080	609080
UN	242	.	NC_000913	688121	688121
UN	243	.	NC_000913	688129	688774
UN	244	.	NC_000913	1094527	1095219
UN	245	.	NC_000913	1095221	1095222
UN	246	.	NC_000913	1095224	1095224
UN	247	.	NC_000913	1299499	1300697
UN	248	.	NC_000913	1310568	1310571
UN	249	.	NC_000913	1310574	1310577
UN	250	.	NC_000913	1396324	1396966
UN	251	.	NC_000913	1468170	1468170
UN	252	.	NC_000913	1468176	1468177
UN	253	.	NC_000913	1468179	1468951
UN	254	.	NC_000913	1469561	1470234
UN	255	.	NC_000913	1528521	1528521
UN	256	.	NC_000913	1528546	1528546
UN	257	.	NC_000913	1528550	1528902
UN	258	.	NC_000913	1528904	1528905
UN	259	.	NC_000913	1651113	1651278
UN	260	.	NC_000913	1978503	1979278
UN	261	.	NC_000913	2067008	2067062
UN	262	.	NC_000913	2069196	2069993
UN	263	.	NC_000913	2070004	2070004
UN	264	.	NC_000913	2102009	2102009
UN	265	.	NC_000913	2102011	2102012
UN	266	.	NC_000913	2102015	2102018
UN	267	.	NC_000913	2102021	2102663
UN	268	.	NC_000913	2170449	2171164
UN	269	.	NC_000913	2289198	2289827
UN	270	.	NC_000913	2514527	2515339
UN	271	.	NC_000913	2726328	2729005
UN	272	.	NC_000913	2729815	2730695
UN	273	.	NC_000913	2730698	2730698
UN	274	.	NC_000913	2996616	2997402
UN	275	.	NC_000913	2997406	2997406
UN	276	.	NC_000913	3130422	3131067
UN	277	.	NC_000913	3186349	3186349
UN	278	.	NC_000913	3186359	3187143
UN	279	.	NC_000913	3187154	3187154
UN	280	.	NC_000913	3365826	3366470
UN	281	.	NC_000913	3423935	3424373
UN	282	.	NC_000913	3424378	3424378
UN	283	.	NC_000913	3424392	3424392
UN	284	.	NC_000913	3424896	3426614
UN	285	.	NC_000913	3427208	3427208
UN	286	.	NC_000913	3427213	3427213
UN	287	.	NC_000913	3427216	3428279
UN	288	.	NC_000913	3428282	3428282
UN	289	.	NC_000913	3583705	3583934
UN	290	.	NC_000913	3619528	3619528
UN	291	.	NC_000913	3619530	3620827
UN	292	.	NC_000913	3621324	3622057
UN	293	.	NC_000913	3622060	3622060
UN	294	.	NC_000913	3622064	3622066
UN	295	.	NC_000913	3652306	3652953
UN	296	.	NC_000913	3762522	3762524
UN	297	.	NC_000913	3762527	3762527
UN	298	.	NC_000913	3762530	3763835
UN	299	.	NC_000913	3763837	3763839
UN	300	.	NC_000913	3763843	3763843
UN	301	.	NC_000913	3763845	3763845
UN	302	.	NC_000913	3763847	3763848
UN	303	.	NC_000913	3763855	3763855
UN	304	.	NC_000913	3764344	3765028
UN	305	.	NC_000913	3765031	3765031
UN	306	.	NC_000913	3765040	3765040
UN	307	.	NC_000913	3765042	3765042
UN	308	.	NC_000913	3883368	3883368
UN	309	.	NC_000913	3883396	3883397
UN	310	.	NC_000913	3883403	3883403
UN	311	.	NC_000913	3883406	3883493
UN	312	.	NC_000913	3883495	3883495
UN	313	.	NC_000913	3942319	3943141
UN	314	.	NC_000913	3944339	3945296
UN	315	.	NC_000913	4035440	4035440
UN	316	.	NC_000913	4035443	4035461
UN	317	.	NC_000913	4035995	4035995
UN	318	.	NC_000913	4036012	4036853
UN	319	.	NC_000913	4038106	4038409
UN	320	.	NC_000913	4038412	4038413
UN	321	.	NC_000913	4038964	4038964
UN	322	.	NC_000913	4038980	4038980
UN	323	.	NC_000913	4038989	4039108
UN	324	.	NC_000913	4039136	4039136
UN	325	.	NC_000913	4039656	4039656
UN	326	.	NC_000913	4039658	4039658
UN	327	.	NC_000913	4039661	4039661
UN	328	.	NC_000913	4039663	4040321
UN	329	.	NC_000913	4166573	4166605
UN	330	.	NC_000913	4166906	4167941
UN	331	.	NC_000913	4167952	4167952
UN	332	.	NC_000913	4168848	4171368
UN	333	.	NC_000913	4176829	4176830
UN	334	.	NC_000913	4176834	4176837
UN	335	.	NC_000913	4208395	4209475
UN	336	.	NC_000913	4209478	4209479
UN	337	.	NC_000913	4210289	4210289
UN	338	.	NC_000913	4210300	4210300
UN	339	.	NC_000913	4210303	4212850
UN	340	.	NC_000913	4498470	4499233
UN	341	.	NC_000913	4507741	4508416