breseq  version 0.39.0   mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]
RA	803,662	C→A	L54I (CTT→ATT)	ybhJ →	putative hydratase YbhJ
MC JC	1,299,499	Δ1,199 bp		insH21	insH21
RA	1,905,761	G→A	G25D (GGT→GAT)	mntP →	Mn(2(+)) exporter
MC JC	1,978,503	Δ776 bp		insB5–insA5	insB5, insA5
RA	2,173,363	Δ2 bp	intergenic (‑490/+918)	gatD ← / ← gatB	galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA	3,560,455	+G	intergenic (+589/+167)	rtcR → / ← glpG	DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA	4,296,381	+GC	intergenic (+587/+55)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423761–3424233	3424502–3424239	7–742	29 [27]	[26] 28	[rrfD]–[rrlD]	[rrfD],[rrlD]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	23 (0.260)	65 (0.770)	48/554	0.4	63.8%	coding (290/630 nt)	ycfK	protein StfP
	?	NC_000913	1209619 =	52 (0.610)					intergenic (‑500/‑66)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
*	?	NC_000913	= 1207805	24 (0.270)	49 (0.580)	28/554	1.7	56.8%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	52 (0.610)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase