mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 30 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,551,667 | 1 | . | G | 42.9% | ‑0.1 / 54.9 | 29 | coding (807/2394 nt) | malP | maltodextrin phosphorylase |
| * | NC_000913 | 2,767,445 | 0 | C | A | 39.5% | 123.4 / 18.3 | 76 | intergenic (+90/‑265) | rnlB/yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| * | NC_000913 | 1,427,992 | 0 | G | T | 39.1% | 93.1 / 10.4 | 87 | P245P (CCC→CCA) | insH5 | IS5 family transposase and trans‑activator |
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.5% | 9.2 / 20.0 | 24 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,767,444 | 0 | C | A | 36.8% | 137.1 / 10.1 | 76 | intergenic (+89/‑266) | rnlB/yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| * | NC_000913 | 2,472,817 | 0 | C | A | 36.5% | 83.5 / 11.8 | 74 | G22V (GGA→GTA) | yfdN | uncharacterized protein YfdN |
| * | NC_000913 | 1,351,463 | 0 | C | A | 35.1% | 74.5 / 15.7 | 77 | E100* (GAG→TAG) | ycjD | DUF559 domain‑containing protein YcjD |
| * | NC_000913 | 847,955 | 0 | G | A | 33.9% | 136.8 / 51.9 | 115 | A17V (GCG→GTG) | glnH | L‑glutamine ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,990,480 | 0 | C | A | 32.3% | 175.2 / 15.5 | 124 | intergenic (‑120/‑788) | yqeK/ygeG | protein YqeK/TPR repeat‑containing putative chaperone YgeG |
| * | NC_000913 | 3,911,533 | 0 | C | A | 31.2% | 170.8 / 10.9 | 93 | intergenic (‑8/+306) | pstS/glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| * | NC_000913 | 3,741,871 | 0 | G | T | 30.9% | 169.4 / 10.1 | 94 | S221Y (TCC→TAC) | plaR | DNA‑binding transcriptional repressor PlaR |
| * | NC_000913 | 1,812,509 | 0 | G | T | 30.6% | 285.0 / 19.7 | 144 | L208L (CTC→CTA) | ydjO | protein YdjO |
| * | NC_000913 | 1,502,770 | 0 | T | C | 28.0% | 152.1 / 22.2 | 93 | I105T (ATA→ACA) | ydcL | DUF3313 domain‑containing lipoprotein YdcL |
| * | NC_000913 | 834,674 | 0 | C | A | 27.1% | 186.8 / 11.8 | 96 | L535L (CTC→CTA) | dinG | ATP‑dependent DNA helicase DinG |
| * | NC_000913 | 3,054,886 | 0 | G | T | 27.0% | 143.2 / 12.7 | 74 | Q187K (CAA→AAA) | ygfB | PF03695 family protein YgfB |
| * | NC_000913 | 141,849 | 0 | C | A | 26.4% | 194.8 / 13.2 | 107 | P140Q (CCG→CAG) | hpt | hypoxanthine phosphoribosyltransferase |
| * | NC_000913 | 3,024,914 | 0 | C | A | 25.5% | 216.6 / 11.0 | 99 | L188L (CTC→CTA) | xanQ | xanthine:H(+) symporter XanQ |
| * | NC_000913 | 3,896,780 | 0 | C | A | 25.5% | 196.2 / 12.5 | 102 | R3R (CGG→AGG) | yieH | 6‑phosphogluconate phosphatase |
| * | NC_000913 | 1,502,772 | 0 | G | A | 25.3% | 136.2 / 18.0 | 91 | A106T (GCG→ACG) | ydcL | DUF3313 domain‑containing lipoprotein YdcL |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.0% | 57.9 / 16.2 | 36 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 696741 | 43 (0.520) | 9 (0.150) | 8/434 | 4.1 | 16.3% | intergenic (‑1/+15) | metU/glnW | tRNA‑Met/tRNA‑Gln |
| ? | NC_000913 | 697135 = | 61 (1.010) | intergenic (‑2/+378) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | = 1287084 | 61 (0.740) | 11 (0.140) | 11/550 | 4.2 | 18.4% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | NC_000913 | 1287557 = | 41 (0.530) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 4606166 | 74 (0.900) | 8 (0.140) | 7/412 | 4.3 | 13.8% | intergenic (‑1/+34) | leuV/leuP | tRNA‑Leu/tRNA‑Leu |
| ? | NC_000913 | 4606403 = | 48 (0.830) | intergenic (‑2/+266) | leuQ/rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase | |||||
| * | ? | NC_000913 | = 781322 | 57 (0.690) | 6 (0.080) | 6/512 | 5.6 | 10.0% | intergenic (+100/‑47) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 781811 = | 59 (0.820) | intergenic (+159/‑274) | lysQ/nadA | tRNA‑Lys/quinolinate synthase | |||||
| * | ? | NC_000913 | = 4295870 | 70 (0.850) | 4 (0.060) | 4/512 | 6.5 | 6.7% | intergenic (+76/+566) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| ? | NC_000913 | 4296434 = | 51 (0.710) | intergenic (+640/+2) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
| * | ? | NC_000913 | = 1227665 | 109 (1.320) | 5 (0.060) | 5/568 | 6.5 | 5.0% | intergenic (‑193/‑16) | pliG/ycgL | inhibitor of g‑type lysozyme/PF05166 family protein YcgL |
| ? | NC_000913 | 1228049 = | 86 (1.080) | intergenic (+42/‑30) | ycgL/ycgM | PF05166 family protein YcgL/putative isomerase/hydrolase | |||||
| * | ? | NC_000913 | = 781688 | 62 (0.750) | 3 (0.040) | 3/482 | 6.8 | 5.1% | intergenic (+36/‑397) | lysQ/nadA | tRNA‑Lys/quinolinate synthase |
| ? | NC_000913 | 781845 = | 62 (0.920) | intergenic (+193/‑240) | lysQ/nadA | tRNA‑Lys/quinolinate synthase | |||||
| * | ? | NC_000913 | = 3468779 | 90 (1.090) | 4 (0.050) | 4/556 | 6.9 | 4.8% | coding (1075/2694 nt) | chiA | endochitinase |
| ? | NC_000913 | 3469104 = | 74 (0.950) | coding (750/2694 nt) | chiA | endochitinase | |||||
| * | ? | NC_000913 | = 1286906 | 55 (0.670) | 5 (0.070) | 4/550 | 6.9 | 9.8% | coding (198/276 nt) | ychS | putative uncharacterized protein YchS |
| ? | NC_000913 | 1287557 = | 41 (0.530) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 3764827 | NA (NA) | 4 (0.050) | 4/566 | 7.0 | 80.7% | coding (2645/4134 nt) | rhsA | rhs element protein RhsA |
| ? | NC_000913 | 3765008 = | 1 (0.010) | coding (2826/4134 nt) | rhsA | rhs element protein RhsA | |||||