Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	1,744,735	(ATT)2→1	coding (1279‑1281/1374 nt)	mdtK →	multidrug efflux pump MdtK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1744733 =	1 (0.010)	50 (0.540)	36/588	1.1	99.0%	coding (1277/1374 nt)	mdtK	multidrug efflux pump MdtK
	?	NC_000913	= 1744729	0 (0.000)					coding (1273/1374 nt)	mdtK	multidrug efflux pump MdtK

ACCCTGACGGCCATTTTCACGGTTTCACTGCGGGAGCAAATCGCCCTGTTGTACAACGACAATCCCGAGGTTGTAACGCTGGCTGCGCATTTGATGTTGCTGGCGGCGGTATATCAGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTCAGGTGAAATT  >  NC_000913/1744435‑1745018                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                              aCCCTGACGGCCATTTTCACGGTTTCACTGCGGGAGCAAATCGCCCTGTTGTACAACGACAATCCCGAGGTTGTAACGCTGGTTGCGCATTTGATGTTGCTGGCGGCGGTATATCAGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTNACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTttatt                                                                                                                                                                                                                                                                                              >  2:560084/1‑300 (MQ=255)             gccattttcacggtttcactgcgggagcaaatcgccctgttgtacaacgacaatccctaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccagttgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACg                                                                                                                                                                                                                                                                                  >  2:562774‑M1/287‑300 (MQ=255)                         gtttcactgcgggagcaaatcgccctgttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCAtt                                                                                                                                                                                                                                                                      <  1:399661‑M1/26‑1 (MQ=255)                               ctgcgggagcaaatcgccctgttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTatgatg                                                                                                                                                                                                                                                                >  1:185423‑M1/269‑300 (MQ=255)                                        caaatcgccctgttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGt                                                                                                                                                                                                                                                       >  1:755608‑M1/260‑300 (MQ=255)                                             gagacagttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatnttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttntggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCg                                                                                                                                                                                                                                                  >  2:686527‑M1/255‑300 (MQ=255)                                                 ctgttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagntacgcgttccattttctatattacctntacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCAATTATGATGATGTTGCGTATGCGGTTc                                                                                                                                                                                                                                              <  2:499755‑M1/50‑1 (MQ=255)                                                 ctgttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatantctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTc                                                                                                                                                                                                                                              <  1:514410‑M1/50‑1 (MQ=255)                                                   gttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatncgcgttccattttctatattacctttgcggcttactgggtgctgggcttgccaagcggctanattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTAGTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCt                                                                                                                                                                                                                                            <  2:602022‑M1/52‑1 (MQ=255)                                                   gttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaagtgattggcagtgggattttgcgtggttataaagatacgtgttccattttctatattacctttacggcttactgggtactgggcttgccacgcggctatattctggcactgaccgatctggtcgttgaacctatgaggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATCATGATGATGTTGCGTCTGTGGTTCCt                                                                                                                                                                                                                                            <  2:109096‑M1/52‑1 (MQ=255)                                                    ttgtacaacgacaatcccgaggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGcgtatgcgctgtctc                                                                                                                                                                                                                                           <  1:702468‑M1/53‑8 (MQ=255)                                                                  tcccgaggttgtaacgctggctgcgcatttgattttgctggcggcggtatatcanatttcttactcaatccaggtgattggccgtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTc                                                                                                                                                                                                                             >  2:542678‑M1/234‑300 (MQ=255)                                                                        ggttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcggatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCcat                                                                                                                                                                                                                       <  2:357716‑M1/73‑1 (MQ=255)                                                                          ttgtaacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGccatcc                                                                                                                                                                                                                     <  2:148445‑M1/75‑2 (MQ=255)                                                                              aacgctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCt                                                                                                                                                                                                                 <  2:276955‑M1/79‑1 (MQ=255)                                                                                  ctggctgcgcatttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCaa                                                                                                                                                                                                             >  2:53350‑M1/218‑300 (MQ=255)                                                                                             tttgatgttgctggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg                                                                                                                                                                                                  >  1:115016‑M1/207‑300 (MQ=255)                                                                                                        tggcggcggtatatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGAc                                                                                                                                                                                       >  2:420610‑M1/196‑300 (MQ=255)                                                                                                                   tatcagatttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAAcc                                                                                                                                                                            >  1:121946‑M1/185‑300 (MQ=255)                                                                                                                          tttctgactcaatccaggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACgg                                                                                                                                                                     <  1:727793‑M1/123‑1 (MQ=255)                                                                                                                                          ggtgattggcagtgggattttgcgtggttatnaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcnttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACAAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTAtttt                                                                                                                                                     <  2:512076‑M1/139‑1 (MQ=255)                                                                                                                                          ggtgattggcagtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTAtttt                                                                                                                                                     <  2:317646‑M1/139‑1 (MQ=255)                                                                                                                                                     gtgggattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTCATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTg                                                                                                                                          <  2:159856‑M1/150‑1 (MQ=255)                                                                                                                                                         gattttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGc                                                                                                                                      >  1:571177‑M1/147‑300 (MQ=255)                                                                                                                                                         gattttgcgtgggtataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGc                                                                                                                                      >  2:304816‑M1/147‑300 (MQ=255)                                                                                                                                                             ttgcgtggttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcacggaacgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTg                                                                                                                                  >  2:147725‑M1/143‑300 (MQ=255)                                                                                                                                                                    gttataaagatacgtgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTAAAGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGACAAt                                                                                                                           <  2:231991‑M1/165‑1 (MQ=255)                                                                                                                                                                    gttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGNTGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCAAGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAAt                                                                                                                           <  2:177698‑M1/165‑1 (MQ=255)                                                                                                                                                                    gttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGNTGCTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATCCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAgcgttgcgtcgat                                                                                                                           <  2:179139‑M1/165‑6 (MQ=255)                                                                                                                                                                    gttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAAt                                                                                                                           <  1:162514‑M1/165‑1 (MQ=255)                                                                                                                                                                    gttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCAGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCAAGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAAt                                                                                                                           <  1:234841‑M1/165‑1 (MQ=255)                                                                                                                                                                    gttataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtagttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCAGCTAATAAAGACAAGGCGCAACCTTCAAGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAAt                                                                                                                           <  2:237902‑M1/165‑1 (MQ=255)                                                                                                                                                                      tataaagatacgcgttccattttctatattacctttacggcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATcc                                                                                                                         >  1:478107‑M1/134‑300 (MQ=255)                                                                                                                                                                                          gctctagattactttgacggcttgatgggtgctgggctggccaagcggctatatgctgacactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAt                                                                                                     >  1:210146‑M1/114‑300 (MQ=255)                                                                                                                                                                                                             gcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACagag                                                                                  <  1:713916‑M1/206‑1 (MQ=255)                                                                                                                                                                                                             gcttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCAGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACagag                                                                                  <  1:713963‑M1/206‑1 (MQ=255)                                                                                                                                                                                                              cttactgggtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGt                                                                                 >  1:320744‑M1/94‑300 (MQ=255)                                                                                                                                                                                                                      gtgctgggcttgccaagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTAAACAGAGTTTGCCGAc                                                                         <  2:114261‑M1/215‑1 (MQ=255)                                                                                                                                                                                                                                   caagcggctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTAt                                                            >  1:486318‑M1/73‑300 (MQ=255)                                                                                                                                                                                                                                         gctatattctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTCATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAATTTGCCGAATGGCATCTGTTATCTCAAc                                                      <  2:126212‑M1/234‑1 (MQ=255)                                                                                                                                                                                                                                               ttctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCNTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTNCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCATAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGtat                                                <  2:598277‑M1/240‑1 (MQ=255)                                                                                                                                                                                                                                               ttctggcactgaccgatctggtcgttgaacctatggggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGtat                                                <  1:109013‑M1/240‑1 (MQ=255)                                                                                                                                                                                                                                                                            cctctggggccagcaggcttctggataggctTTATTGGCCTGAAGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAATGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAAACTTCACGGGTTGCGCCTGCATNTTTACGCAGGCTGGAGCGTTGCGCCAATCCAGTCTTCGTACGGCTGTAGTTTCAGAGCGTTACACAGAGTTTGCAGACTGGTATCTGTTATCTCAACGTGTATCTCCACTGTAACTTCCCCTTTCCCATtga                   <  2:169433‑M1/269‑1 (MQ=255)                                                                                                                                                                                                                                                                                   tgccagcaggcttctggataggctGTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGNCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTTGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTc            >  2:185804‑M1/25‑300 (MQ=255)                                                                                                                                                                                                                                                                                   ggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGaaggc            >  1:258674‑M1/25‑298 (MQ=255)                                                                                                                                                                                                                                                                                   ggccagcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTc            <  1:681733‑M1/276‑1 (MQ=255)                                                                                                                                                                                                                                                                                        gcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTCAGGTg       <  1:344597‑M1/281‑1 (MQ=255)                                                                                                                                                                                                                                                                                        gcaggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTATGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCCACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTCAGGTg       <  1:686873‑M1/281‑1 (MQ=255)                                                                                                                                                                                                                                                                                           ggcttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGTGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCCACGAGCATCCAGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGCGCGTTACACAGAGTTTGCCGACTGGCATCCGTTATCTCAACGTGTATATCCCAGGTAACTTCCCCTTTCAACttgatgaagtaggatgaaa    <  2:221411‑M1/284‑10 (MQ=255)                                                                                                                                                                                                                                                                                             cttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTCAGGTGAAAtt  <  1:183092‑M1/286‑1 (MQ=255)                                                                                                                                                                                                                                                                                             cttctggataggctTTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTAAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTCAGGTGAAAtt  <  2:195394‑M1/286‑1 (MQ=255)                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                              ACCCTGACGGCCATTTTCACGGTTTCACTGCGGGAGCAAATCGCCCTGTTGTACAACGACAATCCCGAGGTTGTAACGCTGGCTGCGCATTTGATGTTGCTGGCGGCGGTATATCAGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTCAACGTGTATATCCCCGGTAACTTCCCCTTTCACATTGATGAAGTCAGGTGAAATT  >  NC_000913/1744435‑1745018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.