mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,767,445 | 0 | C | A | 45.2% | 110.3 / 35.1 | 93 | intergenic (+90/‑265) | rnlB/yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| * | NC_000913 | 2,477,265 | 0 | A | C | 37.5% | 85.1 / 13.2 | 56 | L122* (TTA→TGA) | dsdC | DNA‑binding transcriptional dual regulator DsdC |
| * | NC_000913 | 2,767,449 | 0 | C | A | 34.7% | 158.7 / 20.7 | 98 | intergenic (+94/‑261) | rnlB/yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| * | NC_000913 | 3,911,533 | 0 | C | A | 34.3% | 240.7 / 25.1 | 143 | intergenic (‑8/+306) | pstS/glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| * | NC_000913 | 2,185,849 | 0 | G | T | 34.0% | 140.8 / 12.3 | 94 | intergenic (‑53/‑68) | rcnR/rcnA | DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
| * | NC_000913 | 4,136,467 | 0 | A | C | 32.3% | 107.5 / 19.2 | 66 | E120D (GAA→GAC) | yijE | cystine exporter |
| * | NC_000913 | 4,296,191 | 0 | A | C | 30.8% | 43.7 / 24.0 | 39 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,767,444 | 0 | C | A | 30.1% | 152.5 / 11.6 | 93 | intergenic (+89/‑266) | rnlB/yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| * | NC_000913 | 58,065 | 0 | C | A | 29.4% | 161.4 / 13.4 | 85 | P234P (CCC→CCA) | djlA | co‑chaperone protein DjlA |
| * | NC_000913 | 1,334,966 | 0 | A | C | 28.2% | 166.2 / 16.5 | 110 | intergenic (+137/‑182) | cysB/ymiA | DNA‑binding transcriptional dual regulator CysB/uncharacterized protein YmiA |
| * | NC_000913 | 3,269,935 | 0 | A | C | 28.1% | 140.7 / 11.3 | 97 | intergenic (+333/+281) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| * | NC_000913 | 2,427,716 | 0 | C | A | 27.3% | 183.4 / 10.8 | 99 | E26* (GAG→TAG) | argT | lysine/arginine/ornithine ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,903,015 | 0 | C | A | 27.0% | 122.4 / 39.7 | 74 | G229G (GGG→GGT) | bglB | 6‑phospho‑beta‑glucosidase B |
| * | NC_000913 | 3,181,214 | 0 | C | A | 25.8% | 235.9 / 11.6 | 128 | S265Y (TCC→TAC) | ygiC | putative acid‑‑amine ligase YgiC |
| * | NC_000913 | 4,360,965 | 0 | C | A | 25.3% | 321.4 / 15.6 | 154 | E324* (GAG→TAG) | cadC | DNA‑binding transcriptional activator CadC |
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.2% | 97.5 / 24.3 | 56 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,296,190 | 0 | A | G | 23.1% | 59.6 / 14.1 | 39 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,841,663 | 0 | G | A | 22.7% | 177.9 / 21.6 | 88 | A26V (GCG→GTG) | nepI | purine ribonucleoside exporter |
| * | NC_000913 | 3,226,224 | 0 | G | T | 21.3% | 357.6 / 11.0 | 164 | intergenic (+53/‑10) | ebgC/ygjI | DUF386 domain‑containing evolved beta‑D‑galactosidase subunit beta/putative transporter YgjI |
| * | NC_000913 | 3,471,195 | 0 | A | G | 20.5% | 258.7 / 63.5 | 112 | R45R (CGT→CGC) | tufA | translation elongation factor Tu 1 |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 104 (1.220) | 6 (0.070) | 6/580 | 5.6 | 5.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 93 (1.130) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3708453 | 10 (0.120) | 4 (0.050) +T |
4/596 | 6.5 | 17.1% | intergenic (‑748/+163) | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| ? | NC_000913 | 3708623 = | 29 (0.340) | noncoding (70/77 nt) | proK | tRNA‑Pro | |||||
| * | ? | NC_000913 | = 1376615 | 34 (0.400) | 3 (0.040) | 3/572 | 6.8 | 7.4% | coding (582/789 nt) | ycjR | 3‑dehydro‑D‑guloside 4‑epimerase |
| ? | NC_000913 | 1376985 = | 43 (0.530) | coding (154/1056 nt) | ycjS | D‑glucoside 3‑dehydrogenase | |||||
| * | ? | NC_000913 | = 3989393 | 103 (1.210) | 4 (0.050) | 3/578 | 6.9 | 3.7% | coding (436/741 nt) | hemD | uroporphyrinogen‑III synthase |
| ? | NC_000913 | 3989878 = | 106 (1.290) | coding (889/942 nt) | hemC | hydroxymethylbilane synthase | |||||