mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 218 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,285 | 0 | T | C | 70.4% | 35.4 / 16.6 | 27 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,769 | 0 | T | A | 70.0% | 5.0 / 13.3 | 20 | P39P (CCA→CCT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 4,208,132 | 0 | G | A | 65.8% | 16.7 / 34.8 | 38 | intergenic (‑600/‑15) | purH/rrsE | bifunctional AICAR transformylase/IMP cyclohydrolase/16S ribosomal RNA |
| * | NC_000913 | 1,634,724 | 0 | G | A | 65.4% | 3.5 / 18.8 | 26 | F54F (TTC→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,778 | 0 | T | G | 65.0% | 2.5 / 13.2 | 20 | T36T (ACA→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,799 | 0 | A | G | 62.5% | ‑4.3 / 12.5 | 16 | D29D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,699 | 0 | A | C | 59.4% | ‑5.0 / 34.9 | 32 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,271 | 0 | G | A | 59.3% | 12.2 / 28.1 | 27 | H108H (CAC→CAT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,708 | 0 | A | G | 57.8% | 27.7 / 78.9 | 65 | T220T (ACA→ACG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,702 | 0 | A | C | 56.9% | 25.7 / 81.1 | 65 | A218A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,636,503 | 0 | T | C | 55.9% | 1.5 / 42.1 | 34 | intergenic (‑136/‑253) | nohA/ynfO | putative prophage DNA‑packaging protein NohA/DUF3950 domain‑containing protein YnfO |
| * | NC_000913 | 1,429,714 | 0 | A | C | 55.2% | 28.1 / 84.5 | 67 | A222A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,636,484 | 0 | C | T | 54.5% | ‑6.1 / 44.5 | 33 | intergenic (‑117/‑272) | nohA/ynfO | putative prophage DNA‑packaging protein NohA/DUF3950 domain‑containing protein YnfO |
| * | NC_000913 | 2,483,254 | 0 | G | A | 54.5% | 0.1 / 10.3 | 11 | S29L (TCA→TTA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 581,042 | 0 | T | G | 54.0% | ‑2.2 / 47.5 | 37 | L70R (CTG→CGG) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 1,429,692 | 0 | T | A | 53.8% | 9.6 / 104.8 | 65 | L215Q (CTA→CAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,569 | 0 | A | T | 53.8% | 1.5 / 36.8 | 26 | F106Y (TTT→TAT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,571 | 0 | C | T | 53.8% | ‑0.2 / 29.1 | 26 | E105E (GAG→GAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,578 | 0 | T | C | 53.8% | 3.2 / 32.1 | 26 | E103G (GAA→GGA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,676 | 0 | A | G | 53.8% | 2.3 / 44.8 | 40 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |