| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,699 | IS1 (+) +9 bp | coding (286‑294/312 nt) | ymdA → | uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 290634 = | NA (NA) | 18 (1.160) | 14/308 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1105699 = | 0 (0.000) | coding (286/312 nt) | ymdA | uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 12 (0.770) | 8/308 | 0.4 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1105707 | 0 (0.000) | coding (294/312 nt) | ymdA | uncharacterized protein YmdA | |||||
TGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTCATTAATGGGAGGCGGCGGCGTCGATGGGGCCATTCATCG > NC_000913/1105524‑1105938 | cgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcccctggcaaggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCaa > 1:54271‑M2/176‑250 (MQ=255) atcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTtaan < 1:218411‑M2/72‑2 (MQ=255) cgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGaaca > 1:98736‑M2/151‑188 (MQ=255) cccGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGTAAAACCTCCTCCAGCAAAGCGTTAATGAGCGAAAATGTCAAAACCGCGCAAATAGCCTCAGTATAAGTGCAGTATCTTGATAAACAGAACAAGCTGGCTGTAATGggcgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggg < 1:267875‑M2/251‑105 (MQ=255) gTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGGCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTGGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgagttagtgtattatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtccagctactgacggggtgn > 1:104086‑M2/1‑144 (MQ=255) tgaatctgngnnngnncctggcacggctgggacggaagtcgctgtcgttctcaaaatcggnggagcagcatgacaangtnatcgngcantatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGCACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAAtgn > 2:246522‑M2/132‑194 (MQ=255) tgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaagcggtggagcagcatgacaaaggcatcgtgcattatctgaacataaaacactatcaataagttggaggcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGc < 1:246522‑M2/64‑1 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTAtt > 1:181040‑M2/116‑251 (MQ=255) gTTCTNNTCNNNGCNNAACCTACTCCAGCAAAGCGTTAANGAGCGGCAATGTCAGAA‑CGCGCAAATAGCNTNANTAACNNTGCNGTATCTTGATNAACAGAAAAAGCTGGCTGTAATggg > 2:266772/1‑118 (MQ=255) ggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAGGTTTCTGAACAACGCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGTAGGCGTTATGAAAACGCGTATTCATGTTGTGCAgg < 1:112181‑M2/149‑1 (MQ=255) gtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGc < 1:57002‑M2/64‑1 (MQ=255) gctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaaacctatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTAcc > 1:166948‑M2/92‑251 (MQ=255) aCTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgggttctggtgctatcagctgtccctccggttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctn > 1:70007‑M2/1‑98 (MQ=255) aCTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGAGAAACAGAAAAAGCGGGCTGTAATGggtgatgctgccaacttactgatttagtgtattatggtgttttttatgtgctccagtggcttctgtttctatcagctgtccc > 1:329970‑M2/1‑98 (MQ=255) tcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactagcaataagttggaggcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTAAGCAGAATAAAGCTATTTAACCAGAAAGCGTGCTCTACTCTGAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCAtgttg < 1:327179‑M2/143‑1 (MQ=255) tCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 1:186095‑M2/1‑96 (MQ=255) tAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgat > 1:26786‑M2/1‑83 (MQ=255) ntggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGAtgtg > 1:103809‑M2/73‑250 (MQ=255) acaaagtcatcgggcattctctgaacataaaacactctcaataaggtggattcattaccGCTGTAATGAACATCGAATCTAACTCAGTTTCTGACCCACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCctg > 1:298307‑M2/60‑142 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTNTACNNNNNAg > 2:219285‑M2/49‑144 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATtan < 1:219285‑M2/159‑2 (MQ=255) ntcAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccg < 1:212213‑M2/179‑132 (MQ=255) gTGCAGTATCTTGATAAACCGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgt < 1:105505‑M2/127‑89 (MQ=255) tGCAGTATCGTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctggttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgn > 1:211357‑M2/1‑38 (MQ=255) gCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttcctgatttagtgtctgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaccggcaaacgcactg < 1:263279‑M2/165‑129 (MQ=255) cAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcacaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttatcaacccggtacgcacc < 1:272828‑M2/251‑216 (MQ=255) aTCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatgg < 1:149637‑M2/69‑38 (MQ=255) gttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACGCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGGGTATTCATGTTGTGCa < 1:124540‑M2/147‑1 (MQ=255) gagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGTAGGCGTTATGAAAACGCGTATTCATGTTGTTCAGGGTTATATTACCAAACTGGCCGTTGAtg < 1:294862‑M2/176‑1 (MQ=255) gagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTCATTAATGGGAGGCGGCGGCGTCGATGGGGCCATTCATcg > 1:4066‑M2/12‑251 (MQ=255) gtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACAATTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGt > 1:139170‑M2/10‑160 (MQ=255) | TGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTCATTAATGGGAGGCGGCGGCGTCGATGGGGCCATTCATCG > NC_000913/1105524‑1105938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |