mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 69 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 578,574 | 0 | A | C | 68.0% | 27.9 / 10.6 | 27 | intergenic (+6/+26) | rzpD/borD | putative prophage endopeptidase RzpD/prophage lipoprotein BorD |
| * | NC_000913 | 578,571 | 0 | C | T | 63.0% | 17.3 / 18.3 | 27 | intergenic (+3/+29) | rzpD/borD | putative prophage endopeptidase RzpD/prophage lipoprotein BorD |
| * | NC_000913 | 581,443 | 0 | C | T | 61.1% | 0.8 / 13.9 | 18 | intergenic (+64/‑91) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| * | NC_000913 | 1,429,160 | 0 | C | G | 61.1% | 12.2 / 17.4 | 19 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,099 | 0 | A | . | 60.0% | 3.1 / 19.0 | 15 | intergenic (‑206/+85) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,502 | 0 | A | G | 57.1% | 0.9 / 11.1 | 14 | N31N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,111 | 0 | A | C | 56.2% | 1.8 / 12.7 | 16 | T21T (ACA→ACC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,676 | 0 | A | G | 56.2% | ‑4.9 / 12.0 | 16 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,228 | 0 | T | C | 55.6% | 3.2 / 15.0 | 18 | V60V (GTT→GTC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,457 | 0 | A | G | 53.3% | 0.3 / 13.8 | 15 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,236 | 0 | T | A | 52.9% | 1.7 / 10.5 | 18 | L63* (TTG→TAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,354 | 0 | A | G | 52.9% | 0.1 / 12.9 | 18 | A102A (GCA→GCG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,360 | 0 | C | T | 52.9% | ‑4.6 / 16.1 | 17 | R104R (CGC→CGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,126 | 0 | A | C | 52.6% | ‑4.9 / 18.8 | 19 | A26A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,128 | 0 | A | G | 52.6% | ‑1.1 / 18.0 | 19 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,171 | 0 | A | G | 52.6% | 2.3 / 18.0 | 19 | E41E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,246 | 0 | A | T | 52.6% | ‑5.8 / 19.2 | 20 | G66G (GGA→GGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,345 | 0 | T | G | 52.6% | ‑4.3 / 14.7 | 19 | R99R (CGT→CGG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,207 | 0 | T | G | 52.4% | 10.8 / 14.7 | 21 | V53V (GTT→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,658 | 0 | A | G | 52.2% | ‑0.0 / 23.6 | 24 | V76V (GTT→GTC) | tfaQ | putative tail fiber assembly protein TfaQ |