Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913579,0990A.60.0% 3.1 / 19.0 15intergenic (‑206/+85)borD/ybcVprophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV
Reads supporting (aligned to +/- strand):  ref base A (4/2);  new base . (5/4);  total (9/6)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTATTGCTGAAATGTGATTTCTCTTGAT  >  NC_000913/578861‑579349
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                          
ngCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGTCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAA‑CGATGCACACAgg                                                                                                                                                                                                                                               >  1:56923/2‑251 (MQ=255)
  ccAGCGCAGTAGCGAGTAGCATTTTTTTAATGGGGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGTCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAA‑GATGCACACAGGGt                                                                                                                                                                                                                                             >  1:180388/1‑251 (MQ=255)
          gTAGCGAGTAGCATTTTTTTCATGGTGTTATTCACGATGCCTTTTGAAGTTCGTAGAATCGTATGTGCAGAAAATTAAACAAACACTAAACAATGAGTAGAACTTTCATTTTGTTAACATTTCTTAATGTTTGTCAGGTGCGAAGAATCATCATTGTCTTCCCGGCTTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGCGGGTCCGGGAATAAT‑AAAAACGATGCACACAGGATTTAGcgcg                                                                                                                                                                                                                                     >  1:141319/1‑251 (MQ=255)
                                                          gTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGTCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGCCGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAA‑CGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGCCAACGCCCCGGTGCTGACACGGAAGAAAc                                                                                                                                                                                     >  1:117177/1‑251 (MQ=255)
                                                                          gtgtAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTAGTAATGTATGTCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAA‑CGATGCACACAGGGTTTAGCTCGTATACGTATTGCGTTATGCCAACGTCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTa                                                                                                                                                                     <  1:92831/251‑1 (MQ=255)
                                                                                                          gTTGAAATTTCATATTGTTAATATTTATTAATGTATGTCAGGTGCGATGAATCGTCATTGTATTCACGGCTTAACTCTGTCAAAAGCCCTGACGGGGAACTTCTCTGAGGGAGTGTACGGGAATAATTAAAA‑CGATGAACACAGGGTTTAGCGCGTACACGTATTGCATTATGCCAACGCCCCGGTGCTGACAAGGAAGAAACCAGACGTTATGATTTAGCGTGGAAAGCTTTGTGTAGTGTTCTg                                                                                                                                          >  1:144196/1‑246 (MQ=255)
                                                                                                             gAAATTTCATATTGTTAATATTTATTAATGTATGTCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAA‑CGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGCCAACGCCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGctct                                                                                                                                  >  1:182263/1‑251 (MQ=255)
                                                                                                                                                                 cATTGTATTCCCGGATTAACTATGTCCACAGCCCTGATGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAA‑CGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGCCAACGCCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATAGCTTTTATGTTcat                                                                               <  1:47655/250‑3 (MQ=38)
                                                                                                                                                                     gTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAA‑CGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGc                                                                                                                                                                                                                  <  1:79931/115‑1 (MQ=255)
                                                                                                                                                                                   aCTATGTCCACAGCCCTGACTGGGAACTTCTCTGCGGGAGTTTCCTGGAATAATTAAAA‑CGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGCCAACGCCCCGGTTCTGACACGGAAGAATGCGGGCGTTATGATTTAGCGGGGAAAGAGTTGTGTAGTGGTCTGAGTGCTCTCAGTAAATAGTAATGCATTAGCAAAGGTGTAGTAATATCTTTTATGTTCATGGATATTTGTAACCCATCg                                                            <  1:108563/251‑1 (MQ=255)
                                                                                                                                                                                                        gggAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCa                                         >  1:75678/1‑250 (MQ=255)
                                                                                                                                                                                                           aaCTTCTCTGCGGGAGTGTCCGGGAATAATTAAAA‑CGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGCCAACGCCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCATGGATATTTGTAACCCATCGGAAAACTCCTGCTTTAGCAAGAtt                                    >  1:6872/1‑251 (MQ=255)
                                                                                                                                                                                                                  ctGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTAGATGTATTGTTTTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGCAAGATTTGTGTAGTGTTCTGACTGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCt                              >  1:29137/1‑251 (MQ=255)
                                                                                                                                                                                                                    gCGGGAGTGTCCGGGAATAATTAAAAACGATGCCCACAGGTTTTAGCGCGTCCATGTATTGTATTATGCCAACTCCCCGGTGCTAACGCGGAAGAAACCGGACGTTAt                                                                                                                                                                           <  1:10261/108‑1 (MQ=255)
                                                                                                                                                                                                                            gtCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGGTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGGAATATCGTTTATGTTCGTGGATATTTGTAATCCATCGGAGAACTCCTGCTTTAGCAAGATTTTCCCTGTATTGCTg                     <  1:202473/250‑1 (MQ=255)
                                                                                                                                                                                                                                              aCGATGCACACAGGGTTTAACGCGTACACGTATTGCATTATGCCAACGCCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTCTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCATGGATATTTGTAACCCATCGGAAAACTCCTGCTTTAGCAAGATTATCCCTGTATTGCTGAAATGTGATTTCTCTTGAt  <  1:3095/251‑1 (MQ=25)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                          
GGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTATTGCTGAAATGTGATTTCTCTTGAT  >  NC_000913/578861‑579349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑