| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,429,171 | 0 | A | G | 52.6% | 2.3 / 18.0 | 19 | E41E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| Reads supporting (aligned to +/- strand): ref base A (3/6); new base G (8/2); total (11/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.98e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGT‑ACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAG > NC_000913/1428935‑1429414 | gCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACCGTGTTATGACAGCCCGCCGGACCCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTACAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGc > 1:197290/1‑251 (MQ=255) cACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGACGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTTAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTa > 1:119838/1‑250 (MQ=255) aTCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACATCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGTTGAATATGGCAGTAAAAATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAAACCAGCTGAAAGCAAAACGTAACAGCACCACTGTGGTGGTGAACACCCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTGACAGCATGGACGTTg < 1:212929/251‑1 (MQ=255) gCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGT‑ACGGTCAGTACAgtgtcatcctgcagg > 1:85562/1‑237 (MQ=255) ccggaaccggtgggCTTTTTTGTGGGGTGAATATGGCAGGAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACTGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGc < 1:148227/171‑1 (MQ=255) gnaaccggtgggCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCCCGGTGGTGGGGAACACGGGGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGatgtgg > 1:170339/10‑185 (MQ=255) tgGGGCGAATATGGCAGTAAAGATTTCAGGAGTACTGAAAGACGGCACAGGAAAAACGGTACAGAACTGCACCATTCAGATGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGGGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGT‑ACGGTCAGTACAGTGTCATACTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGAtt > 1:65686/1‑251 (MQ=255) ggTGANNATNNNAGNNAAGATTTCAGGTGTACTGAAAGANGGCACAGGAAAACCGGTACAGAACTGCACNANCNAGCTNNAAGNAAAACGTAACNGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGCTGAAGNCNGGCGTTACAGCATGGACGTTGAGT‑ACGGTCANTACAGCGTTATTCTGTTGGTGGAANGATTNncgncnnnnnnnnnn > 2:159747/1‑213 (MQ=255) gCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTAc > 1:109053/1‑144 (MQ=255) aggCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGT‑ACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCAACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCATGACgg > 1:15394/2‑251 (MQ=255) gCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGAGGTGAACACGGAGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGT‑ACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCa > 1:193195/1‑243 (MQ=255) aaaaCCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGGAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGt < 1:188498/122‑1 (MQ=255) aaCCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGGGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGT‑ACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATGCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGcc < 1:159747/251‑1 (MQ=255) aGAACTGCACAAACCGGCGGAAAGCAAAAGGTAGCAGCACCACGGGGGTGGTGAACGCGGTGCCCTCAGAAAATCCGGATGAATCCGTCTGTTACAGCATGGACGTTG‑GTGAGGGTAATTATGGCGTCACTGGGTTTGTGGAAGGATTCCCGCCGTCACATGCCGGGGCTATTGCCGTGTATGAAGATTCTCAGCCCGGGACGCTGAATGATTTTCTCGGTCCCAGGACGGAGGATGATGCCCGTCCGGAg < 1:198554/251‑1 (MQ=255) caATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGT‑ACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTgcgc > 1:169723/1‑251 (MQ=255) gAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGT‑ACGGTCAGTACAGTTTCATCCTGCAGGTGGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCATGACGGAGGATGATGc < 1:178861/222‑1 (MQ=255) cacGTTGGCCTAAGAAAATCCGGATGAAGCCGGGCGTTACAGCAGGGAGGTGGAGT‑ACGGTCAGTACAGCGTTATTCTGTGGGTGGAAGGCTTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACGGATGGTGGAAGAGGTGGTGCGTAACGCGTCCGCgg < 1:172378/251‑1 (MQ=255) gcTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGT‑ACGGTCAGTAAAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGCTTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCAATGACGGAGGATGATGCCCGGCCGGAGGTGCTGCGTCGTATTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGt > 1:150114/2‑237 (MQ=255) cctaaGAAAATCCGGATGAAGCCGGGCATTCCAGCATGGACGTTGAGT‑ACGGTCGGTACAGCGGTATTCTGTTGGTGGATGGTTTCCCGCCGTCACATGCCGTGACCACTACCGTGTATGAAGAGTCCCAACCCGGTACGCTGAATGATTGTCTCGGTGACATGACGGAGGATGATGCCCGTCCGGAGGCCCTGCGCCGTTTTGAACTGATGGTGGACGAGGTGGGGCTTAACGCGTGCGCGGTGGCACAg < 1:16949/247‑1 (MQ=255) | GCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGT‑ACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAG > NC_000913/1428935‑1429414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |