Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,135,180 IS2 (–) +5 bp coding (1346‑1350/2181 nt) katG → catalase/hydroperoxidase HPI

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4135180 =0 (0.000)12 (1.250) 11/314 0.0 100% coding (1346/2181 nt) katG catalase/hydroperoxidase HPI
?NC_000913 4498181 = NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 = 41351840 (0.000)10 (1.050) 8/314 0.1 100% coding (1350/2181 nt) katG catalase/hydroperoxidase HPI
?NC_000913 = 4499511 NA (NA)noncoding (1331/1331 nt) IS2 repeat region

CGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTC  >  NC_000913/4499302‑4499737
                                                                                                                                                                                                                 |                                                                                                                                                                                                                                  
cGTGAAAACGATAAAGCGTGACTACATCAGTATCCTGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGCTCGAGCATTACAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACt                                                                                                                                                                                           >  1:108899/1‑251 (MQ=255)
                                       cAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGAATTATAACGAATGGTATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCCGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCa                                                                                                                                                          >  1:209887/1‑245 (MQ=255)
                                                   gTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTCTCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATAc                                                                                                                                                                                                                >  1:153779/1‑179 (MQ=255)
                                                                                      aGNATTNTNNCNNATGNCAGCCGCATAGTGCGCTGGGTNNTCGCTCGCCNCGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTNGAAATATAGNNGCNAATCCNCNNNGNNNTGNTATGAATACGGATATTTTANACNNAATACTNTTCAGTACAAGCGACTGTATTACAGt                                                                                                                                                                <  2:50631/192‑1 (MQ=18)
                                                                                                           cGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATg                                                                                                                                                    >  1:193156/1‑183 (MQ=255)
                                                                                                                                     ccACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGACGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATc                                                      >  1:164238/1‑251 (MQ=255)
                                                                                                                                                                                         ntCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATCTGAATACGGATATTTTATACCGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTc  >  1:44270/2‑251 (MQ=255)
                                                                                                                                                                                                  tataGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATTCTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTg                                   <  1:6360/209‑1 (MQ=255)
                                                                                                                                                                                                  tataGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCNNTATATGNnt                                                                                                                                                 >  2:6360/1‑99 (MQ=255)
                                                                                                                                                                                                                 |                                                                                                                                                                                                                                  
CGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTC  >  NC_000913/4499302‑4499737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.