| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,135,180 | IS2 (–) +5 bp | coding (1346‑1350/2181 nt) | katG → | catalase/hydroperoxidase HPI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4135180 = | 0 (0.000) | 12 (1.250) | 11/314 | 0.0 | 100% | coding (1346/2181 nt) | katG | catalase/hydroperoxidase HPI |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4135184 | 0 (0.000) | 10 (1.050) | 8/314 | 0.1 | 100% | coding (1350/2181 nt) | katG | catalase/hydroperoxidase HPI |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACTAACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4135371‑4135180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTT > NC_000913/4498181‑4498408 GAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGCCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACTAACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCACCCTGAATCTCC > 1:117565/1‑214 AGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTCGAAGCAGATGCCCAGGCCACCGATACCAGCTCACTCACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTT > 1:177088/1‑251 GGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACTAACAGACAGACCAGAATCCGCAATCGCGTATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG > 1:219022/1‑251 GCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCCCCGATACCAGCTCACTAACAGACAGACCAGAATCCGCACTCGCGAATTTCCGATCGATACTGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGT > 1:34142/1‑213 CGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACTAACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATG < 1:119851/219‑1 AGATGCCCAGGCCACCGATACCAGCTCACTAACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACATAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAAC > 1:160911/1‑250 GCCCAGGCCACCGATACCAGCTCACTATCAGCCAGACCAGAATCCGCAATCGCGACTTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCCCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGACTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTCCCACACAGGAAAAGAT > 1:182054/1‑220 GCCCAGGCCACCGATACCAGCTCACTAACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACATGAAAAGATCGCAATGGTTCAGCAGAG < 1:172498/238‑1 ACTAACAGACAGACGAGAATGCGAAATCACGAATTTTAGATCGATAATGTTAGACTGGCCACCTGACTCTCCAGACAACCAATATCACTTAAATAAGTGCTAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGCGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGT > 1:182681/1‑206 CAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTACATACGTGATAGTCTTAATACTAGTTTTTAGACTAGT > 1:208305/1‑123 cCGAATTTCAGATCGCTCATGTTAGCCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTACATAAGTGATCGTCTTAATACTAGTTTTTCGACTCGTCATTGGCGAACAGATGATTGATGTCTTAGGGCCGGAGAACCGCCGACGGCGTACCACCCAGGACAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTT > 1:166336/2‑250 GTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGCCTTAATACTAGTTTTTAGACTAGTCCTTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAAC > 1:193045/1‑121 GAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACTAACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4135371‑4135180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTT > NC_000913/4498181‑4498408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |