Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,105,376 IS2 (–) +5 bp intergenic (+83/‑34) csgC → / → ymdA curlin chaperone/uncharacterized protein YmdA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)8 (1.080) 4/314 0.3 100% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 1105376 = 0 (0.000)intergenic (+83/‑38) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
* ? NC_000913 = 11053801 (0.140)10 (1.340) 9/316 0.0 90.6% intergenic (+87/‑34) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
?NC_000913 1467910 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region

GAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCG  >  NC_000913/1105135‑1105623
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acgccagagaaataactggctgtctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaatctctgctgaacaattgcgatctgttcctgtgtggtacgccgtctgcggttcgccgtcccgaagtcatcaaccatctggtctccaatttctagtctaaaaacgagtattaagactatcacttagttaagtgatattggttgtctggagattcagggggccagtctaacattatcg                                                                                                                                                                                                                                                  <  1:28891‑M2/9‑8 (MQ=255)
       cccTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTCAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGCCAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccc                                                                                                                                                                                                                                          >  1:80119‑M1/1‑239 (MQ=255)
                                                                ccccGGACGATCGGGTGAATATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatat                                                                                                                                                                                 >  1:70603‑M1/1‑182 (MQ=255)
                                                                                tctgaacaattgtgttcttttcctgtgttgtacgccgtctgcgtttctccggccctaagacatcaatcatcttttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatatttgttgtctggtgattcagggttccagtctaACCCTCAAGGATGACTAATTATTGAGGAAATAGAATAAATGTTCATACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTcc                                                                                                                                                                  <  1:133739‑M2/88‑1 (MQ=255)
                                                                                                              tacgccgtctgcgtttctccggccctaagacatcaattctctgttctccaatgactagtctaaaaaatagtattaagactatcacttatttcagtgatattggttgtctggagattcagggggcccggctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGATTGTTTTTTCCTTTTTTTGCCATTGCTGGGCGCACCGTgcacg                                                                                                                                  >  1:148660‑M2/132‑249 (MQ=255)
                                                                                                                            cacaACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGCGACTGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgccctatatttccagacctcttttattacctaacccattacaagaccgccgccgcaaatattcccgtggcgagcggtaacccaacccacctagcggatgccattcgttataatgcctgaacg                                                                                                                     >  1:162373‑M1/1‑122 (MQ=255)
                                                                                                                                  ggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggtgccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATTTTCATACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTGTTTCCTTTTATTGTCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTAt                                                                                                              <  1:101220‑M2/140‑1 (MQ=255)
                                                                                                                                      gccgccCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgt                                                                                                                                                                                                                       <  1:93866‑M1/143‑32 (MQ=255)
                                                                                                                                       ncgcccTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                            >  1:49195‑M1/2‑111 (MQ=255)
                                                                                                                                        cgccCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaagg                                                                                                         <  1:66622‑M1/251‑142 (MQ=255)
                                                                                                                                               naatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTgg                                                                                                 >  1:103471‑M2/99‑251 (MQ=255)
                                                                                                                                               caatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAAttgtn                                                                                                  <  1:49513‑M2/152‑2 (MQ=255)
                                                                                                                                                  aGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctg                                                                                               <  1:156693‑M1/251‑152 (MQ=255)
                                                                                                                                                                              aGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgat                                                                   <  1:79326‑M1/251‑180 (MQ=255)
                                                                                                                                                                                         ngactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCttt                                                                                                                                                               >  1:49821‑M2/57‑147 (MQ=255)
                                                                                                                                                                                                               gcGACTCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttctcacttaacccattacaagcccgctgccgccgatattcccgtggcgagcgataacacagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcacggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacga                                   >  1:120215‑M1/1‑39 (MQ=255)
                                                                                                                                                                                                                                              ctaaCCATCAAGGATGACTAATCATTGAGGAAATAGATTAAATGTTCAGACCTTTTTTTAAAC‑ATCTTATGCTGGGCAGTATGTTTTTTCCTTTTAGTGCCATTGTTGGAAGCACCGTGCAAGGGGGCGTGATACATTTTTATGGACAAATTGTGGAACCGGGATGTGACGTCAGCACCCAGTCATCACACGTCGAAATGAACTCCCCATATAATGGATCTACTCCGGGAAAAACCTACTCCAGCAAAg    >  1:158655/3‑249 (MQ=255)
                                                                                                                                                                                                                                              ctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCg  >  1:141940‑M2/4‑251 (MQ=255)
                                                                                                                                                                                                                                               caACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagccagctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccatctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctcc         >  1:129247‑M1/1‑7 (MQ=255)
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GAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCG  >  NC_000913/1105135‑1105623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.